BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33300.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947135 jgi|Araly1|947135|scaffold_703364.1 2071 0.0
> Ahg947135 jgi|Araly1|947135|scaffold_703364.1
Length=1419
Score = 2071 bits (1121), Expect = 0.0
Identities = 1323/1418 (93%), Gaps = 23/1418 (2%)
Strand=Plus/Plus
Query 67 AAACTCTTCGCCGAAGATGACGAAGAAG-CCA--AATCTCCGATCAAAGGATTCATCTCT 123
|||||| |||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct 6 AAACTCATCGCCGGAGATGACGAAGAAGAAGATGAATCTCCGATCAAAGGATTCATCTC- 64
Query 124 CG-GAGACGATGCTGAGAAACTCTACGAGAAGAAGATTCTGGATCTGGAGTCCGTGAACG 182
|| |||||||| | || |||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 65 CGAGAGACGATTCCGATAAACTCTACGAGAAGAAGATTCGGGATCTGGAGTCCGTCAACG 124
Query 183 AAGCTCTCAAGAGTGATGTGGAAGAGCTAAGGTCAAAATTGGCTGATGTTTCGATAAGCT 242
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AAGCCCTCAAGTGTGATGTGGAAGAGCTAAGGTCAAAATTGGCTGATGTTTCGATAAGCT 184
Query 243 CATCGGTTGGTACGTTACAGTCAAGCAGAAAGTTTTCTCAAAAGTCTATTGCTAACAAAG 302
| |||||| |||||||||||||||| ||| ||||||| || |||||||||||||||||||
Sbjct 185 CTTCGGTTAGTACGTTACAGTCAAGTAGAGAGTTTTCCCAGAAGTCTATTGCTAACAAAG 244
Query 303 AGGAGGGTATGAGTTCAA-G-G--AGT--AA-----G-TCTATGTGCTCCACAAAGAAGT 350
|||||||||||||||||| | | ||| || | ||||| ||||| ||||||||||
Sbjct 245 AGGAGGGTATGAGTTCAAGGAGTAAGTCAAATTTGCGTTCTATATGCTCGACAAAGAAGT 304
Query 351 ATAAAACTGAGAGTTCTGTTAAGCAATTTGATGGTGAAGTTCAGAAATTGAAGGCGCAAA 410
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 305 ATAAAACTGAGAGTTCTGTTAAGCAGTTTGATGGCGAAGTTCAGAAATTGAAGGCCCAAA 364
Query 411 AGGTTAAGTTGCATTGCAAGATCAAGCTAGACTCTATGCAGTTCAGACTATTGAAAGCTT 470
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 365 AGGTTAAGTTGCACTGCAAGATCAAGCTAGACTCTATGCATTTCAGACTATTGAAAGCTT 424
Query 471 CACTAGAAAAGGAAGTTCTTCAGCTCAAAAAAGAGCTAAGGAAAAGTGAGTTTGAGAAAC 530
|||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 425 CACTTGAAAAAGAAGTTCTGCAGCTCAAAAAAGAGCTAAGGAAAAGCGAGTTTGAGAAAC 484
Query 531 ATGTCCTGTCAGCTCTGAACAATCGCCAGAAGCTGATTTTGCAGCTGAAGAATACACAAG 590
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 ATGTCCTGTCAGCTTTGAACAATCGCCAGAAGCTGATTTTGCAGCTGAAGAATACACAAG 544
Query 591 CTTTGACAGCCCTGAAGCGTCTAAAAATGCTGCTTCAATCTAAAAAGATTTCTTCCAACA 650
|||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 545 CTTTGACAGCAATGAAGCGCCTAAAAATGCTGCTTCAGTCTAAAAAGATTTCTTCCAATA 604
Query 651 AAAAGAAAGGCCCATCAAAAGGAACAAGCTCCGAGATTCAGGAGTCTAGCAATGAATCAG 710
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 605 AAAATAAAGGCCCATCAAAAGGAACAAGCTCCGGGATTCAGGAGTCTAGCAATGAATCAG 664
