BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G32460.1 Length=1593 Score E Sequences producing significant alignments: (Bits) Value Ahg891079 jgi|Araly1|891079|Al_scaffold_0007_3065 863 0.0 Ahg355494 jgi|Araly1|355494|fgenesh1_pg.C_scaffold_7002667 695 0.0 > Ahg891079 jgi|Araly1|891079|Al_scaffold_0007_3065 Length=849 Score = 863 bits (467), Expect = 0.0 Identities = 555/597 (93%), Gaps = 8/597 (1%) Strand=Plus/Plus Query 1 ATGACTGATGCAATGTTCTCTTCTTCGGCCAAGCCACACTTCATCAAGCCTATGCTTCCA 60 ||| || || |||||||||||||||||||||||||||||||| | |||||||| |||||| Sbjct 1 ATGGCTAATTCAATGTTCTCTTCTTCGGCCAAGCCACACTTCTTGAAGCCTATTCTTCCA 60 Query 61 GGCTTCGAAACCTATATTGTT-ATTCCTAAAGCTTTTTACTCGAACTACTTAGAGGGAAG 119 |||||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| Sbjct 61 GGCTTCAAAACCTATATT-TTGATTCCTAAAGCTTTTTATTCGAAATACTTAGAGGGAAG 119 Query 120 ACAAGAGGGAAACGCTGCAGAACTGAGATCAGACGCCACGGAGATCACTTGGAAAATAAA 179 |||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || || Sbjct 120 ACAAGAGGGAAACGCTGCAGAACTTAGATCAGACGCGTCGGAGATCACCTGGAATATTAA 179 Query 180 GATAGACGGCCGAAGAATGACCAAAGGGTGGGAAGAATTTGCGGTGGCTCACAATCTTCA 239 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 180 GATAGACGGCCGAAGAATGACCAAAGGATGGGAAGAATTTGCGGTGGGTCACAATCTTCA 239 Query 240 GGTCGACGACATTCTTGTTTTCAGACACGAAGGAAATCTCTTGTTTCATGTCACACCTTT 299 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 240 GGTCGGCGACATTCTTGTTTTCAGACACGAAGGGAATCTCTTGTTTCATGTCACACCTTT 299 Query 300 TGGACTGAGTTTTTGTGAGATACTTTACTCACAGAGA-GACGAGAAAGATGTCAAAGACA 358 ||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 300 TGGACTGAGTTGCTGTGAGATACTTTACTCACAGA-ATGACGAGAAAGTTGTCAAAGACA 358 Query 359 CGACGGGAAAGGTTACAAGATCTAGAACGGTGAAGAAAAACGG-AAAAAATGAGTGTTCA 417 |||||||||||||||| ||| || |||||||||| ||||||| |||||||||||||||| Sbjct 359 AGACGGGAAAGGTTACACGATATAAAACGGTGAAG-AAAACGGCAAAAAATGAGTGTTCA 417 Query 418 TCAGTGGACACTGATTTTGTGGTCCCTGTTACAGCCTCAAACCAACGAGTTGATTCATTT 477 ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| Sbjct 418 TCAGTGGACACTGATTTTGTGGTCCCTGTCACCGCCTCAAACCAACGACTTGATTCATTT 477 Query 478 TATCTTCCAAGAGGTTTTACCACATCAAGTGGTTCGAGTAAACTGTGCAATGAGATAATT 537 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 478 TATCTTCCAAGAGGTTTTACCACCTCAAGTGGTTTGAGTAAACTGTGCAATGAGATAATT 537 Query 538 CTAATAGATGAAAAA-GACAGGCCATCGACGCTAAAACTGCGTTACAATAAATCAAG 593 ||||| ||||||||| | |||||||||||||||||||||| ||||| |||||||||| Sbjct 538 CTAATGGATGAAAAAAG-CAGGCCATCGACGCTAAAACTGTGTTACCATAAATCAAG 593 Score = 327 bits (177), Expect = 1e-88 Identities = 225/247 (91%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 689 GAAAAACACCCGTGCTCCGGATTTTTCCTTTGGAGAGGGATGAGGACAACATTGAAAAAC 748 ||||| |||||||||||||||||| |||||||||||| |||||||||||||||| ||| | Sbjct 593 GAAAACCACCCGTGCTCCGGATTTATCCTTTGGAGAGAGATGAGGACAACATTGGAAACC 652 Query 749 ACTCAAAGAAGGTTAAGCAAGAAGTAGAGCATGAGGAGTCTGTGAAAGAAGAGACGAATG 808 |||| |||||| |||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 653 ACTCGAAGAAGATTAAGCAAGAAGTAGAACATGA-GA--CTGTGAAAGAAGAGACGAATG 709 Query 809 TGGAATCAGGAAAGCTTAAAAGAGATAGATTACTGCAGAAAGATCC-CAAAAATTTGTGT 