BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33340.1
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891090 jgi|Araly1|891090|Al_scaffold_0007_3076 1770 0.0
Ahg891089 jgi|Araly1|891089|Al_scaffold_0007_3075 1136 0.0
> Ahg891090 jgi|Araly1|891090|Al_scaffold_0007_3076
Length=1323
Score = 1770 bits (958), Expect = 0.0
Identities = 1213/1333 (91%), Gaps = 29/1333 (2%)
Strand=Plus/Plus
Query 8 ATGGCctctctattctcttcagttctcttgtctctttgtttactctcttcactttttctc 67
||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1 ATGGCCTCTTTATTCTCTTCAGTTCTCTTGTCTCTTTGTATACTCTCTTCACCTTTTCTC 60
Query 68 tcAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCT 127
||||| |||||||| || ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 TCAAACGCAAACGCCAAATCAAAACTAGGCTTCACCGCCGATCTGATCCACCGTGATTCT 120
Query 128 CCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCT-ACGAAACGCGAT 186
||||||||||| ||||||||||||| ||||||||||||||||||| | | ||||||| ||
Sbjct 121 CCTAAATCGCCATTCTATAACCCGACGGAAACCTCTTCCCAGCGTTTGA-GAAACGCTAT 179
Query 187 CCACCGATCCGTTAACCGTGTTTTCCATTTCACTG---------AAAAGGATAACA-C-- 234
|||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 180 CCACCGATCCGTTAGCCGTGTTTTCCATTTCACTGATATCTCTCAAAAGGAT-GCATCGG 238
Query 235 ACCAC-AACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATC-C 292
| || |||||| ||||| |||||||||||||||||||||||||| |||||| |||| |
Sbjct 239 ATAACGCACCACAAATTGATCTCACCTCAAATAGCGGTGAATATCTAATGAACATATCTC 298
Query 293 ATTGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGG 352
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 299 -TTGGAACACCTCCTTTCCCGATCATGGCGATCGCTGACACCGGAAGTGATCTCCTGTGG 357
Query 353 ACGCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 412
||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAA 417
Query 413 ACGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAAT 472
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 GCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAAAT 477
Query 473 CAAGCCTCTTGTTCCACA-AATGACAACACTTGTTCTTACTCATTGTCTTACGGGGATAA 531
|||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||
Sbjct 478 CAAGCCTCTTGTTCCACAGAA-GACAACACTTGCTCTTACTCAACGTCTTACGGGGATCG 536
Query 532 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCG 591
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 537 CTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCACCGATACCCG 596
Query 592 CCCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTAA 651
||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 CCCGGTGCAGCTTAAGAATATTATTATTGGTTGTGGTCACAACAACGCTGGAACGTTTAA 656
Query 652 CAAGAAAGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAACT 711
|||||| |||||||||||||||||||||||||||||| |||||||||| |||| ||||||
Sbjct 657 CAAGAAGGGCTCTGGAATCGTCGGACTAGGTGGTGGTGCGGTTTCGCTCATCACGCAACT 716
Query 712 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGGA 771
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 717 TGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCTGAAAATGA 776
Query 772 TCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCTC 831
|| |||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 777 TCGAACGAGCAAAATCAACTTCGGAACCAATGCTGTTGTGTCGGGAACAGGAGTTGTCTC 836
Query 832 AACTCCTCTGATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCCAT 891
