BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33290.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493575 jgi|Araly1|493575|fgenesh2_kg.7__3008__AT5G33290.1 2577 0.0
> Ahg493575 jgi|Araly1|493575|fgenesh2_kg.7__3008__AT5G33290.1
Length=1885
Score = 2577 bits (1395), Expect = 0.0
Identities = 1748/1908 (92%), Gaps = 66/1908 (3%)
Strand=Plus/Plus
Query 2 AACAAGTTGCTTGGTGATGC-AAAACTCATTTCTCCTCCCACTAATGATCGATGATAGAG 60
||||||||||||||||| | ||||||||||||| | ||||||||||| |||||||||
Sbjct 1 AACAAGTTGCTTGGTGA-ACTAAAACTCATTTCT--T-CCACTAATGAT--ATGATAGAG 54
Query 61 ACATAACAAAGAAtctttcatgacttttcttctttttctcctcacttccaaaaattctc- 119
||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 55 ACATACCAAAGAATCTTTCATGACTTTTCTTC-TTTTCTCCTCACTTCC-AAAATTCTCT 112
Query 120 tcttgtcttcctcttAAGATG-AAAGAATC-ATAAAAGGAACCCAAAGAAAAGCAAA-AA 176
|| |||||||||||||||| | |||||||| | ||||||||||||||||||| ||| ||
Sbjct 113 TC-TGTCTTCCTCTTAAGA-GTAAAGAATCAAAAAAAGGAACCCAAAGAAAA-AAAATAA 169
Query 177 CATAACCATGGCTGCTCCAAGATCAAGAAGATGctctctttctctcttaactcttttctc 236
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 170 CATAGCCATGGCTGCTCCAAGATCAAGAAGATGCTCTCTTTCTCTCTTAACCCTTATCTC 229
Query 237 catcactcttattcttatttctgtttcactctttgtctcCACAAAACCAGCTAATAAGCC 296
|||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 230 CATCTCTCTTATTCTTATTTCTGTTTCACTCTTTGTCTCCACAAAACCAACTAGTAAGCC 289
Query 297 TTTCCTCGATTACAGAAACCAGTTTTCTATTTCCATCTCTA-TC-TC-TTCTCC-TCT-T 351
|| | |||||||||||||| || ||| |||| |||||| || || |||||| ||| |
Sbjct 290 CTTAATTGATTACAGAAACCAATTCTCTGTTTCTATCTCTTCTCCTCCTTCTCCATCTCT 349
Query 352 ----GAACA-AA-A-CACAACAAACACTAGT-TT-----------------T-GTCT--- 382
||||| || | ||||||| |||||||| || | ||||
Sbjct 350 TCTTGAACAGAACAACACAACACACACTAGTCTTAGCAACACAACAAACACTAGTCTAAT 409
Query 383 C--AGCCTCTCCTCCTTTGTCCCCTCTTGGTCAGAGCAACACAACAAACACTAttcttgc 440
| ||||||||||||||| || | ||| || || | ||| ||||||||||||| ||||||
Sbjct 410 CTCAGCCTCTCCTCCTTTTTCTCATCTCGGACAAAACAATACAACAAACACTACTCTTGC 469
Query 441 ttcttcttcttcttcttcctctttttctGATCACCAAAACCAAAATAAGTCTCCAAGTCC 500
|||||| || || ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 470 TTCTTCATC--CT-CTT--T-TT---CTGATCACCAAAACCAAAATAAGTCTCCAAGTCC 520
Query 501 TACAAGTaaaaaaaTTGTTATCAGGAAAAGAAGTGGGTTAGACAAAATAGAATCAGATTT 560
||||||||||||| |||| || | ||||||||||||||| || |||||||||| ||||||
Sbjct 521 TACAAGTAAAAAAGTTGTAATTAAGAAAAGAAGTGGGTTGGATAAAATAGAATTAGATTT 580
Query 561 AGCAAAAGCAAGAGCAGCAATTAAGAAGGCAGCTTCTACACAAAATTATGTCAGCTCTCT 620
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 581 AGCAAAAGCAAGAGCAGCAATTAAGAAGGCAGCTTCTACACAAAATTATATCAGCTCTCT 640
Query 621 CTATAAAAATCCAGCCGCCTTTCATCAGAGTCACACGGAGATGATGAATCGTTTTAAGGT 680
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 641 CTACAAAAACCCAGCCGCCTTTCATCAGAGTCACACGGAAATGATGAATCGTTTTAAGGT 700
Query 681 GTGGACATACACAGAGGGAGAGGTCCCATTGTTCCATGACGGCCCTGTGAATGACATTTA 740
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 701 GTGGACATACACAGAGGGAGAGGTCCCCCTGTTCCATGACGGCCCTGTGAATGACATTTA 760
Query 741 CGGCATAGAAGGACAATTCATGGACGAAATGTGCGTGGACGGACCGAAGAGTAGAAGCCG 800
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 CGGTATAGAAGGACAGTTCATGGACGAAATGTGCGTGGACGGACCGAAGAGTAGAAGCCG 820
Query 801 TTTTCGGGCAGATCGACCCGAGAATGCTCATGTTTTCTTCATACCATTTAGCGTCGCCAA 860
||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 821 TTTTCGGGCGGATCGCCCCGAGGATGCTCACGTTTTCTTCATACCATTTAGCGTCGCCAA 880
Query 861 GGTCATCCACTTCGTCTACAAGCCCATCACCTCTGTCGAAGGGTTTTCGCGGGCTCGCCT 920
