BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G32620.1
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497026 jgi|Araly1|497026|fgenesh2_kg.8__2842__AT5G32620.1 390 8e-108
> Ahg497026 jgi|Araly1|497026|fgenesh2_kg.8__2842__AT5G32620.1
Length=879
Score = 390 bits (211), Expect = 8e-108
Identities = 260/283 (92%), Gaps = 5/283 (2%)
Strand=Plus/Plus
Query 1 ATGGATGATATGAATCCATTCTATCAGTCATCGGGTTTTATGGACCTGTTGCAAAGTCAA 60
|||||||||||||||||||| ||||| ||||||||||| ||| |||| ||||||||||||
Sbjct 1 ATGGATGATATGAATCCATTTTATCACTCATCGGGTTTCATGAACCTATTGCAAAGTCAA 60
Query 61 CAAGAAGACATGTCTCAGTTTGCAAGTGGGTCAACTGAAGTCCCAGCTTTTAGTAGTCAA 120
||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||
Sbjct 61 CAAGAAGACATGTCTCAGTTTGCAAGTGGATCAACTGAAGTCCCAACATTTAGTACTCAA 120
Query 121 CTGTCTGAAGAAGGAAGTG-AGCTTGAAGGAAGTGAAG-AT--GAAGTCAAACCGAAGCA 176
||||||||||||||||||| || ||||||| ||||| || || |||||||| |||||
Sbjct 121 CTGTCTGAAGAAGGAAGTGAAG-AAGAAGGAAATGAAGCATCAGATGTCAAACCAAAGCA 179
Query 177 AAGTATATCACGAAAGAAATGGACAGCAAAAGAAGATATTGTTCTCGTTAGTGCTTGGCT 236
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 AAGTATATCACGAAAGAAATGGACAGCAAAAGAAGATATTGTTCTCGTCAGTGCTTGGCT 239
Query 237 CAATCCCAGCAAGGATCCTGTGATTGGTAATGACCAACAAGCA 279
||| | ||||||||||||||||||||||||||||||||||||
Sbjct 240 TAATACAAGCAAGGATCCTGTGATTGGTAATGACCAACAAGCA 282
Score = 359 bits (194), Expect = 2e-98
Identities = 258/289 (89%), Gaps = 4/289 (1%)
Strand=Plus/Plus
Query 456 GATCTACTTCAATGATACCAAGAAGAATTTCACTTTAGATCATGCTTGGAGAGAATTAAG 515
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 474 GATCTACTACAATGATACCAAGAAGAATTTCACTTTAGATCATGCATGGAGAGAGTTAAA 533
Query 516 GTATGACCAGAAATGGTGTGAAGC-TACAAGTCGTAAAGGAGATGAAAATGCTAAAAGAA 574
|| ||| ||||||||||||| | | || | ||| |||| ||||||||||||||||||
Sbjct 534 GTTTGATCAGAAATGGTGTG-ATCAAACTACTCGGGGAGGAAATGAAAATGCTAAAAGAA 592
Query 575 GGAAGTGTGGGGATGGTAATGCAAGTTCCCATCCAATCCATGTTGAAGATGATTCAATCA 634
|||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| |||
Sbjct 593 GGAAGTGTGGGGATGGTAATGCCAGTTCCCAGCCAATCAATGTTGAAGATGATTCAGTCA 652
Query 635 TGAGTCGTCCTCCTGGTGTGAAGGCAGCCAAAGCTAAAGGAAGGAAGTCAGCCATTGTAA 694
||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 653 TGAGTCGACCTCCTGGTGTGAAGGCAGCCAAAGCGAAAGGAAGGAAGTCAGCCACTGTTA 712
Query 695 AAGAAGGAAAGAAGCCAGCCACAGTTAAAG-ATGATTCAGGCCAGTCTG 742
| |||||||||||||||||||| | ||||| | || ||||||||||||
Sbjct 713 ACGAAGGAAAGAAGCCAGCCACGGGTAAAGGA-GAAGCAGGCCAGTCTG 760
Score = 161 bits (87), Expect = 7e-39
Identities = 110/121 (91%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 787 GATCGCAAAGAAAAGCAAAGCAAGCATCAACA-GCTTGAAAGACTACTTTCAAAAACTGA 845
||||||||||| |||||||||||| ||| | | ||||||||| |||| ||||| ||||||
Sbjct 760 GATCGCAAAGAGAAGCAAAGCAAGTATC-AGATGCTTGAAAGTCTACATTCAAGAACTGA 818
Query 846 GCCTCTTTCGGACATTGACTTGTTCCTAAAAAATAAGCTAATCACGGATCTTTGGTCATA 905
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 819 GCCTCTTTCGGACATTTACTTGTTCCTAAAAAATAAGCTAATCACGGAGCTTTGGTCCTA 878
Query 906 A 906
|
Sbjct 879 A 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33586289877
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5