||||||| ||||||| || |||||||||||| |||||||| |||||||||||||| ||
Sbjct 837 AACTCCTTTGATCGCGAA---GTCTCAAGAGACTTTCTATTATCTAACCCTAAAATCTAT 893
Query 892 TAGCGTGGGAAGCAAGCAAATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGGAAA 951
|||||||||||||||| || |||||||| | ||||||||||||| ||| ||||||||||
Sbjct 894 TAGCGTGGGAAGCAAGGAAGTCCAATACCCTGGCTCAGATTCTGGAAGTGGCGAGGGAAA 953
Query 952 CATCATCATCGATTCAGGCACAACTTTAACGTTATTACCGACTGAATTTTACTCCGAGCT 1011
||||||||| ||||| |||||||| ||||||| ||||| || |||||||||||||||||
Sbjct 954 CATCATCATTGATTCGGGCACAACCCTAACGTTGTTACCCACCGAATTTTACTCCGAGCT 1013
Query 1012 CGAGGATGCGGTTGCATCCTCTATCGATGCTGAGAAGAAGCAAGATCCACAAAGCGGTTT 1071
|||||||||||| || ||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 1014 CGAGGATGCGGTGGCTTCCTCAATCGATGCTGAGAAGAAACAAGATCCACAAACCGGTTT 1073
Query 1072 GAGTCTATGTTACAGTGCAACCGGAGATCTAAAAGTTCCAGTCATTACTATGCATTTTGA 1131
|||||| ||||| ||||||||||| ||||| |||||||||| ||||||||||||||| ||
Sbjct 1074 GAGTCTGTGTTATAGTGCAACCGGGGATCTGAAAGTTCCAGCCATTACTATGCATTTCGA 1133
Query 1132 TGGAGCCGATGTGAAGCTTG--ACTCCTCCAA-TGCCTTTGTACAAGTCTCGGAGGATTT 1188
|||||| |||||||| | || || ||||||| || |||||||||| |||||||||||||
Sbjct 1134 TGGAGCAGATGTGAATC-TGAAAC-CCTCCAATTG-CTTTGTACAAATCTCGGAGGATTT 1190
Query 1189 GGTTTGCTTTGCCTTCCGCGGAAGCCCGAGTTTCTCCATATACGGTAATGTGGCGCAGAT 1248
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||
Sbjct 1191 GGTTTGCTTTGCCTTCCGCGGGAGCCCGAGTTTCTCCATATACGGGAACGTGGCACAAAT 1250
Query 1249 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTTAAGCCAACAGATTG 1310
Query 1309 TGCAAAGATGTAG 1321
|||||||||||||
Sbjct 1311 TGCAAAGATGTAG 1323
> Ahg891089 jgi|Araly1|891089|Al_scaffold_0007_3075
Length=1308
Score = 1136 bits (615), Expect = 0.0
Identities = 1115/1347 (83%), Gaps = 72/1347 (5%)
Strand=Plus/Plus
Query 8 ATGGCctctctattctcttcagttctcttgtctctttgtttactctcttcactttttctc 67
|||| |||||||||| ||||||||||||||||||| |||||| ||||||||| | |||||
Sbjct 1 ATGGTCTCTCTATTCACTTCAGTTCTCTTGTCTCTATGTTTATTCTCTTCACATATTCTC 60
Query 68 tcAAATGCAAACGCTAAGCCAAAACTAGGCTTCACCGCGGATCTAATCCACCGTGATTCT 127
||||| | |||||| || |||||||||||||||||| | ||||| |||||||||||||||
Sbjct 61 TCAAACGTAAACGCCAAACCAAAACTAGGCTTCACCACCGATCTGATCCACCGTGATTCT 120
Query 128 CCTAAATCGCCGTTCTATAACCCGATGGAAACCTCTTCCCAGCGTCTACGAAACGCGATC 187
||||||||||| |||||||||||| ||||||| ||||||||||| || ||||||| |||
Sbjct 121 CCTAAATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAGCGTATAAGAAACGCTATC 180
Query 188 CACCGATCCGTTAACCGTGTTTTCCATTTCACTGA--------AAA-GGATAACA-CAC- 236
|||||||| |||||||||||| |||||||||||| ||| |||| || |||
Sbjct 181 CACCGATCATTTAACCGTGTTTCCCATTTCACTGATCTCTCTGAAATGGAT-GCATCACT 239
Query 237 -CAC-AACCACAGATTGACCTCACCTCAAATAGCGGTGAATATCTCATGAACGTATCCAT 294
|| |||||| | ||| ||||| || | |||||||||||||||||||| ||||| |
Sbjct 240 TAACTCACCACAAACTGATATCACCCCATGTGGCGGTGAATATCTCATGAACCTATCCCT 299
Query 295 TGGAACACCTCCTTTCCCGATCATGGCCATCGCCGACACCGGAAGTGATCTCCTCTGGAC 354
|||||||||||||| |||||||||||| |||| ||||| |||||| ||||| |||||||
Sbjct 300 TGGAACACCTCCTTCCCCGATCATGGCGGTCGCTGACACTGGAAGTAATCTCATCTGGAC 359
Query 355 GCAGTGCGCACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAAAC 414
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 GCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAAAGC 419
