BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G29560.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894836 jgi|Araly1|894836|Al_scaffold_0006_2832 787 0.0
> Ahg894836 jgi|Araly1|894836|Al_scaffold_0006_2832
Length=717
Score = 787 bits (426), Expect = 0.0
Identities = 483/510 (95%), Gaps = 5/510 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACAGATCACGCAAGAGCAGATTCGATTGCTACGGTGGCTGAGAAAGCCCCTGTC 60
||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGACAGAT---GCAGGAGCAGATTCGATTGCTACGGTGGCTGAGAAAGCCCCCGTC 57
Query 61 ACAGCGGAGAGGAGAGTCCGTACTGATCTCGATGATCGTCTCCCTAAACCATATGTGCCT 120
|| |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||
Sbjct 58 ACGGCGGAGAGGAGAGTCCGTACTGATCTTGACGATCGCCTCCCTAAGCCATATGTGCCT 117
Query 121 CGAGCAATGGTTGCACCAGACATGGAAAACGTTAACGGGACAAGAGGACACAAGCACCGG 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 118 CGAGCAATGGTTGCACCTGACATGGAAAACGTTAACGGGACAAGAGGACACAAGCACCAG 177
Query 181 GACATGTCGGTTCTTCAGCAACACATTGCTTTCTTTGACCAGGATGGTGATGGTATCATC 240
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 178 GACATGTCGGTTCTTCAGCAGCACGTTGCTTTCTTTGACCAGGATGGTGATGGTATCATC 237
Query 241 TACCCATCAGAGACATTTAGAGGATTTAGAGCACTTGGTTTCAACT-TGGTTTCTAGTAT 299
|||||||||||||||||||||||||||||||||||||||||||| | || | |||||| |
Sbjct 238 TACCCATCAGAGACATTTAGAGGATTTAGAGCACTTGGTTTCAA-TGTGATCTCTAGTTT 296
Query 300 CTTTCTAACAATCATTGTGCATCTTACAATGAGTTATGCTACATTGCCTACTTGGATGCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTTTCTAACAATCATTGTGCATCTTACAATGAGTTATGCTACATTGCCTACTTGGATGCC 356
Query 360 TTCTCCTACCTTCCCGATTTACATCAAGAACATCCATAGAGCCAAACATGGAAGCGACAC 419
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 TTCTCCTACCTTCCCAATCTACATCAAGAACATCCATAGAGCCAAACATGGAAGCGATAC 416
Query 420 TTCAACTTACGACACAGAAGGAAGGTACATTCCTGCAAATCTTGAGAACATGTTTAGTAA 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 CTCAACTTACGACACCGAAGGAAGGTACATTCCTGCAAATCTTGAGAACATGTTCAGTAA 476
Query 480 GTATGCCCGTACAGTGCCTGACAAGCTAAC 509
|||||| |||||||||||||||||||||||
Sbjct 477 GTATGCACGTACAGTGCCTGACAAGCTAAC 506
Score = 230 bits (124), Expect = 1e-59
Identities = 143/152 (94%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 513 GGCAGCGAGTAAAATGGAGTGGGGAGTACTCTACTTCCTTGCCAAAGACGAGAATGGTCA 572
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 567 GGCAGCGAGTAAAATGGAGTGGGGAGTACTCTACTTACTGGCCAAAGACGAGAATGGTCA 626
Query 573 CTTATCGAAAGAAGCGGT-CAGGAGATGCTTTGACGGGAGCTTGTTCGACTACTGCGCCA 631
||||||||||||||| || | |||||||||| ||||||||||| ||||||||||||||||
Sbjct 627 CTTATCGAAAGAAGCTGTTC-GGAGATGCTTCGACGGGAGCTTATTCGACTACTGCGCCA 685
Query 632 AGGCGAGAGCTTCGACTAAAAAGACTGAATGA 663
||||||||||||| ||||| ||||||||||||
Sbjct 686 AGGCGAGAGCTTCTACTAAGAAGACTGAATGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5