BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G30495.2
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489677 jgi|Araly1|489677|fgenesh2_kg.6__2811__AT5G30495.2 1242 0.0
> Ahg489677 jgi|Araly1|489677|fgenesh2_kg.6__2811__AT5G30495.2
Length=824
Score = 1242 bits (672), Expect = 0.0
Identities = 776/827 (94%), Gaps = 4/827 (0%)
Strand=Plus/Plus
Query 13 ACAGTTCCATCAATTAGGGCTTTCGTCAGCCGGAATCTCCAGAGAACAAAGGCAATTTAC 72
||||||||||||| ||||| ||||||| |||||||| |||| |||||||||||| ||||
Sbjct 1 ACAGTTCCATCAACTAGGGTTTTCGTCGGCCGGAATTTCCAAAGAACAAAGGCAGTTTAG 60
Query 73 AGTAATGGCAGAGACTAAACCATTGATAGGTCTTACGTGGGAACCAAAGCTTCCAGGCTT 132
||| ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 61 AGTTATGGCAGAGACTAAACCATTGATTGGTCTAAAATGGGAACCAAAGCTTCCAGGCTT 120
Query 133 ATCCTTAGACACGAAAACAT-GTTCCACTTCAAGCAAAAGAGTTGAGAGTCACGAAAGCA 191
|||||||||| ||| ||| | |||||| || ||||||||||| |||||||||||||||||
Sbjct 121 ATCCTTAGACTCGACAAC-TGGTTCCAGTTTAAGCAAAAGAGCTGAGAGTCACGAAAGCA 179
Query 192 GTTCTCTCTGGATGTCTAAGTCAGAGCTTGTTGATGGTCTTTGTCTTCCTCCTAATGATC 251
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 180 GTTCGCTCTGGATGTCTAAGTCAGAGCTTGTCGATGGTCTTTGTCTTCCACCTAATGATC 239
Query 252 CAAAGAAGATTAATAAGATGATTAGGAAACAAATCAAAGACACAACTGGTTCAAACTGGT 311
||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 240 CAAAGAAGATTAACAAGATGATTAGGAAACAAGTCAAAGATACCACTGGTTCAAACTGGT 299
Query 312 TTGATATGCCTGCACCAACAATGACTCCGGAGTTGAAAAGAGATCTTCAGTTGCTTAAGT 371
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 300 TTGATATGCCTGCACCAACAATGACTCCTGAGTTAAAAAGAGATCTTCAGTTGCTTAAGT 359
Query 372 TGAGAACTGTAATGGATCCTGCTGTACACTACAAGAAATCTGTGTCACGGTCAAAGCTAG 431
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 360 TGAGAACTGTAATGGATCCTGCTCTACACTACAAGAAATCTGTGTCACGGTCAAAACTAG 419
Query 432 CTGAAAAATATTTCCAGATTGGTACAGTAATTGAACCAGCTGAAGAGTTCTATGGAAGAT 491
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 CTGAAAAATATTTCCAGATTGGAACAGTAATTGAACCAGCTGAAGAGTTCTATGGAAGAT 479
Query 492 TGACTAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTTTCAGATCCCAAAGTTT 551
| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 480 TAACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTGTCAGATCCCAAAACTT 539
Query 552 CTCAGTACAGGAAGCGTAAAGTTAAGGAGATTGAGGAGAAGAGTAGAGCTGTTACAAATA 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCAGTACAGGAAGCGTAAAGTTAAGGAGATTGAGGAGAAGAGTAGAGCTGTTACAAATA 599
Query 612 AGAAGTGGAAGAAAAAGGGAAACCAAACCACGAACAAAAAGCAAAGAAGGAACTGATTTA 671
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 600 AGAAGTGGAAGAAAAAGGGAAACCAATCCAAGAACAAAAAGCAAAGAAGGAACTGATTTA 659
Query 672 CTTTTGTTAGAATATGATTATAGTTTTGGGATACTTATTTTCTGTTTTGATTAGAATATT 731
|||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||
Sbjct 660 CTTTTGTTAGAATATGATCATAGTTT-GGGATACAT-TTTTCTGTTTTGATTAGAATATT 717
Query 732 GATCATAGTATCGGGACACACTTTCTGTTGGTGCTATAGATTCACCTTACCCTGTAATGA 791
||||||||||||| |||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 718 GATCATAGTATCGTGACACACTTTCTTTTGGTGCTATAGATTCACATTACCTTGTAATGA 777
Query 792 CTCTTGTTGTTTTATGGGCTTCGATTAAAGGATTTCTGTTATCGGTT 838
|| |||||| ||||||||||||| ||||||||||| ||||||| |||
Sbjct 778 CTGTTGTTGGTTTATGGGCTTCGTTTAAAGGATTTGTGTTATCCGTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5