BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33320.1
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493573 jgi|Araly1|493573|fgenesh2_kg.7__3006__AT5G33320.1 2527 0.0
> Ahg493573 jgi|Araly1|493573|fgenesh2_kg.7__3006__AT5G33320.1
Length=1610
Score = 2527 bits (1368), Expect = 0.0
Identities = 1517/1588 (96%), Gaps = 14/1588 (1%)
Strand=Plus/Plus
Query 85 CACCAACTTCTGATTCCAGATCTCAACGATGCAAAGCTCCGCCGTATTCTCCCTCTCTCC 144
|||||||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 36 CACCAACTGCTGATT-CAGATCTCCACGATGCAAAGCTCCGCCGTATTTTCCCTCTCTCC 94
Query 145 GTCGCTTCCTCTCCTAAAACCACGTCGGCTCTCTCTCCGCCACCATCCCATAACCACCGC 204
|||||| ||||||||||||||||| ||||||||||||||||||||| || |||||| |
Sbjct 95 GTCGCTCCCTCTCCTAAAACCACGGCGGCTCTCTCTCCGCCACCATTCCTTAACCA---C 151
Query 205 CGCTTCTTCAAGCGATCTAAACGTTTCTCCAAATGTTGTCTCTATTCCTTCTTTATCTCG 264
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 152 CG---CTTCAAGCGATCTAAACATTTCTCCAAATGTTGTCTCTATTCCTTCTTTATCTCG 208
Query 265 TCGATCTTGGCGTCTCGCTTCGTCTGATTCGCCTCTCCGTGCTTGGTCCGGTGTTCCTTC 324
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 209 TCGATCTTGGCGTCTCGCTTCATCTGATTCGCCTCTCCGAGCTTGGTCCGGTGTTCCTTC 268
Query 325 TCCGATCTCTCACTCCT-TAGACACGAATCGTTTCAGAACCGCCGCTACTGCAGTTCCTG 383
| |||||||||||| || | |||||||||||||||| |||||||||||||||||||||||
Sbjct 269 TTCGATCTCTCACT-CTCTCGACACGAATCGTTTCAAAACCGCCGCTACTGCAGTTCCTG 327
Query 384 AAAGTGCTGAGGAAGGTGATAACAGTGGTAAATTGACGAAGGTTTTGGAACTTGGCTTGT 443
||||||| |||||||| |||| |||||| |||||||| ||| |||| |||||||||||||
Sbjct 328 AAAGTGCAGAGGAAGGAGATAGCAGTGGGAAATTGACCAAGATTTTAGAACTTGGCTTGT 387
Query 444 TGTTCGCTATGTGGTACCTTTTCAATATCTACTTCAACATCTACAATAAACAGGTTTTGA 503
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TGTTTGCTATGTGGTACCTTTTCAATATCTACTTCAACATCTACAATAAACAGGTTTTGA 447
Query 504 AAGCTCTACATGCTCCAATGACTGTGACTTTGGTTCAGTTTGCTGTTGGTAGTGTGCTCA 563
|||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 448 AAGCTCTACACGCTCCAATGACTGTCACTTTGGTTCAGTTTGCCGTCGGTAGTGTGCTCA 507
Query 564 TTACTATCATGTGGGTTCTTAACCTGTACAAGAGACCAAAGATCAGTGGTGCTCAGCTAG 623
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 508 TTACTATCATGTGGGTTCTTAACCTGTACAAGAGACCGAAGATCAGTGGTGCTCAGCTAG 567
Query 624 CTGCCATCTTGCCGCTTGCTGTTGTGCACACACTTGGTAATCTGTTTACGAACATGAGTC 683
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CTGCCATCTTGCCGCTTGCCGTTGTGCACACACTTGGTAATCTGTTTACGAACATGAGTC 627
Query 684 TTGGGAAAGTTTCTGTTTCCTTTACTCACACCATTAAAGCCATGGAGCCTTTCTTCTCTG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TTGGGAAAGTTTCTGTTTCCTTTACTCACACCATTAAAGCCATGGAGCCTTTCTTCTCTG 687
Query 744 TTTTATTGTCTGCTATGTTTCTCGGGGAGAAACCTACTCCATGGGTACTCGGTGCCATTG 803
| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 688 TGTTGTTGTCTGCTATGTTTCTCGGAGAGACGCCTACTCCATGGGTACTCGGTGCCATTG 747
Query 804 TACCAATTGTTGGTGGAGTTGCACTTGCTTCAATTTCGGAGGTCTCATTCAACTGGGCTG 863
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 748 TACCAATTGTTGGTGGAGTTGCACTTGCTTCAATTTCGGAGGTCTCATTTAACTGGGCTG 807
