BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33405.1
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898607 jgi|Araly1|898607|Al_scaffold_0005_2573 196 3e-49
Ahg331550 jgi|Araly1|331550|fgenesh1_pm.C_scaffold_8000893 106 5e-22
Ahg951907 jgi|Araly1|951907|scaffold_24700002.1 67.6 2e-10
> Ahg898607 jgi|Araly1|898607|Al_scaffold_0005_2573
Length=759
Score = 196 bits (106), Expect = 3e-49
Identities = 191/230 (83%), Gaps = 13/230 (6%)
Strand=Plus/Plus
Query 111 TGATGAAGAGAAAACGCG-AGAAGAATAGCCGCAAGACCTCACGCTCGATGAAACGACTT 169
||||||||||| ||||| || ||||| ||| ||||||||| |||| ||||||||||
Sbjct 2 TGATGAAGAGAGGACGCGAAG-AGAATTGCCATGAGACCTCACCCTCGCCGAAACGACTT 60
Query 170 CTTCACAGCAGATTTATCT-ATATCCCTCAAGATCTGACGGTGGAGGTACTaaaaaaaCT 228
|||||| || || |||| | |||| |||| |||||||| || ||| |||||||||||||
Sbjct 61 CTTCACGGCGGAGTTAT-TGATATTCCTCTGGATCTGACCGTAGAGATACTAAAAAAACT 119
Query 229 CCCGGCGAAATCTCTAGTGAGGTTCCAGTGTGTCTCGAAGCTGTGGTCTTCAATTATCAG 288
||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct 120 CCCGGCGAAATCTCTAGTGAGGTTCCAATGTGTGTCGAAGCTGTGGTCATCCATTATCAG 179
Query 289 CAGAC--A-AG--T-CATAGAGTCGAATATAGTGACTCGATCTTTAACTC 332
||| | | || | ||||||||||| || || ||||||||| | ||||
Sbjct 180 CAGTCGTAGAGACTTCATAGAGTCGA-TA--GTCACTCGATCTCTGACTC 226
> Ahg331550 jgi|Araly1|331550|fgenesh1_pm.C_scaffold_8000893
Length=948
Score = 106 bits (57), Expect = 5e-22
Identities = 354/484 (73%), Gaps = 74/484 (15%)
Strand=Plus/Plus
Query 519 TATATAACCCTACCACAAGGCAGTCCTT-TCGACTACCGATA-ATGA---CG--GCA-AT 570
|||||||||||||||||||||||||||| | ||| || | | | || || ||| ||
Sbjct 263 TATATAACCCTACCACAAGGCAGTCCTTGT--ACTTCCTAAAGAAGAAAACGATGCACAT 320
Query 571 GG-GAACTTGCTTCTTCGGATATGACCC-CATAGAGAATCAATACAAAGTATTGCTCATA 628
|| || || | ||| |||| || ||||| | | ||||||||||| ||||||||| || ||
Sbjct 321 GGAGA-CTAGTTTCATCGGGTACGACCCTCTT-GAGAATCAATATAAAGTATTGTTCTTA 378
Query 629 CCATT-T-CA-TACTATGAAGCAAGC-TTGTCAAGTTTTCATAATGGGA-AATCC-CACG 682
||| | || | || || ||| || ||||| |||||| | | ||||| || | ||
Sbjct 379 CCAAAGTACAATCCT--GA-GCA-GCCTTGTCTAGTTTTTACATTGGGAGAAACAGCA-- 432
Query 683 ACGAAGCAGTGGAGGAAC-ATCCAAGGTGTTAGACTTGGATCTCACTC-TCCACTT-CTT 739
|||||| |||| || | || ||||| ||| || ||||||| | |||| || |
Sbjct 433 ACGAAG---TGGAAGA-CTATACAAGGCGTT-GA-----ATCTCAC-CATCCA-TTGCAA 480
Query 740 GGTG-GAGTTTGCGTCAATGGG-GCTATCTATTTTCGAGC-GGAA--GCTAAGACAGTAC 794
|||| | ||||| |||||||| | ||||||| | ||| || | | | | || |
Sbjct 481 GGTGCGC-TTTGCATCAATGGGAGA-ATCTATTACCAAGCAGGGATTGTTGAT-CA--A- 534
Query 795 TTTATGAATCTACAT-T-TATATTAA-TGA-GT-TTTT-ATGTTAGGTCGGA--AGTTTT 846
| |||| ||||| | | |||| || ||| | |||| ||||||||||||| |||||
Sbjct 535 T--ATGACTCTACTTCTCTATACAAACTGATGAGTTTTGATGTTAGGTCGGAGGAGTTTC 592
Query 847 TTATCATGTCCAGTCTCC-ACAAACATTGATGAATCATCACGGTTCC-ACTCTAATAAAC 904
|| ||| | || |||| | ||||||||||| || | | || ||| | ||||||||||
Sbjct 593 ATAACAT-TGAAG-CTCCTA-AAACATTGATGGATTA-C-CG-TTCTTA-TCTAATAAAC 645
Query 905 TACCAAGGGATGTTAGGATTCGTGAGTTGCACGAAGAAGGCCGTTGAAATTTGGGTTATG 964
|||||||||| ||||||||||||| ||||| ||| |||| ||| || ||||||||||||
Sbjct 646 TACCAAGGGAAGTTAGGATTCGTGTGTTGC--GAA-AAGGGCGTGGATATTTGGGTTATG 702
Query 965 TAGA 968
|||
Sbjct 703 GAGA 706
> Ahg951907 jgi|Araly1|951907|scaffold_24700002.1
Length=520
Score = 67.6 bits (36), Expect = 2e-10
Identities = 101/130 (78%), Gaps = 14/130 (11%)
Strand=Plus/Plus
Query 512 GTAGCTATATATAACCCTACCACAAGGCAGTCCTT-TCGACTACCGATA-ATGA---CG- 565
|||| | |||||||||||||||||||||||||||| | ||| || | | | || ||
Sbjct 219 GTAGTTTTATATAACCCTACCACAAGGCAGTCCTTGT--ACTTCCTAAAGAAGAAAACGA 276
Query 566 -GCA-ATGG-GAACTTGCTTCTTCGGATATGACCC-CATAGAGAATCAATACAAAGTATT 621
||| |||| || || | ||| |||| || ||||| | | ||||||||||| ||||||||
Sbjct 277 TGCACATGGAGA-CTAGTTTCATCGGGTACGACCCTCTT-GAGAATCAATATAAAGTATT 334
Query 622 GCTCATACCA 631
| || |||||
Sbjct 335 GTTCTTACCA 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47615523333
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5