BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G29015.1

Length=7119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913552 jgi|Araly1|913552|Al_scaffold_0001_3806                    167    1e-39


> Ahg913552 jgi|Araly1|913552|Al_scaffold_0001_3806
Length=261

 Score =  167 bits (90),  Expect = 1e-39
 Identities = 122/137 (89%), Gaps = 3/137 (2%)
 Strand=Plus/Plus

Query  6984  CAAGAGGTCGTATTGTTGGAGTCTCTGATGAAGTACCACTACAAAACACACAAGGAGAGA  7043
             ||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  33    CAA-AGGACGTATTGTTGGAGTCTCTGATGAAGTACCATTACAAAACACACAAGGAGAGA  91

Query  7044  TTCATGTTCCAGAACATACACTCGAAAGCGTCGTACATCTTGATCAAGA-CAATCGACAA  7102
             | ||||||||||||||| |||| |||||| || ||| | |||| || || ||||||| ||
Sbjct  92    TCCATGTTCCAGAACATGCACTAGAAAGCATCATACTTATTGACCA-GAACAATCGAGAA  150

Query  7103  CTAGAAGAACCTGGTGA  7119
             ||||||||| |||||||
Sbjct  151   CTAGAAGAAGCTGGTGA  167



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 269904307716


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5