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 881 GGTCATCCACTTCGTCTACAAGCCCATCACCTCTGTCGAAGGATTTTCGCGGGCTCGCCT 940
Query 921 ACACCGCCTTATAGAGGATTATGTTGATGTAGTTGCTACTAAGCATC-CATATTGGAACC 979
|||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 941 ACACCGTCTTATAGAGGATTATGTTGATGTAGTTGCTACTAAGCATCGC-TATTGGAACA 999
Query 980 GAAGCCAAGGAGGCGACCATTTCATGGTATCATGCCATGACTGGGCACCAGACGTGATTG 1039
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1000 GAAGCCAAGGTGGCGACCATTTCATGGTATCATGCCATGACTGGGCACCAGACGTGATCG 1059
Query 1040 ATGGGAATCCAAAGTTGTTTGAAAAATTCATTAGGGGACTTTGCAATGCTAACACCTCGG 1099
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1060 ATGGGAATCCAAAGTTGTTTGAAAAATTCATAAGGGGTCTTTGCAATGCTAACACATCGG 1119
Query 1100 AAGGTTTCCGACCTAACGTGGACGTATCCATTCCGGAGATCTACCTTCCTAAAGGTAAAT 1159
|||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1120 AAGGATTCCGGCCTAACGTGGATGTATCCATTCCGGAGATATACCTTCCTAAAGGTAAAT 1179
Query 1160 TGGGTCCGTCTTTTCTCGGGAAATCACCGCGAGTTCGATCTATACTCGCATTTTTCGCTG 1219
||||||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||
Sbjct 1180 TGGGTCCGTCTTTTCTCGGAAAATCACCGAGAATTCGATCTATACTCGCATTTTTTGCTG 1239
Query 1220 GAAGAAGTCACGGTGAAATCCGAAAAATCTTATTTCAACATTGGAAAGAAATGGACAATG 1279
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1240 GAAGAAGTCACGGTGAAATCCGAAAAATCTTATTTAAACATTGGAAAGAAATGGACAATG 1299
Query 1280 AAGTCCAAGTCTATGATCGTCTTCCGCCAGGAAAAGACTATACAAAAACTATGGGAATGA 1339
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1300 AAGTCCAAGTCTATGATCGTCTTCCCCCAGGAAAGGACTATACAAAAACTATGGGAATGA 1359
Query 1340 GTAAGTTTTGTCTGTGTCCGAGTGGTTGGGAGGTCGCTAGCCCGAGGGAGGTCGAGGCGA 1399
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1360 GTAAGTTTTGTCTGTGTCCGAGTGGTTGGGAGGTCGCTAGCCCGAGAGAGGTCGAGGCGA 1419
Query 1400 TATATGCTGGTTGTGTACCAGTGATCATATCGGATAATTATTCATTACCATTCAGTGATG 1459
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TATATGCTGGTTGTGTACCGGTGATCATATCGGATAATTATTCATTACCATTCAGTGATG 1479
Query 1460 TGCTGAATTGGGATTCCTTCTCCATACAAATCCCTGTTTCTAGGATAAAAGAGATCAAAA 1519
|||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1480 TGCTTAATTGGGATTCCTTTTCCATACAAATCCCTGTTTCTAGGATACCAGAGATCAAAA 1539
Query 1520 CCATTCTACAAAGTGTCTCTCTCGTAAGATACTTGAAGATGTATAAGAGAGTTTTAGAAG 1579
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1540 CCATTCTACAGAGTGTTTCTCTCGTAAGATACTTGAAGATGTATAAGAGAGTCTTAGAAG 1599
Query 1580 TGAAGCAGCATTTCGTGTTGAATCGTCCAGCTAAACCCTACGATGTGATGCATATGATGC 1639
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 TGAAGCAACATTTCGTGTTGAATCGTCCAGCTAAACCCTACGATGTGATGCATATGATGC 1659
Query 1640 TTCATTCGATCTGGTTAAGACGACTTAATCTTAGGCTTGGTACATAGTATACAATTTTTT 1699
|||| || ||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 1660 TTCACTCTATCTGGTTAAGACGACTTAATCTTAGGCTGGGGGCATAGTATATAATTTTTT 1719
Query 1700 -GTTATGTTGCAAATAAATATTAAGTGTCTAAGTTCATATGAGTTACTAGCTTTGTATTC 1758
||| ||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1720 TGTT--GTTACAAATAATTCTTAAGTGTCAAAGTTCATATGAGTTACTAGCTTTGTATTC 1777
Query 1759 TTTCCATAAATTTGCATAGTTCTCTCTTGTaaaaaaaTATACAACAACAAACACAATATC 1818
||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1778 TTTCCATAAATTTTCATAGTTCTTTCTTGTAAAAATATATACAACAACAAACACAATATC 1837
Query 1819 AAAGATTTCCTTATTAATAAGAGAAACAAAGCATTTGTTATTTTTGTT 1866
|||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 1838 AAAGATTTCCATATTAATAAGAGAAACAAAGCAATTGTTATTCTTGTT 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5