BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G33340.1 Length=1486 Score E Sequences producing significant alignments: (Bits) Value Ahg891090 jgi|Araly1|891090|Al_scaffold_0007_3076 1770 0.0 Ahg891089 jgi|Araly1|891089|Al_scaffold_0007_3075 1136 0.0 > Ahg891090 jgi|Araly1|891090|Al_scaffold_0007_3076 Length=1323 Score = 1770 bits (958), Expect = 0.0 Identities = 1213/1333 (91%), Gaps = 29/1333 (2%) Strand=Plus/Plus Query 8 ATGGCctctctattctcttcagttctcttgtctctttgtttactctcttcactttttctc 67 ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 1 ATGGCCTCTTTATTCTCTTCAGTTCTCTTGTCTCTTTGTATACTCTCTTCACCTTTTCTC 60 Query 68 tcAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCT 127 ||||| |||||||| || ||||||||||||||||||| ||||| ||||||||||||||| Sbjct 61 TCAAACGCAAACGCCAAATCAAAACTAGGCTTCACCGCCGATCTGATCCACCGTGATTCT 120 Query 128 CCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCT-ACGAAACGCGAT 186 ||||||||||| ||||||||||||| ||||||||||||||||||| | | ||||||| || Sbjct 121 CCTAAATCGCCATTCTATAACCCGACGGAAACCTCTTCCCAGCGTTTGA-GAAACGCTAT 179 Query 187 CCACCGATCCGTTAACCGTGTTTTCCATTTCACTG---------AAAAGGATAACA-C-- 234 |||||||||||||| |||||||||||||||||||| |||||||| || | Sbjct 180 CCACCGATCCGTTAGCCGTGTTTTCCATTTCACTGATATCTCTCAAAAGGAT-GCATCGG 238 Query 235 ACCAC-AACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATC-C 292 | || |||||| ||||| |||||||||||||||||||||||||| |||||| |||| | Sbjct 239 ATAACGCACCACAAATTGATCTCACCTCAAATAGCGGTGAATATCTAATGAACATATCTC 298 Query 293 ATTGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGG 352 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 299 -TTGGAACACCTCCTTTCCCGATCATGGCGATCGCTGACACCGGAAGTGATCTCCTGTGG 357 Query 353 ACGCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 412 ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 417 Query 413 ACGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAAT 472 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 418 GCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAAAT 477 Query 473 CAAGCCTCTTGTTCCACA-AATGACAACACTTGTTCTTACTCATTGTCTTACGGGGATAA 531 |||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||| Sbjct 478 CAAGCCTCTTGTTCCACAGAA-GACAACACTTGCTCTTACTCAACGTCTTACGGGGATCG 536 Query 532 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCG 591 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 537 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCACCGATACCCG 596 Query 592 CCCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTAA 651 ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 597 CCCGGTGCAGCTTAAGAATATTATTATTGGTTGTGGTCACAACAACGCTGGAACGTTTAA 656 Query 652 CAAGAAAGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAACT 711 |||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||| Sbjct 657 CAAGAAGGGCTCTGGAATCGTCGGACTAGGTGGTGGTGCGGTTTCGCTCATCACGCAACT 716 Query 712 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGGA 771 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 717 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCTGAAAATGA 776 Query 772 TCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCTC 831 || |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||| Sbjct 777 TCGAACGAGCAAAATCAACTTCGGAACCAATGCTGTTGTGTCGGGAACAGGAGTTGTCTC 836 Query 832 AACTCCTCTGATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCCAT 891 ||||||| ||||||| || |||||||||||| |||||||| |||||||||||||| || Sbjct 837 AACTCCTTTGATCGCGAA---GTCTCAAGAGACTTTCTATTATCTAACCCTAAAATCTAT 893 Query 892 TAGCGTGGGAAGCAAGCAAATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGGAAA 951 |||||||||||||||| || |||||||| | ||||||||||||| ||| |||||||||| Sbjct 894 TAGCGTGGGAAGCAAGGAAGTCCAATACCCTGGCTCAGATTCTGGAAGTGGCGAGGGAAA 953 Query 952 CATCATCATCGATTCAGGCACAACTTTAACGTTATTACCGACTGAATTTTACTCCGAGCT 1011 ||||||||| ||||| |||||||| ||||||| ||||| || ||||||||||||||||| Sbjct 954 CATCATCATTGATTCGGGCACAACCCTAACGTTGTTACCCACCGAATTTTACTCCGAGCT 1013 Query 1012 CGAGGATGCGGTTGCATCCTCTATCGATGCTGAGAAGAAGCAAGATCCACAAAGCGGTTT 1071 |||||||||||| || ||||| ||||||||||||||||| ||||||||||||| |||||| Sbjct 1014 CGAGGATGCGGTGGCTTCCTCAATCGATGCTGAGAAGAAACAAGATCCACAAACCGGTTT 1073 Query 1072 GAGTCTATGTTACAGTGCAACCGGAGATCTAAAAGTTCCAGTCATTACTATGCATTTTGA 1131 |||||| ||||| ||||||||||| ||||| |||||||||| ||||||||||||||| || Sbjct 1074 GAGTCTGTGTTATAGTGCAACCGGGGATCTGAAAGTTCCAGCCATTACTATGCATTTCGA 1133 Query 1132 TGGAGCCGATGTGAAGCTTG--ACTCCTCCAA-TGCCTTTGTACAAGTCTCGGAGGATTT 1188 |||||| |||||||| | || || ||||||| || |||||||||| ||||||||||||| Sbjct 1134 TGGAGCAGATGTGAATC-TGAAAC-CCTCCAATTG-CTTTGTACAAATCTCGGAGGATTT 1190 Query 1189 GGTTTGCTTTGCCTTCCGCGGAAGCCCGAGTTTCTCCATATACGGTAATGTGGCGCAGAT 1248 ||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || || Sbjct 1191 GGTTTGCTTTGCCTTCCGCGGGAGCCCGAGTTTCTCCATATACGGGAACGTGGCACAAAT 1250 Query 1249 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1251 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1310 Query 1309 TGCAAAGATGTAG 1321 ||||||||||||| Sbjct 1311 TGCAAAGATGTAG 1323 > Ahg891089 jgi|Araly1|891089|Al_scaffold_0007_3075 Length=1308 Score = 1136 bits (615), Expect = 0.0 Identities = 1115/1347 (83%), Gaps = 72/1347 (5%) Strand=Plus/Plus Query 8 ATGGCctctctattctcttcagttctcttgtctctttgtttactctcttcactttttctc 67 |||| |||||||||| ||||||||||||||||||| |||||| ||||||||| | ||||| Sbjct 1 ATGGTCTCTCTATTCACTTCAGTTCTCTTGTCTCTATGTTTATTCTCTTCACATATTCTC 60 Query 68 tcAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCT 127 ||||| | |||||| || |||||||||||||||||| | ||||| ||||||||||||||| Sbjct 61 TCAAACGTAAACGCCAAACCAAAACTAGGCTTCACCACCGATCTGATCCACCGTGATTCT 120 Query 128 CCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCTACGAAACGCGATC 187 ||||||||||| |||||||||||| ||||||| ||||||||||| || ||||||| ||| Sbjct 121 CCTAAATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAGCGTATAAGAAACGCTATC 180 Query 188 CACCGATCCGTTAACCGTGTTTTCCATTTCACTGA--------AAA-GGATAACA-CAC- 236 |||||||| |||||||||||| |||||||||||| ||| |||| || ||| Sbjct 181 CACCGATCATTTAACCGTGTTTCCCATTTCACTGATCTCTCTGAAATGGAT-GCATCACT 239 Query 237 -CAC-AACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATCCAT 294 || |||||| | ||| ||||| || | |||||||||||||||||||| ||||| | Sbjct 240 TAACTCACCACAAACTGATATCACCCCATGTGGCGGTGAATATCTCATGAACCTATCCCT 299 Query 295 TGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGGAC 354 |||||||||||||| |||||||||||| |||| ||||| |||||| ||||| ||||||| Sbjct 300 TGGAACACCTCCTTCCCCGATCATGGCGGTCGCTGACACTGGAAGTAATCTCATCTGGAC 359 Query 355 GCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAAAC 414 ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| | Sbjct 360 GCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAAGC 419 Query 415 GTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAATCA 