BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G30490.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489679 jgi|Araly1|489679|fgenesh2_kg.6__2813__AT5G30490.2 1301 0.0
> Ahg489679 jgi|Araly1|489679|fgenesh2_kg.6__2813__AT5G30490.2
Length=960
Score = 1301 bits (704), Expect = 0.0
Identities = 885/969 (91%), Gaps = 26/969 (3%)
Strand=Plus/Plus
Query 20 AGTTCCACCAATTAGGGTTTTCGTCCGCCAGAATTTCCA-G-AGA--CGTATCTTGAATC 75
||||||| ||||||||||||||||| ||| ||| ||||| | ||| |||||||||||||
Sbjct 1 AGTTCCATCAATTAGGGTTTTCGTCGGCCGGAAGTTCCAGGTAGAGGCGTATCTTGAATC 60
Query 76 TAGACATGGGATCTCATGAGCAATCGCCTGAGAATAA-CGGTTCGAGCACTGTATCGAAG 134
|||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||||
Sbjct 61 TAGACATGGGGTCTCATGAGCAAACGCCAGAGAA-AAGTGGTTCGAGCACTGTATCGAAA 119
Query 135 AAAGTTGCTGATATTTGGCAACGAATGAACGAAGGAGTTCCAAATAAACGTG-TCAATTT 193
|||||||| || |||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 120 AAAGTTGCGGAGATTTGGCAGCGAATGAACGAAGGAGTTCCAAATAAACG-GCTCAATTT 178
Query 194 CGTCTCAACCGCTTTGCCCGCT-AAAAACTCAGCTAATAGCAATTGGAAAAGTTATCTCG 252
| ||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||| |
Sbjct 179 TGCCTCAACCGCCTTGCCCGCTAAAAAAC-CAGCTAGTAGCAATTGGAAAAGTTATCTTG 237
Query 253 GTGTGAATGTGAAGAAGAAGGATAC-TTGTGTTTCTG-ATGTACAGAA-G-AG-T-G--T 304
||||| || |||| ||||||| | ||| ||||| | ||||||| || | || | | |
Sbjct 238 GTGTGGGTGCAAAGAGGAAGGAT-CATTGCGTTTC-GAATGTACAAAAGGAAGATAGCCT 295
Query 305 TTTGAATCATAGCTGTAGTGAGGAGGCTAAGAGTATTGCTGCAGCCGCTTTAGCTGCGGT 364
|||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 296 TTTGAATCATAGTTGTAGTGAGGATGCTAAAAGTATTGCTGCAGCTGCTTTAGCTGCGGT 355
Query 365 GCGAAACGCAACTGTAACGGCTGCAGCTGCATCGAGCCGGGGCAAGATTGAGATAACCGA 424
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 GAGAAATGCAACTGTAACGGCTGCAGCTGCATCGAGCCGGGGCAAGATTGAGATAACTGA 415
Query 425 GGTCAAAGATTTTGCGGGTCAAGAAATCGAAGTAAAGCGGTTAGTTGAAGCGGATTCAAA 484
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 416 GGTCAAAGACTTTGCGGGTCAAGAAATTGAAGTAAAGCGGTTAGTGGAAGCGGATTCAAA 475
Query 485 GGAAGCATTGGAGAGGGGAAACAAAGGCTCCTCTTCCTCCTCAGCAGCGCCTTCAGCGGT 544
||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 476 GGAAGCATTAGAGCGGGGAAACAAAGGCTCCTCTTCTTCCTCGGCAGCGCCTTCAGCGGT 535
Query 545 TGATGCGGTTCTTGAGCAGATAAAAAAGAAACAAAAGCTGAGTGTTTTGGACAAGACGAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGATGCGGTTCTTGAGCAGATAAAAAAGAAACAAAAGCTGAGTGTTTTGGACAAGACGAA 595
Query 605 GAAAGATTGGGGAGAGTATAAGGAAGAACACAAAGGTGTTGAAGACGAGCTAGATAAGTA 664
|||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 596 GAAAGATTGGGGAGAGTACAAGGAGGAAAACAAAGGAGTTGAAGACGAGCTAGATAAGTA 655
Query 665 CAAGAAAAGCTCGGATCAGTATCTCGACAAAGTTGGTTTCTTGGAGAGAGCTGATTACAG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAAGAAAAGCTCGGATCAGTATCTCGACAAAGTTGGTTTCTTGGAGAGAGCTGATTACAG 715
Query 725 ACAGTTTGAGAAAGAGAGAGACGCTCGTTTAGCTCTTCAGTCCAAGAGAAGACACGATGA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACAGTTTGAGAAAGAGAGAGACGCTCGTTTAGCTCTTCAGTCCAAGAGAAGACACGATGA 775
Query 785 TGTATGAAATGAAATGTGACCGACCCTTTTAACATGTATGAAATCATTTTCTCAAGCCAT 844
||||||||||| | ||| ||| ||||||||||||| ||||||||||||||||| ||
Sbjct 776 TGTATGAAATGTGACC-GAC-GACTCTTTTAACATGTAAGAAATCATTTTCTCAAGTGAT 833
Query 845 TTTGGTCACATTCTTTCCATAGTCTAAACCGAGTTCCCGTTGCATGATTGATTCTGATT- 903
||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| ||||
Sbjct 834 TTTGGTCACATTCTTTCCAGAGTCTTAACCGAGTGCCCGTTGCTTGATTGATT--GATTG 891
Query 904 TTTT-ATGTCTCGTTCATAAGAATTGAGAACATCCTCTCTTGTAGGCCATGGACAATGAA 962
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 892 TTTTTATGACTCGTTCATAAGAATTGAAAACATCCTCTCTTGTAGGCCATGGACTGTGAA 951
Query 963 ATGGGCTTG 971
|||||||||
Sbjct 952 ATGGGCTTG 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5