BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G29000.2
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489672 jgi|Araly1|489672|fgenesh2_kg.6__2806__AT5G29000.2 2143 0.0
Ahg317308 jgi|Araly1|317308|fgenesh1_pm.C_scaffold_3000324 484 6e-136
> Ahg489672 jgi|Araly1|489672|fgenesh2_kg.6__2806__AT5G29000.2
Length=1414
Score = 2143 bits (1160), Expect = 0.0
Identities = 1320/1398 (94%), Gaps = 8/1398 (1%)
Strand=Plus/Plus
Query 1 CTGAATTAGGATACTGTGTGGTGTTTTGCAAAACTGCTCTTGTGCTATGACTCTGGCTAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTGAATTAGGATACTGTGTGGTGTTTTGCAAAACTTCTCTTGTGCTATGACTCTGGCTAA 60
Query 61 TGATTTCGGATATTCGACCGCTATGTCTTCATCTTATTCAGCTCTTCATACTAGTGTAGA 120
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 TGATTTCGGATATTCAACCGCTATGTCTTCATCTTTTTCAGCTCTTCATACTACTGTAGA 120
Query 121 AGACAGATACCACAAGTTGCCTAACTCTTTTTGGGTTTCATCAGGTCAGGAACTGATGAA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACAGATACCGCAAGTTGCCTAACTCTTTTTGGGTTTCATCAGGTCAGGAACTGATGAA 180
Query 181 TAACCCTGTACCGTGTCAGTCGGTCTCTGGTGGCAATTCTGGTGGTTATTTGTTTCCTTC 240
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 181 TAACCCTGTACCCTGTCAGTCGGTCTCTGGTGGAAATTCTGGTGGGTATTTGTTTCCTTC 240
Query 241 TTCCTCTGGATACTGCAATGTTTCAGCTGTCTTGCCTCATGGAAGGAATTTGCAAAACCA 300
| ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 241 TCCCTCTGGATTCTGCAATGTTTCAGCTGTCTCGCCTCATGGAAGGAATTCGCAAAACCA 300
Query 301 GCCACCTGTTTCCACCGTGCCTAGAGACAGATTGGCTATGCAGGATTGTCCTTT-GATAG 359
|||||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||
Sbjct 301 GCCACCTGTTTCCACCGTTCCAAGAGAAAGATTGGCTATGCAGGATTGCCCTTTGGA-AG 359
Query 360 CTCA---ATCCTCGTTGATTAATCATCACCCTCAAGAGTTCATAGATCCACTTCATGAGT 416
|||| ||| ||||||||||||||||| ||||||||||| |||||| |||| ||||
Sbjct 360 CTCAGCCCCCCTTGTTGATTAATCATCACCATCAAGAGTTCACAGATCCGCTTCCGGAGT 419
Query 417 TCTTTGATTTCTCTGATCATGTTCCTGTTCAGAATCTACAAGCAGAGAGTAGTGGAGTAA 476
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 420 TCTTTGATTTCTCTGATCATGTTCCTGTTCAGAATCTACAAGCAGAGAGCAGCGGAGTAA 479
Query 477 GGGTGGACTCATCCGTGGAACTTCATAAGAAAAGTGAATGGCAAGATTGGGCAGATCAGC 536
|||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct 480 GGGTGGACTCATCCGTGGAACTCCATAAGAAAAGCGAATGGCAAGAGTGGGCTGATCAGT 539
Query 537 TGATTTCTGTTGACGATGGTTCTGAGCCAAATTGGTCTGAACTTCTTGGAGATTCAAGTT 596
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 TGATTTCTGTTGATGATGGTTCAGAGCCAAATTGGTCTGAACTTCTTGGAGATTCAAGTT 599
Query 597 CCCACAATCCAAATTCAGAGATACCTACACCATTTTTGGATGTACCAAGGCTAGATATAA 656
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||
Sbjct 600 CCCACAATCCAAATTCAGAGATACCTACACCATTTTTGGATGTTCGAAGGCAAGAGATAA 659
Query 657 CAGCTAACCAGCAGCAACAGATGGTTTCATCAGAGGACCAGCTCAGCGGCAGAAACTCAT 716
