BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33350.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891089 jgi|Araly1|891089|Al_scaffold_0007_3075 1688 0.0
Ahg891090 jgi|Araly1|891090|Al_scaffold_0007_3076 1157 0.0
> Ahg891089 jgi|Araly1|891089|Al_scaffold_0007_3075
Length=1308
Score = 1688 bits (914), Expect = 0.0
Identities = 1188/1319 (90%), Gaps = 24/1319 (2%)
Strand=Plus/Plus
Query 3 CTCTCTATTCACTTCACTTCTCTTGTCTCTATGTTTATTCTCTTCTCCTATTTTCTCAAA 62
|||||||||||||||| |||||||||||||||||||||||||||| | |||| |||||||
Sbjct 6 CTCTCTATTCACTTCAGTTCTCTTGTCTCTATGTTTATTCTCTTCACATATTCTCTCAAA 65
Query 63 CGCAAACGCCAAACCAAAACTAGGCTTCACCGCGGATCTGATCCACCGCGATTCTCCTAA 122
|| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 66 CGTAAACGCCAAACCAAAACTAGGCTTCACCACCGATCTGATCCACCGTGATTCTCCTAA 125
Query 123 ATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAACGTATGAGAAACGCTATCCACCG 182
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 126 ATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAGCGTATAAGAAACGCTATCCACCG 185
Query 183 ATCCTTTAACCGTGCTTCCCATTTCAGTAATCTTTTTGAAAAGGATGCATCACTTAACGC 242
||| |||||||||| ||||||||||| | |||| | ||||| |||||||||||||||| |
Sbjct 186 ATCATTTAACCGTGTTTCCCATTTCACTGATCTCTCTGAAATGGATGCATCACTTAACTC 245
Query 243 ACCACAAACTGATATCACCAAATATTTCGGT-ATATATCTTATGAACGTATCCCTTGGGA 301
||||||||||||||||||| || | |||| | |||||| |||||| |||||||| |||
Sbjct 246 ACCACAAACTGATATCACCCCATGTGGCGGTGA-ATATCTCATGAACCTATCCCTT-GGA 303
Query 302 GTTGGGACACCTCCCGT-CCCAATCATGGCGGCCGCTGACACCGGAAGTGATCTCATCTG 360
|||||| || | ||| |||||||||| ||||||||| |||||| ||||||||||
Sbjct 304 ------ACACCT-CCTTCCCCGATCATGGCGGTCGCTGACACTGGAAGTAATCTCATCTG 356
Query 361 GACGCAGTGCAAACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAA 420
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACCCTAA 416
Query 421 AGCGTCTTCCACATACAAAGACGTTTCTTGCCCCTCAAGCCAATGTAGGGCTCTA-AAAG 479
||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||
Sbjct 417 AGCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAGAAA- 475
Query 480 ATGATGCTTCTTGTTCCAAAAAAGACAACACTTGCTCTTAC-TCAATGAATTACGGGGAT 538
|| | || |||||||||| | |||| || |||||||||||| | || ||||| ||||
Sbjct 476 ATCAAGCCTCTTGTTCCACAGAAGATAAAACTTGCTCTTACCTTG-TGTCTTACGCGGAT 534
Query 539 AACTCATACTCACGGGGTAATGT-CGCTGTGGATACCTTAACGCTCGGCTCCACCGATAA 597
||||||| || |||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 535 GGCTCATACACAATGGGTAA-GTTCGCTGTGGATACCTTAACACTCGGCTCCACCGATAA 593
