BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G33406.1
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924675 jgi|Araly1|924675|scaffold_200236.1 496 3e-139
Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1 457 1e-127
> Ahg924675 jgi|Araly1|924675|scaffold_200236.1
Length=482
Score = 496 bits (268), Expect = 3e-139
Identities = 408/472 (86%), Gaps = 24/472 (5%)
Strand=Plus/Plus
Query 787 TTGACTCAATGTCGA-TTGAACGACATGATATTTGTGAAATACAATCGCGCTCTGCAACG 845
|||| ||||| || | |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1 TTGAATCAATCTC-AGTTGAACGACATGGTATTTGTGAAATACAATCGCGCTCTACAACG 59
Query 846 TCGATACAAGA-GAAATGACACCTTCGATCCTATTTTGTTGAATGAAATTGATCAATGCA 904
||||||||||| |||| |||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 60 TCGATACAAGAGGAAA-GACACCGTCGATCCTATTGTGTTGGATGAAATTGATGAATGCA 118
Query 905 ATGAGTGGCTGACTGGGAGAATGGAGGAGAACTCATCTGATACTGAAAATGATGATCTTG 964
|||||||||||||||||| ||| | | | |||||||| || || ||||||||||
Sbjct 119 ATGAGTGGCTGACTGGGACAAT----G-G-A---ATCTGATAATG--AA-GATGATCTTG 166
Query 965 TGTTTGAAAATGATGACTTGACATGGGCTGAAGTTGGCGAGGCCGCAGGAGCTAATGATC 1024
|||||||| ||||| ||||||||||| || |||||| ||||||| ||| ||||||||||
Sbjct 167 TGTTTGAAGATGATAACTTGACATGGAATGTAGTTGGTGAGGCCGTAGGTGCTAATGATC 226
Query 1025 CTTATTATGCAACTAGATCAACAGCTGCTTCAAGTAGATTTGAGAAAGGAAAAGGTATTG 1084
||||||||||||||||||| | ||||||||||||||| |||| ||||||||||| |||
Sbjct 227 CTTATTATGCAACTAGATCGGCTGCTGCTTCAAGTAGAATTGAAAAAGGAAAAGGCGTTG 286
Query 1085 CTAGTGATTCTGGTGGACATGGTAATTC-AAGAGCATCTCGCAAGACACC-TAATAGTTC 1142
||| ||||||||||||||||||| ||| || ||||||||||| | || | | || |||
Sbjct 287 CTACTGATTCTGGTGGACATGGTCGTTCCAA-AGCATCTCGCAGGCCATCATC-TACTTC 344
Query 1143 TCGTCCTATGACTTTGGTTGATGAGGATGAAGAGATGGAAGATGATTTTC-TTGGAGCAG 1201
| |||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| |||
Sbjct 345 TAGTCCTATGACTTTGGTTGATGATGATGAAGAGATGGAAGAGGATTT-CATTGGACCAG 403
Query 1202 AGTATGAGGACACTCTTTTGGACAAGGATGATTATGAGT-TCGATGATTCTG 1252
||| |||||| || ||||||||||||||||||||||||| | ||||||||||
Sbjct 404 AGTTTGAGGATACGCTTTTGGACAAGGATGATTATGAGTAT-GATGATTCTG 454
> Ahg486108 jgi|Araly1|486108|fgenesh2_kg.5__2100__AT3G56680.1
Length=1519
Score = 457 bits (247), Expect = 1e-127
Identities = 325/361 (90%), Gaps = 11/361 (3%)
Strand=Plus/Plus
Query 1246 GATTCTGCTGGATATAACCAAATTCCAAGTATTCCTGCTCCTCTTGGCTTCGGGCCACCT 1305
||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1077 GATTC-ACTGGATATAACCAAATTCCAAGCACTCCTGCTCCTCTTGGCTTCGGGCCACCT 1135
Query 1306 CCAAGCTCTACCATGAGTCCCTATGGCA-CTACAATGGATGCAATGTATATGCATTTGCC 1364
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 1136 CCAAGCTCTATCATGAGTCCCTATGGCAGC-ACAATGGATGCAATGTATATGCATTGGCC 1194
Query 1365 TAATGCAGCCATGATGTATGCTCATCCCTATGAGCAGTTGAGAAATGGCCCTCTTCAGGC 1424
|||| |||| ||||||||||||||||| ||||||||||| || |||||| ||||||||||
Sbjct 1195 TAATACAGCTATGATGTATGCTCATCCGTATGAGCAGTTTAGGAATGGCTCTCTTCAGGC 1254
Query 1425 ACAGTTCGTTCAACAACCCTTGAGCTTCGACT--ACTGCAGAAACGCTAGGTGCTCGTCT 1482
|||||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||
Sbjct 1255 ACAGTTCGTTCAACAACCCTTGAGCTTCGACTGTA-TGCAGAACCGCTAGGTGCTTGTCT 1313
Query 1483 CTTTGTCAATCTTCCTCTCTCTATACCttttttttttGTAGAACCTAGGAACTGTTGTAA 1542
| ||||||||||| ||||| | |||| |||| || ||||||| ||||| |||||||||
Sbjct 1314 CGTTGTCAATCTTTATCTCTGTTTACCAGTTTTCTT-GTAGAAC-TAGGAGCTGTTGTAA 1371
Query 1543 TGGAA-TTTTGGGGCTT-TAATGTCAAAATTCAGGATGAAGATACCTTTTGTTCCTTTTA 1600
||||| |||||| | || |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1372 TGGAAATTTTGGAG-TTGTAATGTCAAATTTCAGAATGAAGATACCTTTTGTTCCTTTTA 1430
Query 1601 C 1601
|
Sbjct 1431 C 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5