Query 415 GTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGTCAATGTACTGCCCTAGAAAATCA 474
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAAATCA 479
Query 475 AGCCTCTTGTTCCACA-AATGACAACACTTGTTCTTACTCAT-TGTCTTACGGGGATAAC 532
|||||||||||||||| || || || ||||| |||||| | | ||||||||| |||| |
Sbjct 480 AGCCTCTTGTTCCACAGAA-GATAAAACTTGCTCTTAC-CTTGTGTCTTACGCGGATGGC 537
Query 533 TCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCAGCGATACCCGC 592
|||||||||| |||||| |||| |||||||||||||| |||||||||| ||||| ||||
Sbjct 538 TCATACACAATGGGTAAGTTCGCTGTGGATACCTTAACACTCGGCTCCACCGATAACCGC 597
Query 593 CCTATGCAGCTTAAGAATATTATTATCGGTTGTGGTCACAACAACGCTGGAACGTTTA-A 651
|| ||||||||||||||||||| |||||||||||||| |||||||||| ||| |||| |
Sbjct 598 CCGGTGCAGCTTAAGAATATTATCATCGGTTGTGGTCAGAACAACGCTGTAACATTTAGA 657
Query 652 CAAGAA-AGGCTCTGGAATCGTCGGACTAGGTGGTGGTCCGGTTTCGCTTATCAAGCAAC 710
|| || || ||||||| |||| ||||| ||||||||| | |||||||| || |||||||
Sbjct 658 -AACAAGAG-CTCTGGAGTCGTTGGACTTGGTGGTGGTGCAGTTTCGCTCATTAAGCAAC 715
Query 711 TTGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCCAAAAAGG 770
| || ||||||||||||||||||||||||||||||||||| ||| || || |
Sbjct 716 TCGGAGACTCCATCGACGGTAAATTCTCATACTGCTTGGTACCTG-AA-----AAT--G- 766
Query 771 ATCAAACGAGTAAAATCAACTTCGGAACCAATGCCATCGTGTCGGGATCAGGAGTTGTCT 830
|||||||||| || |||||||||||||| |||||| | ||||||||| | ||| |||||
Sbjct 767 ATCAAACGAGCAAGATCAACTTCGGAACTAATGCCGTTGTGTCGGGACCGGGAACTGTCT 826
Query 831 CAACTCCTCT-GATCGCAAAGGCGTCTCAAGAGACCTTCTATTACCTAACCCTAAAATCC 889
||||||| || | ||| ||| |||| ||| ||||||||||| ||||||||||||||
Sbjct 827 CAACTCC-CTTGGTCGTGAAG---TCTCGAGATACCTTCTATTATCTAACCCTAAAATCT 882
Query 890 ATTAGCGTGGGAAGCAAGCAA-ATCCAATACTCAGGCTCAGATTCTGAAAGCAGCGAGGG 948
|||||||||||||||||| || || ||| || | | |||| || ||| | | ||||
Sbjct 883 ATTAGCGTGGGAAGCAAG-AATATGCAA-AC-C---C-CAGACTC--AAAT-ATCAAGGG 932
Query 949 AAACATCATCATCGATTCAGGCACAACTTTAACG-TTATTACCGACTGAA-T-TT-TACT 1004
|||||| |||||||||| ||||||||| ||||| || ||||| | |||| | || || |
Sbjct 933 AAACATGGTCATCGATTCGGGCACAACTCTAACGCTT-TTACC-AGTGAAATATTATA-T 989
Query 1005 CCGAGCTCGAGGATGCGGTTGCATCCTCTA-TCGATGCTGAGAAGAAGCAAGATCCACA- 1062
| ||| | ||| |||| ||||| |||| || || |||| || ||| | ||||| | |
Sbjct 990 C-GAGATTGAGAATGCTGTTGCGTCCT-TAATCAATGCAGATAAGTCGAAAGATGAA-AG 1046
Query 1063 AAGCGGTTTGAGTCTATGTTACAGTGCAACCGGAGATCTAAA-AGTTCCAGTCATTACTA 1121
|| ||||| |||||| ||||||| |||||||| |||||| || | | |||||||||||||
Sbjct 1047 AATCGGTTCGAGTCTGTGTTACAATGCAACCGCAGATCTGAATA-TCCCAGTCATTACTA 1105
Query 1122 TGCATTTTGATGGAGCCGATGTGAAGCTTGACTCC-TCCAATGCCTTTGTACAA-GTCTC 1179
||||||| || ||||| |||||||||||| | ||| | ||| | ||| | ||| ||| |
Sbjct 1106 TGCATTTCGAAGGAGCAGATGTGAAGCTTTA-TCCCTATAATTCATTTTT-CAAAGTCAC 1163
Query 1180 GGAGGATTTGGTTTGCTTTGCCTTCCGCG-GAAGCCCG-A--GTT-TCTCCATATACGGT 1234
|| |||||||||||||| ||||| || || | | | | ||||||||
Sbjct 1164 AGAAGATTTGGTTTGCTTGGCCTTTGGCATGA-GTTTTTATAGGAATGGG-ATATACGGG 1221
Query 1235 AATGTGGCGCAGATGAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTGTCATTT 1294
||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1222 AATGTGGCGCAGAAGAACTTTCTTGTTGGATACGACACTGCTTCCAAAACAATGTCATTT 1281
Query 1295 AAGCCAACAGATTGTGCAAAGATGTAG 1321
|| ||||| ||||||||||||||||||
Sbjct 1282 AAACCAACGGATTGTGCAAAGATGTAG 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5