BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G34828.1 Length=276 Score E Sequences producing significant alignments: (Bits) Value Ahg925211 jgi|Araly1|925211|scaffold_200772.1 350 4e-96 Ahg925212 jgi|Araly1|925212|scaffold_200773.1 339 8e-93 Ahg933133 jgi|Araly1|933133|scaffold_401121.1 333 4e-91 Ahg925216 jgi|Araly1|925216|scaffold_200777.1 333 4e-91 Ahg925210 jgi|Araly1|925210|scaffold_200771.1 257 2e-68 Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701 250 4e-66 Ahg474752 jgi|Araly1|474752|fgenesh2_kg.1__4706__AT5G34828.1 222 9e-58 > Ahg925211 jgi|Araly1|925211|scaffold_200772.1 Length=316 Score = 350 bits (189), Expect = 4e-96 Identities = 249/278 (90%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60 |||||||||||| |||| ||||||||||||||| ||||||| ||||||| |||||||||| Sbjct 21 ATGGCGACTCAAGCAATGAAAAAGATATACAGTATTTTGATGATTGTAGTTTTATTTACG 80 Query 61 ATGATGGTTTCAACATTTGCGAGTACGA-TAGAAATATGTGTTAAACATTGTGTCCCAAA 119 |||||||||||||||| |||| ||| | | ||| | |||||||| ||||||||||| || Sbjct 81 ATGATGGTTTCAACATACGCGAATAC-AGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139 Query 120 TCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178 ||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||| Sbjct 140 TCAGTGCATGAAAGT-TTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAA 198 Query 179 AACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGACT 238 | ||||||||||| ||||||||| || ||| |||||||||| ||||||||||| ||||| Sbjct 199 AGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATTCTACGCCATGCCTCCTGGAGACT 258 Query 239 TGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276 | ||||||||||||||||| |||||||||||||||||| Sbjct 259 TATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296 > Ahg925212 jgi|Araly1|925212|scaffold_200773.1 Length=316 Score = 339 bits (183), Expect = 8e-93 Identities = 247/278 (89%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60 ||||||||||||| ||| |||||||||||||||||||||| || |||| |||||||||| Sbjct 21 ATGGCGACTCAAATAATGCAAAAGATATACAGTGTTTTGATGATCGTAGTTTTATTTACG 80 Query 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120 |||||||||||||||| ||||||||| | || | |||||||| ||||||||||| ||| Sbjct 81 ATGATGGTTTCAACATACGCGAGTACGGTCGAGGTGTGTGTTAAGCATTGTGTCCCGAAT 140 Query 121 CAGTGCAT-AAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178 |||||||| |||| | || ||||||||||||| ||||||||||||||||||||||||||| Sbjct 141 CAGTGCATGAAAA-T-TTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAA 198 Query 179 AACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGACT 238 | ||||||||||| ||||||||| || ||| |||||||||| |||||||||| ||||| Sbjct 199 AGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATTCTACGCCATGCCTCCAGGAGACT 258 Query 239 TGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276 | ||||||||||||||||| |||||||||||||||||| Sbjct 259 TATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296 > Ahg933133 jgi|Araly1|933133|scaffold_401121.1 Length=316 Score = 333 bits (180), Expect = 4e-91 Identities = 247/279 (89%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60 ||||||||||||||||| |||||||| |||||||||||||| ||||||| |||||||||| Sbjct 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80 Query 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120 |||||||||||||||| ||||||||| ||||| | |||||||| ||||||||||| ||| Sbjct 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140 Query 121 CAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 179 ||||| || ||||| || ||||||||||||| ||| |||||||||||||||||||||||| Sbjct 141 CAGTGTATGAAAGT-TTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAA 199 Query 180 ACTCTGCAACCA-GAACAAATTTGCTCATGTGAAATTCTACTCCA-TGCCTCCTCAAGAC 237 |||||||||||| || |||||||||||||| ||||| |||| | | | |||||| |||| Sbjct 200 ACTCTGCAACCAAGA-CAAATTTGCTCATGAGAAATACTACACAACT-CCTCCTGGAGAC 257 Query 238 TTGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276 || ||||||| |||||||| |||||||||||||| ||| Sbjct 258 TTATGCGAGGTTTTTTTTGGGTTACTATGTAATAATTGA 296 > Ahg925216 jgi|Araly1|925216|scaffold_200777.1 Length=317 Score = 333 bits (180), Expect = 4e-91 Identities = 247/279 (89%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGC-TTTATTTAC 59 ||||||||||||||||| ||||| ||||||||||||||||| || ||| | ||||||||| Sbjct 21 ATGGCGACTCAAACAATGAAAAATATATACAGTGTTTTGATGATCGTA-CTTTTATTTAC 79 Query 60 GATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAA 119 |||||||||||||||| ||||||||| | ||| | |||||||| ||||||||||| || Sbjct 80 AATGATGGTTTCAACATACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139 Query 120 TCAGTGCAT-AAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177 ||||||||| |||| | || |||||||| |||| |||||||||||||||||||||||||| Sbjct 140 TCAGTGCATGAAAA-T-TTCTAAAAAGGTAACTATTCCTTTATGTGAGAATGCTTGCAAA 197 Query 178 AAACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGAC 237 || ||||||||||| ||||||||| || ||| ||||| |||| ||||||||||| |||| Sbjct 198 AAGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATACTACACCATGCCTCCTGGAGAC 257 Query 238 TTGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276 || ||||||||||||||||| |||||||||||||||||| Sbjct 258 TTATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296 > Ahg925210 jgi|Araly1|925210|scaffold_200771.1 Length=313 Score = 257 bits (139), Expect = 2e-68 Identities = 187/210 (89%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATCATTGTAGCTTTATTTAC 59 |||||||||||| |||| ||||| |||||||| || |||||| ||||||| |||||||| Sbjct 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79 Query 60 GATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAA 119 ||||||||||| ||||| |||||||||| | ||| | |||||||| ||||||||||| || Sbjct 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139 Query 120 TCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178 ||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||| Sbjct 140 TCAGTGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 198 Query 179 AACTCTGCAACCAGAACAAATTTGCTCATG 208 || |||||||||| ||||||||| |||||| Sbjct 199 AATTCTGCAACCAAAACAAATTTTCTCATG 228 > Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701 Length=273 Score = 250 bits (135), Expect = 4e-66 Identities = 190/216 (88%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATCATTGTAGCTTTATTTAC 59 ||||||||||||||||| |||||||||||||| || |||||| ||||||| ||||||||| Sbjct 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59 Query 60 GATGA-TGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAA 118 ||| | |||||||||||| |||||||||| | ||| | |||||||| ||||||||||| | Sbjct 60 GAT-AGTGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118 Query 119 ATCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177 |||| ||||| ||||| || | |||||||||||||||||||||||||||||||||||||| Sbjct 119 ATCAATGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177 Query 178 AAACTCTGCAACCAGAACAAATTTGCTCATGTGAAA 213 || | |||||||| ||||||||| || ||| |||| Sbjct 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAA 213 > Ahg474752 jgi|Araly1|474752|fgenesh2_kg.1__4706__AT5G34828.1 Length=159 Score = 222 bits (120), Expect = 9e-58 Identities = 147/160 (92%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120 |||||||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||| Sbjct 1 ATGATGGTTTCAACATGTGCGAGTACGGTAGAAATGTGTGTTAAGCATTGTGTCCCAAAT 60 Query 121 CAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 179 ||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGTGTATGAAAGT-TTCTAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 119 Query 180 ACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTAC 219 |||||||||| |||||||||||| || ||||||||||| Sbjct 120 GTTCTGCAACCAAAACAAATTTGCTGATATGAAATTCTAC 159 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9615208428 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5