||| ||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||
Sbjct 660 AAGCCAACCAGCAGCAACAGGTTGTTTCATCAGAGGACCAGCTCAGTGGCAAAAACTCAT 719
Query 717 CATCTAGTGTAGCAACATCTAAACAACGTATGCGTTGGACACCAGAACTTCACGAGGCAT 776
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 CATCTAGTGTAGCAACATCTAAACAACGCATGCGTTGGACACCAGAACTTCACGAGGCAT 779
Query 777 TCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGA 836
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 TCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAACGAGCCACACCTAAGGCTGTTTTGA 839
Query 837 AGCTCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGAAATATA 896
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 AGCTCTTGAATATCCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGAAATACA 899
Query 897 GAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAGGAGAACCTCAAGAGAAGAAGA 956
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 GAACGGCAAGATATAAACCGGATACTTCGGAAGTTACAGGAGAACCTCAAGAGAAGAAGA 959
Query 957 TGACATCTATTGAAGATATCAAATCTCTTGACATGAAAACGAGCGTTGAGATCACACAAG 1016
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 TGACATCTATTGAAGATATCAAATCTCTTGACATGAAAACGAGCGTTGAAATCACACAAG 1019
Query 1017 CTCTACGGTTACAAATGGAAGTGCAGAAACGTCTCCACGAGCAGCTCGAGATCCAACGGT 1076
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1020 CTCTACGGTTACAGATGGAAGTGCAGAAACGTCTCCATGAGCAGCTCGAGATTCAACGGT 1079
Query 1077 CACTGCAGTTACAGATTGAAAAACAGGGCCGGTACCTACAGATGATGTTCGAGAAACAAC 1136
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 CACTGCAGTTACAGATTGAAAAACAGGGCCGATACCTACAGATGATGTTCGAGAAACAAC 1139
Query 1137 AAAAGATACAAGACAACAAGAGCTCTTCTTCAGAAGCATCACCAAAGCAATGCAATGGTT 1196
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1140 AAAAGATACAAGAGAACAAGAGCTCTTCCCCAGAAGCATCACCAAAGCAATGCAACGGTA 1199
Query 1197 CATTTGCAGAAGTTGAAGTTGGTCTTGAGACACTAACAGGGGACCAAAATGAATCTGCTT 1256
|| |||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1200 CAGCAGCAGAAGTCGAAGTTGATCTTGAGACACGAACAGGGGACCAAAATGAACCTGCTT 1259
Query 1257 CAGCATCAAGGAAACGTGTCAGAGAAGATTAAA-GCATGTTTAATTTGATCTCGTTTGAC 1315
||||||||||||||||||||||||||||||||| | | |||||||||||||||||| | |
Sbjct 1260 CAGCATCAAGGAAACGTGTCAGAGAAGATTAAAAGAA-GTTTAATTTGATCTCGTTGG-C 1317
Query 1316 GAAACATGTTTATTGGGAATTAATTGTGGAAACCAACTCCAGTTTTGTTAAAAGAATCTG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GAAACATGTTTATTGGGAATTAATTGTGGAAACCAACTCCAGTTTTGTTAAAAGAATCTG 1377
Query 1376 TTTCTTTCTTAGCTCTGT 1393
|||||||| ||||| |||
Sbjct 1378 TTTCTTTCCTAGCTTTGT 1395
> Ahg317308 jgi|Araly1|317308|fgenesh1_pm.C_scaffold_3000324
Length=1323
Score = 484 bits (262), Expect = 6e-136
Identities = 579/730 (79%), Gaps = 30/730 (4%)
Strand=Plus/Plus
