BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33370.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947132 jgi|Araly1|947132|scaffold_703361.1 2108 0.0
> Ahg947132 jgi|Araly1|947132|scaffold_703361.1
Length=1311
Score = 2108 bits (1141), Expect = 0.0
Identities = 1256/1312 (96%), Gaps = 6/1312 (0%)
Strand=Plus/Plus
Query 76 CATTTT-AA-ATCTATAAACAATGACGAACTCGGTGGCTAAGTTGGCACTACTAGGGTTT 133
|||||| || || |||| |||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 1 CATTTTCAATATATATATACAATGCCGACCTCGGTGGCTAATTTGGCACTACTAGGGTTT 60
Query 134 TGCATTCTGCAAGTGACGAGCTTACTTGTTCCGCAAGCAAATGCTAGGGCTTTCCTTGTG 193
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TGCATTCTGCAAGTGATGAGCTTACTTGTCCCGCAAGCAAATGCTAGGGCTTTCCTTGTG 120
Query 194 TTTGGAGATTCTCTCGTTGACAATGGTAACAATGACTTTCTTGCTACCACTGCTCGTGCC 253
||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TTTGGAGATTCCCTCGTCGACAATGGTAACAATGACTTTCTAGCTACCACTGCTCGTGCC 180
Query 254 GATAATTACCCTTATGGTATCGATTTCCCAACTCATCGTCCTACGGGCCGTTTCTCCAAT 313
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 GATAATTACCCTTACGGTATCGATTTCCCAACTCACCGTCCTACCGGCCGTTTCTCCAAT 240
Query 314 GGTCTAAACATTCCAGATCTCATCAGTGAACATTTGGGTCAAGAGTCTCCAATGCCGTAC 373
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GGTCTTAACATTCCAGATCTCATCAGTGAGCATTTGGGTCAAGAGTCTCCAATGCCGTAC 300
Query 374 CTTAGTCCAATGCTGAAGAAGGACAAACTCTTAAGGGGAGCTAACTTCGCCTCCGCGGGT 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTAGTCCAATGCTGAAGAAGGACAAACTCTTAAGGGGAGCTAACTTCGCCTCCGCGGGT 360
Query 434 ATTGGAATCCTTAACGACACCGGAATCCAGTTTCTGAATATTATTAGGATCACAAAGCAG 493
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 361 ATTGGAATCCTTAACGACACCGGAATCCAGTTTCTGAACATAATTAGGATCACGAAGCAG 420
Query 494 CTAGAGTACTTCGAGCAGTACAAGGTTCGAGTAAGCGGGTTGGTCGGAGAAGAAGAGATG 553
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 421 CTGGAGTACTTCGAGCAGTACAAGGTTCGAGTGAGTGGGTTGGTCGGAGAAGAAGAGATG 480
Query 554 AATCGGCTCGTGAACGGAGCTCTTGTCCTAATAACACTTGGAGGCAATGATTTCGTCAAC 613
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 481 AATCGGCTGGTGAACGGAGCTCTTGTCCTAATAACACTTGGAGGCAACGATTTTGTCAAC 540
Query 614 AACTACTACTTGGTCCCTTTCTCTGCAAGATCTCGTCAATTCTCTCTTCCTGACTACGTT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACTACTACTTGGTCCCTTTCTCTGCAAGATCTCGTCAATTCTCTCTTCCTGACTACGTT 600
Query 674 GTCTTTGTCATTTCTGAATACCGCAAAGTCTTACGGAAAATGTACGATTTGGGTGCTCGA 733
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCTTTATCATCTCTGAATACCGCAAAGTCTTACGGAAAATGTACGATTTGGGTGCTCGA 660
Query 734 CGTGTCCTTG-TGACTGGAACAGGACCAATGGGTTGCGTCCCGGCCGAGCTGGCGCAACG 792
||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 661 CGTGTG-TTGGTGACTGGAACAGGGCCAATGGGTTGCGTCCCGGCCGAACTGGCTCAACG 719
Query 793 TAGCCGCAACGGCGAGTGTGCTACCGAACTCCAACGAGCCGCGTCACTATTCAACCCACA 852
|||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 720 TAGCCGCAACGGCGAGTGTGCTACTGAACTACAACGAGCTGCTTCACTATTCAACCCACA 779
Query 853 ACTAATTCAAATGATAACAGACCTCAACAACGAAGTTGGATCTTCGGCCTTCATTGCCGC 912
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTAGTTCAAATGATAACCGACCTCAACAACGAAGTTGGATCTTCGGCCTTCATTGCCGC 839
Query 913 TAATACTCAACAAATGCACATGGACTTCATTAGCGACCCACAAGCATATGGATTCGTCAC 972
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 840 TAATACTCAACAAATGCACATGGACTTCATCAGCGACCCACAAGCATATGGTTTCGTCAC 899
Query 973 GTCGAAGGTGGCTTGTTGTGGACAAGGGCCGTACAATGGGATAGGGCTATGCACTCCATT 1032
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 900 GTCGAAGGTGGCTTGTTGTGGACAAGGGCCCTACAATGGGATAGGGCTATGCACACCATT 959
Query 1033 ATCAAATCTTTGCCCAAACAGAGATCTCTTTGCCTTTTGGGATCCTTTTCACCCATCAGA 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATCAAATCTTTGCCCAAACAGAGATCTCTTTGCCTTTTGGGATCCTTTTCACCCATCAGA 1019
Query 1093 AAAAGCAAGTAGAATCATAGCTCAACAAATCCTCAATGGCTCTCCTGAATACATGCATCC 1152
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAAGCAAGTAGAATCATTGCTCAACAAATCCTCAATGGCTCTCCTGAATACATGCATCC 1079
Query 1153 CATGAATCTTAGCACCATCCTCACCGTTGATTCCATGACCTAAGCTTCTATTCCTCATCT 1212
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1080 CATGAATCTTAGCACCATCCTCACCGTTGATTCCATGACCTAAGCTTCTACTCATCATCT 1139
Query 1213 ATCCCAAATCCACtttatgctttgtttttgttttgcctttctcgtttattatatattttt 1272
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1140 ATCCCAAATCCACTCTATGCTTTGTTTTTGTTTTGCCTTTCTCTTTTATTATGTATTTTT 1199
Query 1273 aCATTGGCACTTTAATTAGTTTCCTTGAGTTATGTTGTGAGTTTTGTGTTGTTCATCAAT 1332
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ACATTGGTGCTTTAATTAATTTCCTTGAGTTATGTTGTGAGTTTTGTGTTGTTCATCAAT 1259
Query 1333 AATT-AGTCACCAA-TTGTGAGCTGAGAAGTAATATTCAACAATCTTACGAA 1382
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1260 AATTTAGTCACCAAATTGTGAGCTGCGAAGTAATATTCAACAATCTTACGAA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5