Query 864 GATTTTCGAGTGCAATGGCATCAAACTTGACTAACCAATCCCGTAATGTGCTGAGTAAGA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GATTTTCGAGTGCAATGGCATCAAACTTGACTAACCAATCCCGTAATGTGCTGAGTAAGA 867
Query 924 AAGTCATGGTTAAGAAAGATGATTCTCTTGACAACATCACTCTCTTCTCAATTATAACAT 983
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 868 AAGTCATGGTTAAGAAAGATGATTCTCTGGACAACATCACTCTCTTCTCAATTATAACAT 927
Query 984 TGATGTCTCTCGTTCTGATGGCTCCTGTGACTTTCTTTACGGAAGGCATCAAGTTCACTC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 TGATGTCTCTCGTTCTGATGGCTCCTGTGACTTTCTTTACGGAAGGCATCAAGTTCACTC 987
Query 1044 CTTCATACATTCAATCAGCTGGTGTGAATGTTAAACAAATATATACAAAGTCTCTTATCG 1103
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 988 CTTCATACATTCAATCTGCTGGTGTGAATGTTCAACAAATATATACAAAGTCTCTTATTG 1047
Query 1104 CTGCACTCTGCTTCCACGCATACCAGCAGGTGTCGTACATGATATTGGCGAGAGTATCAC 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CTGCACTCTGCTTCCACGCATACCAGCAGGTGTCGTACATGATATTGGCGAGAGTATCAC 1107
Query 1164 CGGTTACACATTCTGTCGGAAACTGTGTGAAACGTGTTGTGGTTATTGTGAGCTCTGTCA 1223
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 CGGTTACACATTCTGTTGGAAACTGTGTGAAACGTGTTGTGGTTATTGTGAGCTCTGTCA 1167
Query 1224 TCTTCTTCAAGACACCCGTCTCGCCTGTTAATGCTTTCGGAACTGGAATCGCCCTTGCGG 1283
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1168 TCTTCTTCAAGACACCTGTCTCGCCTGTTAATGCTTTTGGAACTGGGATCGCCCTTGCGG 1227
Query 1284 GTGTCTTCTTATACTCCAGAGTGAAGGGTATTAAGCCAAAGCCAAAGACTGCTTAAGCAA 1343
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1228 GTGTCTTCTTATACTCCAGAGTTAAGGGTATTAAGCCAAAGCCGAAGACTGCTTAAGCAA 1287
Query 1344 ATATCGGCTAATACCTAATGTCATATCACTCCCGCGCTTTGGATTTGTATACAATTTCTC 1403
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1288 ATATCTGCTAATACCTAATGTCATATCACTCCCGCGCTTTGGATTTTTATACAATTTCTC 1347
Query 1404 GAGCTAAAGTTTTCAGATAGATGGTTTTATTCTTTTGCGGGTTTTTTCACGAAGTTTCAT 1463
||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1348 GAGCTGAAGTTTTCAGATAGATGGTTTTATTCTTTTGCGGGTTGTT-CACGAAGTTTCAT 1406
Query 1464 CATCCCTTTCTAAGCTTTTCGCTGCAGCCATCGGTTCTCTTAGAGTTTGTTATAAGTTCT 1523
||| ||||||||| |||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 1407 TATCGCTTTCTAAGTTTTTTGCTGCAGCCATGGGTTTTCTTAGAGTTTGTTATAAGTTCT 1466
Query 1524 CTTCTGTGTCTAGACAAATGCTAAACTCTTAAATTTCTTACAGTTTTTCCAAGAATAACT 1583
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1467 CTTCTGTGCCTAGACAAATGCTAAACTCTTAAATTTCTTACAGTTTT-CCAAGAATAACT 1525
Query 1584 TGTCAACACATTCTCATTACTGCTTTTAGTTTACACGTTTAAGGTTTATTAGGAGGAGCA 1643
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1526 TGTCAACACATTCTCATTGGTGCTTTTAGTTTACACGTTTAAGGTTTATTAGGAG---CA 1582
Query 1644 CGTGAATTGTTCCTTTTGCTATGGTGAT 1671
|||||||||||||||||| |||||||||
Sbjct 1583 CGTGAATTGTTCCTTTTGATATGGTGAT 1610
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 29 ACCAACCCACTCGACGGAGTCTCCAACGC 57
|||||||||||||||||||||||||||||
Sbjct 1 ACCAACCCACTCGACGGAGTCTCCAACGC 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62963174985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5