Query 438 TTCCTGTTCAGAATCTACAAGCAGAGAGTAGTGGAGTAAGGGTGGACTCATCCGTGGAAC 497
||||||||| | ||| |||||||||||| | | || || ||| ||||||| ||||
Sbjct 419 TTCCTGTTCCGGATCCACAAGCAGAGAGCA--GCAG-AACTATGGTCTCATCCAAGGAAG 475
Query 498 TTCATAAGAAA-AGTGAATGGCAAGATTGGGCAGATCAGCTGATTTCTGTTGACGATGGT 556
| | | |||| | ||||||| ||| ||||| |||||| ||| ||| ||| |||||
Sbjct 476 TCCTTTTGAAATA-CGAATGGCCAGACTGGGCGGATCAGTTGA--TCT-CTGATGATGG- 530
Query 557 TC-TGAGCCAAATTGGTCTGAACTTCTTGGAGATTC-AAGT-TCCCACAATCCAAATTCA 613
|| ||| ||||||||||| || ||||| || ||| | || | | || ||||| | |||||
Sbjct 531 TCTTGAACCAAATTGGTCGGAGCTTCTAGGTGATCCTAA-TGT-CCTCAATCTAGATTCA 588
Query 614 GAGATACCTA-CACCAT-TTTTGGATGTACCAAGGCTAGATATAACAGCT-AACCAGCAG 670
||||| | | |||| | || | ||| | | |||| ||| ||| | | || | |||
Sbjct 589 AAGATAAC-ACCACCGTCTTCT-GATAAAGCGAGGCAAGAGATAGTATTTGAA-AATCAG 645
Query 671 CAACAGATGGTTTCATCAGA-GGA-CCAGCTCAGCGGCAGAAACTCATCATCTAGTGT-A 727
|| ||| ||| | ||||| | ||| || | | | || ||| ||| || ||| | | |
Sbjct 646 CATCAGGTGGATCCATCA-ATGGAGCC-GTTTAATACCAAAAATTCACCAGCTA-TTTCA 702
Query 728 GCAACATCTAAACAACGTATGCGTTGGACACCAGAACTTCACGAGGCATTCGTTGAAGCT 787
|||||||| ||||| |||||||||||||||||||| || || ||||| |||||||||
Sbjct 703 ATGACATCTAAGCAACGAATGCGTTGGACACCAGAACTCCATGAAGCATTTGTTGAAGCT 762
Query 788 GTTAATCAGCTTGGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCTTGAAT 847
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 763 ATCAATCAGCTCAGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGAAGCTCATGAAT 822
Query 848 AACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGAAATATAGAACGGCAAGG 907
| ||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 823 AGCCCCGGGTTGACCATTTATCATGTCAAAAGCCATTTGCAGAAATACAGAACGGCAAGG 882
Query 908 TATAAACCGGAGACTT-CGGAAGTTACAGGAGAACCTCAAGAGAAGAAGATGACATCTAT 966
|||||||| ||| ||| | ||| ||||| ||||||||||| |||||| ||| | | ||
Sbjct 883 TATAAACCAGAG-CTTTCAGAAAATACAGAAGAACCTCAAGTGAAGAATTTGAAAACCAT 941
Query 967 TGAAGATATCAAATCTCTTGACATGAAAACGAGCGTTGAGATCACACAAGCTCTACGGTT 1026
|||||||||||||||||| ||| |||| |||||| |||| ||||| |||||||||||||
Sbjct 942 TGAAGATATCAAATCTCTGGACTTGAAGACGAGCATTGAAATCACTGAAGCTCTACGGTT 1001
Query 1027 ACAAATGGAAGTGCAGAAACGTCTCCACGAGCAGCTCGAGATCCAACGGTCACTGCAGTT 1086
||| ||| |||| || |||| ||||||||||| || ||||||||| | ||| |||||||
Sbjct 1002 ACAGATGAAAGTTCAAAAACAACTCCACGAGCAACTTGAGATCCAAAGATCATTGCAGTT 1061
Query 1087 ACAGATTGAAAAACAGGGCCGGTACCTACAGATGATG-TTCGAGAAACAACAAAAGATAC 1145
||| || ||| |||| || ||||| || ||||||||| || ||||||||||| ||||| |
Sbjct 1062 ACAAATCGAAGAACAAGGTCGGTATCTTCAGATGATGATT-GAGAAACAACAGAAGATGC 1120
Query 1146 AAGACAACAA 1155
|||| |||||
Sbjct 1121 AAGAGAACAA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5