867 |||||||||||||||||||||||||| |||||||| |||||||||| |||||| | |||| Sbjct 710 TGGAATCAGGAAAGCTTAAAAGAGATGGATTACTGAAGAAAGATCCACAAAAAGT-GTGT 768 Query 868 TCTACATCACAAGACACTAAT-TTTGTGGTCCCTGTCACAGCTTCAAACCAACGACATGA 926 ||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| |||| Sbjct 769 TCTTCATCACACGACAC-AATCTTTGTGGTCCCTGGCACAGCTTCAAACCAACGAAATGA 827 Query 927 TTCATTT 933 ||||||| Sbjct 828 TTCATTT 834 > Ahg355494 jgi|Araly1|355494|fgenesh1_pg.C_scaffold_7002667 Length=1500 Score = 695 bits (376), Expect = 0.0 Identities = 458/497 (92%), Gaps = 8/497 (2%) Strand=Plus/Plus Query 1047 AGATGATCGGTTTACTGTCAGGCGAGGCTGGAAAGCTTTCTGCTGCAGGAATGAGCATAA 1106 |||| ||||||||||||||||| ||||||||| || ||||||||||||||||| |||||| Sbjct 870 AGATAATCGGTTTACTGTCAGGAGAGGCTGGAGAGGTTTCTGCTGCAGGAATGGGCATAA 929 Query 1107 AACTGGTTGTTTCTTGAGGCTCATATTGGTCCAAAATGGAAAAACACCCGTACTCCGGAT 1166 |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| Sbjct 930 AACTGGTTGTTTCTTGAGGCTCATATTGGTCCGAAATGGAAAAACACCAGTGCTCCGGAT 989 Query 1167 TTTTCCTTTGGAGA-GATATGAGAACAGCATTGCGAA-GAACTCTAAGAAGATTAAGCAA 1224 |||||||||||||| | |||||| |||||||| ||| |||||| ||| |||| |||||| Sbjct 990 TTTTCCTTTGGAGAAGG-ATGAGAGCAGCATTG-GAAAGAACTCGAAGGAGATCAAGCAA 1047 Query 1225 GAAGTAGAATATGAGTCTGCGAAAGAAGAGAAGAACCTGGAATCATTGTCTTTGTCAGAT 1284 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1048 GAAGTAGAACATGAGTCTGCGAAAGAAGAGAAGAACGTGGAATCATTGTCTTTGTCAGAT 1107 Query 1285 AATTCTAGCTTTGTGGTATCTGTCACAGTTTCTAATCTAAGTGAAGATATACTGCATCTT 1344 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1108 AATTCTAGCTTTGTGGTATCTGTCACAGTTTCTAATCTAAGGGAAGATATACTGTATCTT 1167 Query 1345 CCAATAAGGCTTTCAAGATCAAACTTACTGGACaaaaaaaTTCACGAGATA-GTTTTGAT 1403 |||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||| Sbjct 1168 CCAATAAGGCTTTCAAGATCAAACATACTGGACAAAAAATTTCACGAGATAAGTTT-GAT 1226 Query 1404 GAACAAAGAGGGAAGAACATGGATATTAAGTTTAAAATACAGCAAGTACTCCGGTAGGTT 1463 ||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||| ||| Sbjct 1227 GAACAAACAGGGAAGAACATGGACGTTAAGTTTAAAATACAGTAAGTCCTCCGGTAAGTT 1286 Query 1464 TAGAATCACACGCGGCTGGAAAAGTTTCTGCGAGGCGAACGGTCAAAAAC-CTGGATGTA 1522 ||| ||||||| ||||||||||||||||||||| ||||| |||||||| | ||||||||| Sbjct 1287 TAGGATCACACACGGCTGGAAAAGTTTCTGCGAAGCGAATGGTCAAAA-CGCTGGATGTA 1345 Query 1523 CCTTCTTACTCAAGCTG 1539 |||||||| |||| ||| Sbjct 1346 CCTTCTTATTCAACCTG 1362 Score = 632 bits (342), Expect = 2e-180 Identities = 409/441 (93%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 1 ATGACTGATGCAATGTTCTCTTCTTCGGCCAAGCCACACTTCATCAAGCCTATGCTTCCA 60 ||| || || |||||||||||||||||||||||||||||||| | |||||||| |||||| Sbjct 1 ATGGCTAATTCAATGTTCTCTTCTTCGGCCAAGCCACACTTCTTGAAGCCTATTCTTCCA 60 Query 61 GGCTTCGAAACCTATATTGTT-ATTCCTAAAGCTTTTTACTCGAACTACTTAGAGGGAAG 119 |||||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| Sbjct 61 GGCTTCAAAACCTATATT-TTGATTCCTAAAGCTTTTTATTCGAAATACTTAGAGGGAAG 119 Query 120 ACAAGAGGGAAACGCTGCAGAACTGAGATCAGACGCCACGGAGATCACTTGGAAAATAAA 179 |||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || || Sbjct 120 ACAAGAGGGAAACGCTGCAGAACTTAGATCAGACGCGTCGGAGATCACCTGGAATATTAA 