BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G30510.1
Length=1562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489681 jgi|Araly1|489681|fgenesh2_kg.6__2815__AT5G30510.1 2362 0.0
> Ahg489681 jgi|Araly1|489681|fgenesh2_kg.6__2815__AT5G30510.1
Length=1412
Score = 2362 bits (1279), Expect = 0.0
Identities = 1372/1417 (97%), Gaps = 6/1417 (0%)
Strand=Plus/Plus
Query 1 AACCCAACGATAAAACGCAGGAGCCA-TAGAAGAATAACAGATAAAACTCTCTGTGTGAG 59
|||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||
Sbjct 1 AACCCAACGATAAAACGCAGGAGCCATTAGAAG---AACAGATAAAACTCTTTCTGTGAG 57
Query 60 TGAGTGAGACTCAACCATGGCGTCTTTGGCTCAGCAATTCTCGGGATTGAGATGTTCCCC 119
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 58 TGAGTGAGACTCAACAATGGCGTCTTTGGCTCAGCAATTCACGGGATTGAGATGTTCTCC 117
Query 120 ACTCTCTTCTTCTTCTAGGTTATCGAGGAGAGCTTCGAAGAACTTTCCCCAGAACAAATC 179
|||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 118 ACTCTCTTCTTCTTCTAGGTTATCGAGGAGAGTTTCGAAGAATTTTCCGCAGAACAAATC 177
Query 180 TGCCTCTGTTTCTCCGACTATTGTCGCCGCGGTTGCAATGTCTAGCGGTCAAACAAAGGA 239
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 178 TGCCTCCGTTTCTCCGACTATTGTCGCCGCGGTTGCGATGTCTAGCGGTCAAACGAAGGA 237
Query 240 GCGTCTTGAGCTGAAGAAGATGTTCGAAGATGCTTATGAACGATGTAGAACTTCTCCTAT 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 238 GCGTCTCGAGCTGAAGAAGATGTTCGAAGATGCTTATGAACGATGTAGAACTGCTCCTAT 297
Query 300 GGAAGGTGTTGCTTTCACCGTCGACGATTTCGCTGCTGCTATTGAACAATACGACTTCAA 359
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 GGAAGGTGTTGCTTTCACTGTCGACGATTTCGCAGCTGCTATTGAACAATACGACTTCAA 357
Query 360 TTCCGAAATCGGCACTAGGGTAAAAGGAACAGTGTTCAAGACTGATGCAAATGGTGCATT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTCCGAAATCGGCACTAGGGTAAAAGGAACAGTGTTCAAGACTGATGCAAATGGTGCATT 417
Query 420 AGTTGACATTTCTGCAAAGTCATCGGCTTACTTGTCGGTAGAACAAGCGTGTATTCATAG 479
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 418 AGTTGACATTTCTGCAAAGTCATCGGCTTACTTGTCAGTGGAACAAGCGTGTATTCATAG 477
Query 480 AATTAAGCATGTGGAAGAAGCTGGTATTGTACCTGGTATGGTGGAAGAGTTTGTCATCAT 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 478 AATTAAGCATGTGGAAGAAGCTGGTATTGTCCCTGGTATGGTGGAAGAGTTTGTCATCAT 537
Query 540 TGGTGAAAATGAAAGTGATGACAGTTTGCTATTGAGCTTAAGGAATATTCAATACGAACT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CGGTGAAAATGAAAGTGATGACAGTTTGCTATTGAGCTTAAGGAATATTCAATACGAACT 597
Query 600 TGCTTGGGAACGTTGCAGGCAGCTTCAGGCTGAGGATGTTATTGTCAAGGCTAAGGTTAT 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGCTTGGGAACGATGCAGGCAGCTTCAGGCTGAGGATGTTATTGTCAAGGCTAAGGTTAT 657
Query 660 TGGTGCTAACAAAGGTGGATTGGTTGCTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTT 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 658 TGGTGCTAACAAAGGTGGATTGGTGGCTCTTGTGGAAGGTCTTCGTGGATTTGTGCCATT 717
Query 720 TTCGCAGATATCATCGAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAA 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 718 TTCGCAGATTTCATCGAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTCAA 777
Query 780 GTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTGTAGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTGTAGC 837
Query 840 AGATAGCCAAGCTCAGCTTGGAATTGGATCTGTGGTCCTCGGAGTTGTTCAGAGCTTGAA 899
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 838 AGACAGCCAGGCTCAGCTTGGAATTGGATCTGTTGTCCTCGGAGTTGTTCAGAGCTTGAA 897
Query 900 ACCTTATGGTGCCTTCATTGACATTGGTGGAATCAATGGGCTTCTTCATGTCAGTCAGAT 959
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ACCCTATGGTGCCTTCATTGACATTGGTGGAATCAATGGGCTTCTTCATGTCAGTCAGAT 957
Query 960 AAGTCATGACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGGT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CAGTCATGACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGGT 1017
Query 1020 TATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGA 1079
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TATGATACTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGA 1077
Query 1080 GCCAACACCTGGTGATATGATTCGTAACCCAAAACTTGTGTTCGAGAAGGCTGAGGAGAT 1139
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1078 GCCAACACCTGGTGATATGATTCGCAACCCAAAACTTGTGTTCGAGAAGGCTGAGGAGAT 1137
Query 1140 GGCTCAGACATTCAGACAGAGAATTGCGCAAGCAGAAGCCATGGCTCGTGCAGACATGCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGCTCAGACATTCAGACAGAGAATTGCGCAAGCAGAAGCCATGGCTCGTGCAGACATGCT 1197
Query 1200 TCGCTTCCAACCTGAGAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGG 1259
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCGCTTCCAGCCTGAGAGCGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGG 1257
Query 1260 ATCTGAGTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCAGTTGA 1319
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 ATCTGATTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCTGTTGA 1317
Query 1320 TATTTAGATTCTAAAGCTTTAGTGTATTTTTTCATACACAAAAACACCTCCTTGAGCTTA 1379
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1318 TCTTTAGATTCTAAAGCTTTAGTGTATTTTTTCATAGACAAAAACACCTCCTTGAGCTTA 1377
Query 1380 ATTGAATATGTAGTTTACTTCCTACAAGACATTTTAT 1416
||||||||||||||| || ||||||||||||| |||
Sbjct 1378 ATTGAATATGTAGTTG-CT-CCTACAAGACATTGTAT 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58506616320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5