474 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 GTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAAATCA 479 Query 475 AGCCTCTTGTTCCACA-AATGACAACACTTGTTCTTACTCAT-TGTCTTACGGGGATAAC 532 |||||||||||||||| || || || ||||| |||||| | | ||||||||| |||| | Sbjct 480 AGCCTCTTGTTCCACAGAA-GATAAAACTTGCTCTTAC-CTTGTGTCTTACGCGGATGGC 537 Query 533 TCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCGC 592 |||||||||| |||||| |||| |||||||||||||| |||||||||| ||||| |||| Sbjct 538 TCATACACAATGGGTAAGTTCGCTGTGGATACCTTAACACTCGGCTCCACCGATAACCGC 597 Query 593 CCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTA-A 651 || ||||||||||||||||||| |||||||||||||| |||||||||| ||| |||| | Sbjct 598 CCGGTGCAGCTTAAGAATATTATCATCGGTTGTGGTCAGAACAACGCTGTAACATTTAGA 657 Query 652 CAAGAA-AGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAAC 710 || || || ||||||| |||| ||||| ||||||||| | |||||||| || ||||||| Sbjct 658 -AACAAGAG-CTCTGGAGTCGTTGGACTTGGTGGTGGTGCAGTTTCGCTCATTAAGCAAC 715 Query 711 TTGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGG 770 | || ||||||||||||||||||||||||||||||||||| ||| || || | Sbjct 716 TCGGAGACTCCATCGACGGTAAATTCTCATACTGCTTGGTACCTG-AA-----AAT--G- 766 Query 771 ATCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCT 830 |||||||||| || |||||||||||||| |||||| | ||||||||| | ||| ||||| Sbjct 767 ATCAAACGAGCAAGATCAACTTCGGAACTAATGCCGTTGTGTCGGGACCGGGAACTGTCT 826 Query 831 CAACTCCTCT-GATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCC 889 ||||||| || | ||| ||| |||| ||| ||||||||||| |||||||||||||| Sbjct 827 CAACTCC-CTTGGTCGTGAAG---TCTCGAGATACCTTCTATTATCTAACCCTAAAATCT 882 Query 890 ATTAGCGTGGGAAGCAAGCAA-ATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGG 948 |||||||||||||||||| || || ||| || | | |||| || ||| | | |||| Sbjct 883 ATTAGCGTGGGAAGCAAG-AATATGCAA-AC-C---C-CAGACTC--AAAT-ATCAAGGG 932 Query 949 AAACATCATCATCGATTCAGGCACAACTTTAACG-TTATTACCGACTGAA-T-TT-TACT 1004 |||||| |||||||||| ||||||||| ||||| || ||||| | |||| | || || | Sbjct 933 AAACATGGTCATCGATTCGGGCACAACTCTAACGCTT-TTACC-AGTGAAATATTATA-T 989 Query 1005 CCGAGCTCGAGGATGCGGTTGCATCCTCTA-TCGATGCTGAGAAGAAGCAAGATCCACA- 1062 | ||| | ||| |||| ||||| |||| || || |||| || ||| | ||||| | | Sbjct 990 C-GAGATTGAGAATGCTGTTGCGTCCT-TAATCAATGCAGATAAGTCGAAAGATGAA-AG 1046 Query 1063 AAGCGGTTTGAGTCTATGTTACAGTGCAACCGGAGATCTAAA-AGTTCCAGTCATTACTA 1121 || ||||| |||||| ||||||| |||||||| |||||| || | | ||||||||||||| Sbjct 1047 AATCGGTTCGAGTCTGTGTTACAATGCAACCGCAGATCTGAATA-TCCCAGTCATTACTA 1105 Query 1122 TGCATTTTGATGGAGCCGATGTGAAGCTTGACTCC-TCCAATGCCTTTGTACAA-GTCTC 1179 ||||||| || ||||| |||||||||||| | ||| | ||| | ||| | ||| ||| | Sbjct 1106 TGCATTTCGAAGGAGCAGATGTGAAGCTTTA-TCCCTATAATTCATTTTT-CAAAGTCAC 1163 Query 1180 GGAGGATTTGGTTTGCTTTGCCTTCCGCG-GAAGCCCG-A--GTT-TCTCCATATACGGT 1234 || |||||||||||||| ||||| || || | | | | |||||||| Sbjct 1164 AGAAGATTTGGTTTGCTTGGCCTTTGGCATGA-GTTTTTATAGGAATGGG-ATATACGGG 1221 Query 1235 AATGTGGCGCAGATGAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTT 1294 ||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1222 AATGTGGCGCAGAAGAACTTTCTTGTTGGATACGACACTGCTTCCAAAACAATGTCATTT 1281 Query 1295 AAGCCAACAGATTGTGCAAAGATGTAG 1321 || ||||| |||||||||||||||||| Sbjct 1282 AAACCAACGGATTGTGCAAAGATGTAG 1308 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55611757700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5