BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G32460.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891079 jgi|Araly1|891079|Al_scaffold_0007_3065 863 0.0
Ahg355494 jgi|Araly1|355494|fgenesh1_pg.C_scaffold_7002667 695 0.0
> Ahg891079 jgi|Araly1|891079|Al_scaffold_0007_3065
Length=849
Score = 863 bits (467), Expect = 0.0
Identities = 555/597 (93%), Gaps = 8/597 (1%)
Strand=Plus/Plus
Query 1 ATGACTGATGCAATGTTCTCTTCTTCGGCCAAGCCACACTTCATCAAGCCTATGCTTCCA 60
||| || || |||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1 ATGGCTAATTCAATGTTCTCTTCTTCGGCCAAGCCACACTTCTTGAAGCCTATTCTTCCA 60
Query 61 GGCTTCGAAACCTATATTGTT-ATTCCTAAAGCTTTTTACTCGAACTACTTAGAGGGAAG 119
|||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 GGCTTCAAAACCTATATT-TTGATTCCTAAAGCTTTTTATTCGAAATACTTAGAGGGAAG 119
Query 120 ACAAGAGGGAAACGCTGCAGAACTGAGATCAGACGCCACGGAGATCACTTGGAAAATAAA 179
|||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || ||
Sbjct 120 ACAAGAGGGAAACGCTGCAGAACTTAGATCAGACGCGTCGGAGATCACCTGGAATATTAA 179
Query 180 GATAGACGGCCGAAGAATGACCAAAGGGTGGGAAGAATTTGCGGTGGCTCACAATCTTCA 239
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 180 GATAGACGGCCGAAGAATGACCAAAGGATGGGAAGAATTTGCGGTGGGTCACAATCTTCA 239
Query 240 GGTCGACGACATTCTTGTTTTCAGACACGAAGGAAATCTCTTGTTTCATGTCACACCTTT 299
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGTCGGCGACATTCTTGTTTTCAGACACGAAGGGAATCTCTTGTTTCATGTCACACCTTT 299
Query 300 TGGACTGAGTTTTTGTGAGATACTTTACTCACAGAGA-GACGAGAAAGATGTCAAAGACA 358
||||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 300 TGGACTGAGTTGCTGTGAGATACTTTACTCACAGA-ATGACGAGAAAGTTGTCAAAGACA 358
Query 359 CGACGGGAAAGGTTACAAGATCTAGAACGGTGAAGAAAAACGG-AAAAAATGAGTGTTCA 417
|||||||||||||||| ||| || |||||||||| ||||||| ||||||||||||||||
Sbjct 359 AGACGGGAAAGGTTACACGATATAAAACGGTGAAG-AAAACGGCAAAAAATGAGTGTTCA 417
Query 418 TCAGTGGACACTGATTTTGTGGTCCCTGTTACAGCCTCAAACCAACGAGTTGATTCATTT 477
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 418 TCAGTGGACACTGATTTTGTGGTCCCTGTCACCGCCTCAAACCAACGACTTGATTCATTT 477
Query 478 TATCTTCCAAGAGGTTTTACCACATCAAGTGGTTCGAGTAAACTGTGCAATGAGATAATT 537
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 478 TATCTTCCAAGAGGTTTTACCACCTCAAGTGGTTTGAGTAAACTGTGCAATGAGATAATT 537
Query 538 CTAATAGATGAAAAA-GACAGGCCATCGACGCTAAAACTGCGTTACAATAAATCAAG 593
||||| ||||||||| | |||||||||||||||||||||| ||||| ||||||||||
Sbjct 538 CTAATGGATGAAAAAAG-CAGGCCATCGACGCTAAAACTGTGTTACCATAAATCAAG 593
Score = 327 bits (177), Expect = 1e-88
Identities = 225/247 (91%), Gaps = 7/247 (3%)
Strand=Plus/Plus
Query 689 GAAAAACACCCGTGCTCCGGATTTTTCCTTTGGAGAGGGATGAGGACAACATTGAAAAAC 748
||||| |||||||||||||||||| |||||||||||| |||||||||||||||| ||| |
Sbjct 593 GAAAACCACCCGTGCTCCGGATTTATCCTTTGGAGAGAGATGAGGACAACATTGGAAACC 652
Query 749 ACTCAAAGAAGGTTAAGCAAGAAGTAGAGCATGAGGAGTCTGTGAAAGAAGAGACGAATG 808
|||| |||||| |||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 653 ACTCGAAGAAGATTAAGCAAGAAGTAGAACATGA-GA--CTGTGAAAGAAGAGACGAATG 709
Query 809 TGGAATCAGGAAAGCTTAAAAGAGATAGATTACTGCAGAAAGATCC-CAAAAATTTGTGT 867