Query 598 CCGTCCGGTGCAGGTTAAGAATATTATCATCGGTTGTGGTCACGAA-AACGCTGTAACAT 656
||| ||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 594 CCGCCCGGTGCAGCTTAAGAATATTATCATCGGTTGTGGTCA-GAACAACGCTGTAACAT 652
Query 657 TTAGAAACAAGAGCTCTGGAATCGTTGGACTTGGTGGTGGTGCGGTTTCGCTCGTTAAAC 716
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |
Sbjct 653 TTAGAAACAAGAGCTCTGGAGTCGTTGGACTTGGTGGTGGTGCAGTTTCGCTCATTAAGC 712
Query 717 AACTCGGAGACTCCATCGAAGGTAAATTCTCATACTGCTTGGTACCTGAAAATGATCAAA 776
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 AACTCGGAGACTCCATCGACGGTAAATTCTCATACTGCTTGGTACCTGAAAATGATCAAA 772
Query 777 CGAGCAAGATTAGTTTCGGAACCAATGCGGTTGTGTCGGGACCGGGAACTGTCTCAACTC 836
|||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 773 CGAGCAAGATCAACTTCGGAACTAATGCCGTTGTGTCGGGACCGGGAACTGTCTCAACTC 832
Query 837 CTTTGGTCGTGAAGTCTCCAGAGACCTTCTATTTTCTAACCCTAAAATCTATTACCGTGG 896
| |||||||||||||||| ||| |||||||||| |||||||||||||||||||| |||||
Sbjct 833 CCTTGGTCGTGAAGTCTCGAGATACCTTCTATTATCTAACCCTAAAATCTATTAGCGTGG 892
Query 897 GAAGCAAGAATATGCCAACCCCAGGCTCTGATATCAAGGGAAACATGGTCATCGATTCGG 956
||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 893 GAAGCAAGAATATGCAAACCCCAGACTCAAATATCAAGGGAAACATGGTCATCGATTCGG 952
Query 957 GCACAACTCTAACTCTGTTACCTGGGAAATATTATTTCCAGATTGAGAGTGCTGTTGCGT 1016
||||||||||||| || ||||| | |||||||||| || ||||||||| |||||||||||
Sbjct 953 GCACAACTCTAACGCTTTTACCAGTGAAATATTATATCGAGATTGAGAATGCTGTTGCGT 1012
Query 1017 CTTTAATCGATGCAGAGAGGTCGAAAGATGAAAGAATCGGTTCGAGTCTTTGATACAATG 1076
| |||||| ||||||| | |||||||||||||||||||||||||||||| || |||||||
Sbjct 1013 CCTTAATCAATGCAGATAAGTCGAAAGATGAAAGAATCGGTTCGAGTCTGTGTTACAATG 1072
Query 1077 CAACCGCAGATCTGAA-AGTCCCAGTCATTACTATGCATTTCGATGGAGCAGATGTGAAG 1135
|||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1073 CAACCGCAGATCTGAATA-TCCCAGTCATTACTATGCATTTCGAAGGAGCAGATGTGAAG 1131
Query 1136 CTTGATTCCTATAATTCATTTTTTAAAGTCTCAGATGATTTGGTTTGCTTTGCCTTTGGC 1195
||| || |||||||||||||||| |||||| |||| |||||||||||||| |||||||||
Sbjct 1132 CTTTATCCCTATAATTCATTTTTCAAAGTCACAGAAGATTTGGTTTGCTTGGCCTTTGGC 1191
Query 1196 TTGAACTTGATTACGAGGGATGGGATATACGGGAATGTGGCGCAGAAGAACTTTCTTGTT 1255
||| || ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 ATGAGTTT--TTAT-AGGAATGGGATATACGGGAATGTGGCGCAGAAGAACTTTCTTGTT 1248
Query 1256 GGATACGACACTGTTTCCAAATCGTTGTCATTTaaaaaaaCAGATTGTGCAAAGATGTA 1314
||||||||||||| ||||||| | ||||||||||| ||| |||||||||||||||||
Sbjct 1249 GGATACGACACTGCTTCCAAAACAATGTCATTTAAACCAACGGATTGTGCAAAGATGTA 1307
