BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G28929.1 Length=1107 Score E Sequences producing significant alignments: (Bits) Value Ahg315590 jgi|Araly1|315590|fgenesh1_pm.C_scaffold_2000623 350 2e-95 > Ahg315590 jgi|Araly1|315590|fgenesh1_pm.C_scaffold_2000623 Length=303 Score = 350 bits (189), Expect = 2e-95 Identities = 269/307 (88%), Gaps = 8/307 (3%) Strand=Plus/Minus Query 198 TTATACAACTTGGGTATTACATGGAGAGGATATATGTGTCACAGGGAATGCAAGAGTACC 257 ||||||||||||| || |||| |||||||||||||||||||||| |||||||||||||| Sbjct 303 TTATACAACTTGGATACTACACGGAGAGGATATATGTGTCACAGAAAATGCAAGAGTACC 244 Query 258 TTCTGATATTGATCGAGCTGATTTAGATTCAACTTTGAATCTCTTGGATGAT-CTTTTCA 316 |||| |||||||||||||||||||||| |||||| | ||||||||||||||| ||||| Sbjct 243 TTCTAATATTGATCGAGCTGATTTAGACTCAACTATAAATCTCTTGGATGATATTTTTC- 185 Query 317 CCGATATTAATTCGAATTTGTCTGGTGAACACGTA-CCTGGATCGTGTGATCAACCTGTG 375 | |||| || | | ||| ||| ||||||||||| | |||||||||||||| |||||| || Sbjct 184 CTGATAGTACTGCAAATATGTTTGGTGAACACG-AGCCTGGATCGTGTGAGCAACCTATG 126 Query 376 GACACTGATATACCATCAACTTCAAGTGGAAATTGTGGAAAAGGAGAAGGTTTTGATGAT 435 |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GACACTGATAGACCATCTACTTCAAGTGGAAATTGTGGAAAAGGAGAAGGTTTTGATGAG 66 Query 436 TTGTTTGCTGAATTTATCCAAAAGCTATAT--ATGGGAAGTAATAAGTTCACGAAGTTGT 493 ||||| |||| |||| |||| |||||||| ||| | ||| ||| ||||||||||||| Sbjct 65 TTGTTCACTGATTTTAACCAAGAGCTATATCCATG--ATGTAGTAAATTCACGAAGTTGT 8 Query 494 CTTTCAT 500 ||||||| Sbjct 7 CTTTCAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41248996194 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5