BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G29015.1 Length=7119 Score E Sequences producing significant alignments: (Bits) Value Ahg913552 jgi|Araly1|913552|Al_scaffold_0001_3806 167 1e-39 > Ahg913552 jgi|Araly1|913552|Al_scaffold_0001_3806 Length=261 Score = 167 bits (90), Expect = 1e-39 Identities = 122/137 (89%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 6984 CAAGAGGTCGTATTGTTGGAGTCTCTGATGAAGTACCACTACAAAACACACAAGGAGAGA 7043 ||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 33 CAA-AGGACGTATTGTTGGAGTCTCTGATGAAGTACCATTACAAAACACACAAGGAGAGA 91 Query 7044 TTCATGTTCCAGAACATACACTCGAAAGCGTCGTACATCTTGATCAAGA-CAATCGACAA 7102 | ||||||||||||||| |||| |||||| || ||| | |||| || || ||||||| || Sbjct 92 TCCATGTTCCAGAACATGCACTAGAAAGCATCATACTTATTGACCA-GAACAATCGAGAA 150 Query 7103 CTAGAAGAACCTGGTGA 7119 ||||||||| ||||||| Sbjct 151 CTAGAAGAAGCTGGTGA 167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 269904307716 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5