BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G29028.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906918 jgi|Araly1|906918|Al_scaffold_0003_4046 148 9e-35
Ahg913551 jgi|Araly1|913551|Al_scaffold_0001_3805 106 5e-22
> Ahg906918 jgi|Araly1|906918|Al_scaffold_0003_4046
Length=411
Score = 148 bits (80), Expect = 9e-35
Identities = 116/134 (87%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 105 GTTTGAGGTTGATAATGAAGTTGGGAAGGTGGTCTCTAACTACATCAAATGATACTTCAC 164
|||||| | |||||||||||||||||||| ||||| || | || ||| ||||||||||
Sbjct 234 GTTTGAAATCGATAATGAAGTTGGGAAGGTAGTCTCCAATTGTATAAAAGGATACTTCAC 293
Query 165 TGAACCTCACGCTAACATCTCACAGGCACCTAAGAAGATTGTTGACACTTGGTTTCACAT 224
| |||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 294 TAAACCCCACGCCAACATCTCACAAATACCTAAGAAGATTGTTGACACTTGGTTTCATAT 353
Query 225 TTTTGCGGTAATTG 238
|||||||||||||
Sbjct 354 GTTTGCGGTAATTG 367
> Ahg913551 jgi|Araly1|913551|Al_scaffold_0001_3805
Length=258
Score = 106 bits (57), Expect = 5e-22
Identities = 72/79 (91%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 437 ATGCCTATGTGGATGAATCCTGAGGTATGGAAGGGCCTCAAAGTTTTTTGGCTTGATCCA 496
||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGCCTATGTGGATGGATCCAGAGGTATGGAAGGGCCTCAAAGTTTTTTGGATTGATCCA 60
Query 497 TAGTCTGAAAATAAA-GTG 514
| |||||| ||||| |||
Sbjct 61 CATTCTGAAGATAAAAGTG 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5