|||||||||||||||||||||||||| |||||||| |||||||||| |||||| | ||||
Sbjct 710 TGGAATCAGGAAAGCTTAAAAGAGATGGATTACTGAAGAAAGATCCACAAAAAGT-GTGT 768
Query 868 TCTACATCACAAGACACTAAT-TTTGTGGTCCCTGTCACAGCTTCAAACCAACGACATGA 926
||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 769 TCTTCATCACACGACAC-AATCTTTGTGGTCCCTGGCACAGCTTCAAACCAACGAAATGA 827
Query 927 TTCATTT 933
|||||||
Sbjct 828 TTCATTT 834
> Ahg355494 jgi|Araly1|355494|fgenesh1_pg.C_scaffold_7002667
Length=1500
Score = 695 bits (376), Expect = 0.0
Identities = 458/497 (92%), Gaps = 8/497 (2%)
Strand=Plus/Plus
Query 1047 AGATGATCGGTTTACTGTCAGGCGAGGCTGGAAAGCTTTCTGCTGCAGGAATGAGCATAA 1106
|||| ||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct 870 AGATAATCGGTTTACTGTCAGGAGAGGCTGGAGAGGTTTCTGCTGCAGGAATGGGCATAA 929
Query 1107 AACTGGTTGTTTCTTGAGGCTCATATTGGTCCAAAATGGAAAAACACCCGTACTCCGGAT 1166
|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 930 AACTGGTTGTTTCTTGAGGCTCATATTGGTCCGAAATGGAAAAACACCAGTGCTCCGGAT 989
Query 1167 TTTTCCTTTGGAGA-GATATGAGAACAGCATTGCGAA-GAACTCTAAGAAGATTAAGCAA 1224
|||||||||||||| | |||||| |||||||| ||| |||||| ||| |||| ||||||
Sbjct 990 TTTTCCTTTGGAGAAGG-ATGAGAGCAGCATTG-GAAAGAACTCGAAGGAGATCAAGCAA 1047
Query 1225 GAAGTAGAATATGAGTCTGCGAAAGAAGAGAAGAACCTGGAATCATTGTCTTTGTCAGAT 1284
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1048 GAAGTAGAACATGAGTCTGCGAAAGAAGAGAAGAACGTGGAATCATTGTCTTTGTCAGAT 1107
Query 1285 AATTCTAGCTTTGTGGTATCTGTCACAGTTTCTAATCTAAGTGAAGATATACTGCATCTT 1344
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1108 AATTCTAGCTTTGTGGTATCTGTCACAGTTTCTAATCTAAGGGAAGATATACTGTATCTT 1167
Query 1345 CCAATAAGGCTTTCAAGATCAAACTTACTGGACaaaaaaaTTCACGAGATA-GTTTTGAT 1403
|||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||
Sbjct 1168 CCAATAAGGCTTTCAAGATCAAACATACTGGACAAAAAATTTCACGAGATAAGTTT-GAT 1226
Query 1404 GAACAAAGAGGGAAGAACATGGATATTAAGTTTAAAATACAGCAAGTACTCCGGTAGGTT 1463
||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||| |||
Sbjct 1227 GAACAAACAGGGAAGAACATGGACGTTAAGTTTAAAATACAGTAAGTCCTCCGGTAAGTT 1286
Query 1464 TAGAATCACACGCGGCTGGAAAAGTTTCTGCGAGGCGAACGGTCAAAAAC-CTGGATGTA 1522
||| ||||||| ||||||||||||||||||||| ||||| |||||||| | |||||||||
Sbjct 1287 TAGGATCACACACGGCTGGAAAAGTTTCTGCGAAGCGAATGGTCAAAA-CGCTGGATGTA 1345
Query 1523 CCTTCTTACTCAAGCTG 1539
|||||||| |||| |||
Sbjct 1346 CCTTCTTATTCAACCTG 1362
Score = 632 bits (342), Expect = 2e-180
Identities = 409/441 (93%), Gaps = 6/441 (1%)
Strand=Plus/Plus
Query 1 ATGACTGATGCAATGTTCTCTTCTTCGGCCAAGCCACACTTCATCAAGCCTATGCTTCCA 60
||| || || |||||||||||||||||||||||||||||||| | |||||||| ||||||
Sbjct 1 ATGGCTAATTCAATGTTCTCTTCTTCGGCCAAGCCACACTTCTTGAAGCCTATTCTTCCA 60
Query 61 GGCTTCGAAACCTATATTGTT-ATTCCTAAAGCTTTTTACTCGAACTACTTAGAGGGAAG 119
|||||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 GGCTTCAAAACCTATATT-TTGATTCCTAAAGCTTTTTATTCGAAATACTTAGAGGGAAG 119
Query 120 ACAAGAGGGAAACGCTGCAGAACTGAGATCAGACGCCACGGAGATCACTTGGAAAATAAA 179
|||||||||||||||||||||||| ||||||||||| |||||||||| ||||| || ||
Sbjct 120 ACAAGAGGGAAACGCTGCAGAACTTAGATCAGACGCGTCGGAGATCACCTGGAATATTAA 179