179 Query 180 GATAGACGGCCGAAGAATGACCAAAGGGTGGGAAGAATTTGCGGTGGCTCACAATCTTCA 239 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 180 GATAGACGGCCGAAGAATGACCAAAGGATGGGAAGAATTTGCGGTGGGTCACAATCTTCA 239 Query 240 GGTCGACGACATTCTTGTTTTCAGACACGAAGGAAATCTCTTGTTTCATGTCACACCTTT 299 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 240 GGTCGGCGACATTCTTGTTTTCAGACACGAAGGGAATCTCTTGTTTCATGTCACACCTTT 299 Query 300 TGGACTGAGTTTTTGTGAGATACTTTACTCACAGAGA-GACGAGAAAGATGTCAAAGACA 358 ||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 300 TGGACTGAGTTGCTGTGAGATACTTTACTCACAGA-ATGACGAGAAAGTTGTCAAAGACA 358 Query 359 CGACGGGAAAGGTTACAAGATCTAGAACGGTGAAGAAAAACGG-AAAAAATGAGTGTTCA 417 |||||||||||||||| ||| || |||||||||||||| ||| |||||||||||||||| Sbjct 359 AGACGGGAAAGGTTACACGATATAAAACGGTGAAGAAAA-CGGCAAAAAATGAGTGTTCA 417 Query 418 TCAGTGGACACTGATTTTGTG 438 ||||||||||||||||||||| Sbjct 418 TCAGTGGACACTGATTTTGTG 438 Score = 446 bits (241), Expect = 3e-124 Identities = 297/323 (92%), Gaps = 7/323 (2%) Strand=Plus/Plus Query 689 GAAAAACACCCGTGCTCCGGATTTTTCCTTTGGAGAGGGATGAGGACAACATTGAAAAAC 748 ||||| |||||||||||||||||| |||||||||||| |||||||||||||||| ||| | Sbjct 554 GAAAACCACCCGTGCTCCGGATTTATCCTTTGGAGAGAGATGAGGACAACATTGGAAACC 613 Query 749 ACTCAAAGAAGGTTAAGCAAGAAGTAGAGCATGAGGAGTCTGTGAAAGAAGAGACGAATG 808 |||| |||||| |||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 614 ACTCGAAGAAGATTAAGCAAGAAGTAGAACATGA-GA--CTGTGAAAGAAGAGACGAATG 670 Query 809 TGGAATCAGGAAAGCTTAAAAGAGATAGATTACTGCAGAAAGATCC-CAAAAATTTGTGT 867 |||||||||||||||||||||||||| |||||||| |||||||||| |||||| | |||| Sbjct 671 TGGAATCAGGAAAGCTTAAAAGAGATGGATTACTGAAGAAAGATCCACAAAAAGT-GTGT 729 Query 868 TCTACATCACAAGACACTAAT-TTTGTGGTCCCTGTCACAGCTTCAAACCAACGACATGA 926 ||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| |||| Sbjct 730 TCTTCATCACACGACAC-AATCTTTGTGGTCCCTGGCACAGCTTCAAACCAACGAAATGA 788 Query 927 TTCATTTCATCTTCCAAAAGGTTTAACCACCTCAAGTGGTCTGAGTAAACTGTGCAAGAA 986 |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 789 TTCATTTCATCTTCCAAAAGGTTTTACTACCTCAAGTGGTCTGAGCAAACTGTGCAAGAA 848 Query 987 GATTATTTTTATGGATCAAAAAG 1009 |||||||||||||||| |||||| Sbjct 849 GATTATTTTTATGGATGAAAAAG 871 Score = 176 bits (95), Expect = 4e-43 Identities = 110/117 (94%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 478 TATCTTCCAAGAGGTTTTACCACATCAAGTGGTTCGAGTAAACTGTGCAATGAGATAATT 537 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 439 TATCTTCCAAGAGGTTTTACCACCTCAAGTGGTTTGAGTAAACTGTGCAATGAGATAATT 498 Query 538 CTAATAGATGAAAAA-GACAGGCCATCGACGCTAAAACTGCGTTACAATAAATCAAG 593 ||||| ||||||||| | |||||||||||||||||||||| ||||| |||||||||| Sbjct 499 CTAATGGATGAAAAAAG-CAGGCCATCGACGCTAAAACTGTGTTACCATAAATCAAG 554 Score = 75.0 bits (40), Expect = 2e-12 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 1539 GCATCTTTCGATGACTCGGTTTGACCAAGACGGAGTAGCATGGGACAAGAAGTGA 1593 ||||||||||| |||| ||| | ||||||||||||||||||||||||||||||| Sbjct 1432 GCATCTTTCGACAACTCAGTTGGTCCAAGACGGAGTAGCATGGGACAAGAAGTGA 1486 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59687413915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5