Query 711 GCCTACTAATGAAACTGAATAAAATTCATTCTGATTACGAACGCCAAATGAAAGAAATGG 770
| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 665 GGCTACTAATGAAGTTGAATAAGATTCATTCTGATTACGAACGCCAAATGAAAGAAATGG 724
Query 771 CTGAAGAGATCAAAAGGTTCAGCTTAGAGGCAGGTTTGTTGAAGGCAGAATTTGAGGGAG 830
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 725 CTGAAGAGATCAAAAGGTTCAGCTTAGAGGCAGGTGTGTTGAAGGCAGAATTCGAGGGAG 784
Query 831 AGCAAAGCTCATGTTCTGCGTCTTGTGACAACCAAATCAACCACACTCCAATGGACTCAG 890
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 785 ATCAAAGCTCATGCTCTGCGTCTTGTGACAACCAAATCAACCACACTCCAATAGACTCAG 844
Query 891 AACTAAAGGAACTCAAAGAGGAATTTAACAAACTGAGTACTCTTGTCAGCCAGATGGAAA 950
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 845 AACTAAAGGAACTCAAAGAGGAATTTAACAAACTGAGTACTCTGGTCAGCCAGATGGAAA 904
Query 951 TGACCAAATCACAATTCAGTGAAACTGATAAAGTTCAGAGCGAACCAG-TGGAACGCTCT 1009
|||||||||| |||||||||||||| |||||||||||| ||||||||| | ||||||||
Sbjct 905 TGACCAAATCCCAATTCAGTGAAACAGATAAAGTTCAGGGCGAACCAGCT-GAACGCTCC 963
Query 1010 ATCACCAGCAAGAATATCGACGATGAATCAAACTCGGAGCCATTTCAACCGGAAACTTCT 1069
|| ||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||
Sbjct 964 ATTACCAGCAAGAATATCGACGATCAATCAACCTCGGAGCCATCTCAACTGGAAACTTCT 1023
Query 1070 GAGGAAACACTTTGCAAAAAGGAACAGAGCAAAGCAGAAGTGTGTTGCTCTTGCACTAAA 1129
|||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1024 GAGGAAACTCTTTGCAAAAAGGAAGAGAACAAAGCAGAAGTGTGTTGCTCTTGCACTAAA 1083
Query 1130 AAATCTTTGTGCAAGACCAAAAGTTGCAAATGCAAGGCAAATGGAAGTGGATGTGGGGAC 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 AAATCTTTGTGCAAGACCAAAAGTTGCAAATGCAAGGCAAATGGAAGTGGATGTGGGGAC 1143
Query 1190 TCTTGTGGCTGCTTAGCTTCCAAATGTAGCAACAGAGACGAAAGTGCGAAACCCGACAAA 1249
|| ||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 1144 TCCTGTGGCTGCTTAGCTTCCAAATGTAGCAACAGAGAAGAAACTGTAAAACCCGACAAA 1203
Query 1250 CCAATGGAACCAATAGATGTTAAGAAGCCTGCTGGAATTAGCCATGACGACAAAGGCGCA 1309
|||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 1204 CCAATGGAACCACTAGATGGTAAGAAGCCTGCTGGAATTAGCCCTGACAACAAAGGCGCA 1263
Query 1310 AATAAACAACCATTACGTGACATAGGGAATATACAAGAAGCTGTAAAAGTTGGTAAGTTG 1369
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AACAAACAACCATTACGTGACATAGGGAATATACAAGAAGCTGTAAAAGTTGGTAAGTTG 1323
Query 1370 AGGAAAGTGCAGAAACGGGTTGCTAAGAAATAATGAAAATTGATAAAAGGATATGAAAGT 1429
|||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1324 AGGAAAGTGCGGAAACGAGTTGCTAAGAAATAATGAAAAT-GATAAAAGGATATGAATGT 1382
Query 1430 AAACAGAGAAACACTT-TAAGAAGCTTAAACG-TTTTT 1465
|||||||||||| ||| || |||||||||||| |||||
Sbjct 1383 AAACAGAGAAACTCTTCTA-GAAGCTTAAACGGTTTTT 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5