> Ahg891090 jgi|Araly1|891090|Al_scaffold_0007_3076
Length=1323
Score = 1157 bits (626), Expect = 0.0
Identities = 1122/1352 (83%), Gaps = 71/1352 (5%)
Strand=Plus/Plus
Query 1 GCCTCTCTATTCACTTCACTTCTCTTGTCTCTATGTTTATTCTCTTCTCCTATTT-TCTC 59
|||||| ||||| ||||| ||||||||||||| ||| || ||||||| ||| ||| ||||
Sbjct 4 GCCTCTTTATTCTCTTCAGTTCTCTTGTCTCTTTGTATACTCTCTTCACCT-TTTCTCTC 62
Query 60 AAACGCAAACGCCAAACCAAAACTAGGCTTCACCGCGGATCTGATCCACCGCGATTCTCC 119
|||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 63 AAACGCAAACGCCAAATCAAAACTAGGCTTCACCGCCGATCTGATCCACCGTGATTCTCC 122
Query 120 TAAATCGCCATTCTATAACCCGGCGGAAACCCCTTCCCAACGTATGAGAAACGCTATCCA 179
|||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||
Sbjct 123 TAAATCGCCATTCTATAACCCGACGGAAACCTCTTCCCAGCGTTTGAGAAACGCTATCCA 182
Query 180 CCGATCCTTTAACCGTGCTTCCCATTTCAGTAATCTTTTTGAAAAGGATGCATCACTTAA 239
||||||| ||| ||||| || |||||||| | || | | | ||||||||||||| |||
Sbjct 183 CCGATCCGTTAGCCGTGTTTTCCATTTCACTGATATCTCTCAAAAGGATGCATCGGATAA 242
Query 240 CGCACCACAAACTGATATCA-C-CAAATATTTCGGT-ATATATCTTATGAACGTATCCCT 296
||||||||||| |||| ||| | |||||| |||| | |||||| |||||| |||| ||
Sbjct 243 CGCACCACAAATTGATCTCACCTCAAATA--GCGGTGA-ATATCTAATGAACATATCTCT 299
Query 297 TGGGAGTTGGGACACCTCCCGTCCCAATCATGGCGGCCGCTGACACCGGAAGTGATCTCA 356
| ||| |||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 300 T-GGA------ACACCTCCTTTCCCGATCATGGCGATCGCTGACACCGGAAGTGATCTCC 352
Query 357 TCTGGACGCAGTGCAAACCATGCGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACC 416
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 353 TGTGGACGCAGTGCAAACCCTGTGATGATTGTTACACTCAAGTTGATCCTCTCTTTGACC 412
Query 417 CTAAAGCGTCTTCCACATACAAAGACGTTTCTTGCCCCTCAAGCCAATGTAGGGCTCTA- 475
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 413 CTAAAGCGTCTTCCACATACAAAGACGTTTCTTGCTCCTCAAGCCAATGTACTGCCCTAG 472
Query 476 AAAGATGATGCTTCTTGTTCCAAAAAAGACAACACTTGCTCTTACTCAATGAATTACGGG 535
||| || | || |||||||||| | |||||||||||||||||||||||| | |||||||
Sbjct 473 AAA-ATCAAGCCTCTTGTTCCACAGAAGACAACACTTGCTCTTACTCAACGTCTTACGGG 531
Query 536 GATAACTCATACTCACGGGGTAATGTCGCTGTGGATACCTTAACGCTCGGCTCCACCGAT 595
||| ||||||| || |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 532 GATCGCTCATACACAAAGGGTAACATCGCCGTGGATACCTTAACGCTCGGCTCCACCGAT 591
Query 596 AACCGTCCGGTGCAGGTTAAGAATATTATCATCGGTTGTGGTCACGAA-AACGCTGTAAC 654
| ||| ||||||||| ||||||||||||| || |||||||||||| || ||||||| |||
Sbjct 592 ACCCGCCCGGTGCAGCTTAAGAATATTATTATTGGTTGTGGTCAC-AACAACGCTGGAAC 650