Query 180 GATAGACGGCCGAAGAATGACCAAAGGGTGGGAAGAATTTGCGGTGGCTCACAATCTTCA 239
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 180 GATAGACGGCCGAAGAATGACCAAAGGATGGGAAGAATTTGCGGTGGGTCACAATCTTCA 239
Query 240 GGTCGACGACATTCTTGTTTTCAGACACGAAGGAAATCTCTTGTTTCATGTCACACCTTT 299
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GGTCGGCGACATTCTTGTTTTCAGACACGAAGGGAATCTCTTGTTTCATGTCACACCTTT 299
Query 300 TGGACTGAGTTTTTGTGAGATACTTTACTCACAGAGA-GACGAGAAAGATGTCAAAGACA 358
||||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 300 TGGACTGAGTTGCTGTGAGATACTTTACTCACAGA-ATGACGAGAAAGTTGTCAAAGACA 358
Query 359 CGACGGGAAAGGTTACAAGATCTAGAACGGTGAAGAAAAACGG-AAAAAATGAGTGTTCA 417
|||||||||||||||| ||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 359 AGACGGGAAAGGTTACACGATATAAAACGGTGAAGAAAA-CGGCAAAAAATGAGTGTTCA 417
Query 418 TCAGTGGACACTGATTTTGTG 438
|||||||||||||||||||||
Sbjct 418 TCAGTGGACACTGATTTTGTG 438
Score = 446 bits (241), Expect = 3e-124
Identities = 297/323 (92%), Gaps = 7/323 (2%)
Strand=Plus/Plus
Query 689 GAAAAACACCCGTGCTCCGGATTTTTCCTTTGGAGAGGGATGAGGACAACATTGAAAAAC 748
||||| |||||||||||||||||| |||||||||||| |||||||||||||||| ||| |
Sbjct 554 GAAAACCACCCGTGCTCCGGATTTATCCTTTGGAGAGAGATGAGGACAACATTGGAAACC 613
Query 749 ACTCAAAGAAGGTTAAGCAAGAAGTAGAGCATGAGGAGTCTGTGAAAGAAGAGACGAATG 808
|||| |||||| |||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 614 ACTCGAAGAAGATTAAGCAAGAAGTAGAACATGA-GA--CTGTGAAAGAAGAGACGAATG 670
Query 809 TGGAATCAGGAAAGCTTAAAAGAGATAGATTACTGCAGAAAGATCC-CAAAAATTTGTGT 867
|||||||||||||||||||||||||| |||||||| |||||||||| |||||| | ||||
Sbjct 671 TGGAATCAGGAAAGCTTAAAAGAGATGGATTACTGAAGAAAGATCCACAAAAAGT-GTGT 729
Query 868 TCTACATCACAAGACACTAAT-TTTGTGGTCCCTGTCACAGCTTCAAACCAACGACATGA 926
||| ||||||| ||||| ||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 730 TCTTCATCACACGACAC-AATCTTTGTGGTCCCTGGCACAGCTTCAAACCAACGAAATGA 788
Query 927 TTCATTTCATCTTCCAAAAGGTTTAACCACCTCAAGTGGTCTGAGTAAACTGTGCAAGAA 986
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 789 TTCATTTCATCTTCCAAAAGGTTTTACTACCTCAAGTGGTCTGAGCAAACTGTGCAAGAA 848
Query 987 GATTATTTTTATGGATCAAAAAG 1009
|||||||||||||||| ||||||
Sbjct 849 GATTATTTTTATGGATGAAAAAG 871
Score = 176 bits (95), Expect = 4e-43
Identities = 110/117 (94%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 478 TATCTTCCAAGAGGTTTTACCACATCAAGTGGTTCGAGTAAACTGTGCAATGAGATAATT 537
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 439 TATCTTCCAAGAGGTTTTACCACCTCAAGTGGTTTGAGTAAACTGTGCAATGAGATAATT 498
Query 538 CTAATAGATGAAAAA-GACAGGCCATCGACGCTAAAACTGCGTTACAATAAATCAAG 593
||||| ||||||||| | |||||||||||||||||||||| ||||| ||||||||||
Sbjct 499 CTAATGGATGAAAAAAG-CAGGCCATCGACGCTAAAACTGTGTTACCATAAATCAAG 554
Score = 75.0 bits (40), Expect = 2e-12
Identities = 50/55 (91%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1539 GCATCTTTCGATGACTCGGTTTGACCAAGACGGAGTAGCATGGGACAAGAAGTGA 1593
||||||||||| |||| ||| | |||||||||||||||||||||||||||||||
Sbjct 1432 GCATCTTTCGACAACTCAGTTGGTCCAAGACGGAGTAGCATGGGACAAGAAGTGA 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5