BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G28929.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315590 jgi|Araly1|315590|fgenesh1_pm.C_scaffold_2000623 350 2e-95
> Ahg315590 jgi|Araly1|315590|fgenesh1_pm.C_scaffold_2000623
Length=303
Score = 350 bits (189), Expect = 2e-95
Identities = 269/307 (88%), Gaps = 8/307 (3%)
Strand=Plus/Minus
Query 198 TTATACAACTTGGGTATTACATGGAGAGGATATATGTGTCACAGGGAATGCAAGAGTACC 257
||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||
Sbjct 303 TTATACAACTTGGATACTACACGGAGAGGATATATGTGTCACAGAAAATGCAAGAGTACC 244
Query 258 TTCTGATATTGATCGAGCTGATTTAGATTCAACTTTGAATCTCTTGGATGAT-CTTTTCA 316
|||| |||||||||||||||||||||| |||||| | ||||||||||||||| |||||
Sbjct 243 TTCTAATATTGATCGAGCTGATTTAGACTCAACTATAAATCTCTTGGATGATATTTTTC- 185
Query 317 CCGATATTAATTCGAATTTGTCTGGTGAACACGTA-CCTGGATCGTGTGATCAACCTGTG 375
| |||| || | | ||| ||| ||||||||||| | |||||||||||||| |||||| ||
Sbjct 184 CTGATAGTACTGCAAATATGTTTGGTGAACACG-AGCCTGGATCGTGTGAGCAACCTATG 126
Query 376 GACACTGATATACCATCAACTTCAAGTGGAAATTGTGGAAAAGGAGAAGGTTTTGATGAT 435
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GACACTGATAGACCATCTACTTCAAGTGGAAATTGTGGAAAAGGAGAAGGTTTTGATGAG 66
Query 436 TTGTTTGCTGAATTTATCCAAAAGCTATAT--ATGGGAAGTAATAAGTTCACGAAGTTGT 493
||||| |||| |||| |||| |||||||| ||| | ||| ||| |||||||||||||
Sbjct 65 TTGTTCACTGATTTTAACCAAGAGCTATATCCATG--ATGTAGTAAATTCACGAAGTTGT 8
Query 494 CTTTCAT 500
|||||||
Sbjct 7 CTTTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5