Query 655 ATTTAGA-AACAAGAGCTCTGGAATCGTTGGACTTGGTGGTGGTGCGGTTTCGCTCGTTA 713
|||| | || ||| ||||||||||||| ||||| ||||||||||||||||||||| | |
Sbjct 651 GTTTA-ACAAGAAGGGCTCTGGAATCGTCGGACTAGGTGGTGGTGCGGTTTCGCTCATCA 709
Query 714 AACAACTCGGAGACTCCATCGAAGGTAAATTCTCATACTGCTTGGT------A-C--CTG 764
||||| || ||||||||||| ||||||||||||||||||||||| | | |||
Sbjct 710 CGCAACTTGGCGACTCCATCGACGGTAAATTCTCATACTGCTTGGTTCCTCTAACTTCTG 769
Query 765 AAAATGATCAAACGAGCAAGATTAGTTTCGGAACCAATGCGGTTGTGTCGGGACCGGGAA 824
||||||||| ||||||||| || | |||||||||||||| |||||||||||| | |||
Sbjct 770 AAAATGATCGAACGAGCAAAATCAACTTCGGAACCAATGCTGTTGTGTCGGGAACAGGAG 829
Query 825 CTGTCTCAACTCCTTTGGTCGTGAAGTCTCCAGAGACCTTCTATTTTCTAACCCTAAAAT 884
|||||||||||||||| ||| |||||||| |||||| ||||||| ||||||||||||||
Sbjct 830 TTGTCTCAACTCCTTTGATCGCGAAGTCTCAAGAGACTTTCTATTATCTAACCCTAAAAT 889
Query 885 CTATTACCGTGGGAAGCAAG-AATATGCCAAC-CCCAGGCTCTGAT-----A--T--CAA 933
|||||| ||||||||||||| || | |||| ||| ||||| ||| | | | |
Sbjct 890 CTATTAGCGTGGGAAGCAAGGAAG-T-CCAATACCCTGGCTCAGATTCTGGAAGTGGCGA 947
Query 934 GGGAAACATGGTCATCGATTCGGGCACAACTCTAAC-TCTGTTACCTGG-GAAATATTAT 991
||||||||| |||| |||||||||||||| ||||| | ||||||| ||| | |||
Sbjct 948 GGGAAACATCATCATTGATTCGGGCACAACCCTAACGT-TGTTACCCACCGAATT-TTAC 1005
Query 992 TTCC-AGATTGAG-AGTGCTGTTGCGTCTTTAATCGATGCAGAGAGGTCGA-AAGATGAA 1048
| || || | ||| | ||| || || || | ||||||||| |||| | | ||||| |
Sbjct 1006 T-CCGAGCTCGAGGA-TGCGGTGGCTTCCTCAATCGATGCTGAGAAGAA-ACAAGATCCA 1062
Query 1049 -AGAATCGGTTCGAGTCTTTGATACAATGCAACCGCAGATCTGAAAGTCCCAGTCATTAC 1107
| || ||||| |||||| || || | |||||||| ||||||||||| |||| ||||||
Sbjct 1063 CA-AACCGGTTTGAGTCTGTGTTATAGTGCAACCGGGGATCTGAAAGTTCCAGCCATTAC 1121
Query 1108 TATGCATTTCGATGGAGCAGATGTGAAGCTTGATTCC-TATAATT-CATTTTTT-AAAGT 1164
||||||||||||||||||||||||||| || || || | |||| | ||| | ||| |
Sbjct 1122 TATGCATTTCGATGGAGCAGATGTGAATCT-GAAACCCTCCAATTGC-TTTGTACAAA-T 1178
Query 1165 CTCAGATGATTTGGTTTGCTTTGCCTTTGGCTTGAACTTGA-TTACGAGGGATGGGATAT 1223
||| || |||||||||||||||||||| || || | || || | | ||||
Sbjct 1179 CTCGGAGGATTTGGTTTGCTTTGCCTTCCGCGGGAGCCCGAGTTTC------TCC-ATAT 1231
Query 1224 ACGGGAATGTGGCGCAGAA-GAACTTTCTTGTTGGATACGACACTGTTTCCAAATCGTTG 1282
||||||| ||||| || || |||||||||||||||||||||||||||||||||| || ||
Sbjct 1232 ACGGGAACGTGGCACA-AATGAACTTTCTTGTTGGATACGACACTGTTTCCAAAACGGTG 1290
Query 1283 TCATTTaaaaaaaCAGATTGTGCAAAGATGTA 1314
|||||||| |||||||||||||||||||||
Sbjct 1291 TCATTTAAGCCAACAGATTGTGCAAAGATGTA 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5