BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G34828.1
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925211 jgi|Araly1|925211|scaffold_200772.1 350 4e-96
Ahg925212 jgi|Araly1|925212|scaffold_200773.1 339 8e-93
Ahg933133 jgi|Araly1|933133|scaffold_401121.1 333 4e-91
Ahg925216 jgi|Araly1|925216|scaffold_200777.1 333 4e-91
Ahg925210 jgi|Araly1|925210|scaffold_200771.1 257 2e-68
Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701 250 4e-66
Ahg474752 jgi|Araly1|474752|fgenesh2_kg.1__4706__AT5G34828.1 222 9e-58
> Ahg925211 jgi|Araly1|925211|scaffold_200772.1
Length=316
Score = 350 bits (189), Expect = 4e-96
Identities = 249/278 (90%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60
|||||||||||| |||| ||||||||||||||| ||||||| ||||||| ||||||||||
Sbjct 21 ATGGCGACTCAAGCAATGAAAAAGATATACAGTATTTTGATGATTGTAGTTTTATTTACG 80
Query 61 ATGATGGTTTCAACATTTGCGAGTACGA-TAGAAATATGTGTTAAACATTGTGTCCCAAA 119
|||||||||||||||| |||| ||| | | ||| | |||||||| ||||||||||| ||
Sbjct 81 ATGATGGTTTCAACATACGCGAATAC-AGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
Query 120 TCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178
||||||||| ||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 140 TCAGTGCATGAAAGT-TTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAA 198
Query 179 AACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGACT 238
| ||||||||||| ||||||||| || ||| |||||||||| ||||||||||| |||||
Sbjct 199 AGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATTCTACGCCATGCCTCCTGGAGACT 258
Query 239 TGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
| ||||||||||||||||| ||||||||||||||||||
Sbjct 259 TATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296
> Ahg925212 jgi|Araly1|925212|scaffold_200773.1
Length=316
Score = 339 bits (183), Expect = 8e-93
Identities = 247/278 (89%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60
||||||||||||| ||| |||||||||||||||||||||| || |||| ||||||||||
Sbjct 21 ATGGCGACTCAAATAATGCAAAAGATATACAGTGTTTTGATGATCGTAGTTTTATTTACG 80
Query 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120
|||||||||||||||| ||||||||| | || | |||||||| ||||||||||| |||
Sbjct 81 ATGATGGTTTCAACATACGCGAGTACGGTCGAGGTGTGTGTTAAGCATTGTGTCCCGAAT 140
Query 121 CAGTGCAT-AAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178
|||||||| |||| | || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 141 CAGTGCATGAAAA-T-TTCTAAAAAGGCAACTATTCCTTTATGTGAGAATGCTTGCAAAA 198
Query 179 AACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGACT 238
| ||||||||||| ||||||||| || ||| |||||||||| |||||||||| |||||
Sbjct 199 AGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATTCTACGCCATGCCTCCAGGAGACT 258
Query 239 TGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
| ||||||||||||||||| ||||||||||||||||||
Sbjct 259 TATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296
> Ahg933133 jgi|Araly1|933133|scaffold_401121.1
Length=316
Score = 333 bits (180), Expect = 4e-91
Identities = 247/279 (89%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGCTTTATTTACG 60
||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 21 ATGGCGACTCAAACAATGAAAAAGATCTACAGTGTTTTGATGATTGTAGTTTTATTTACG 80
Query 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120
|||||||||||||||| ||||||||| ||||| | |||||||| ||||||||||| |||
Sbjct 81 ATGATGGTTTCAACATACGCGAGTACGGTAGAAGTGTGTGTTAAGCATTGTGTCCCGAAT 140
Query 121 CAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 179
||||| || ||||| || ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 141 CAGTGTATGAAAGT-TTCTAAAAAGGCAACTATTCTTTTATGTGAGAATGCTTGCAAAAA 199
Query 180 ACTCTGCAACCA-GAACAAATTTGCTCATGTGAAATTCTACTCCA-TGCCTCCTCAAGAC 237
|||||||||||| || |||||||||||||| ||||| |||| | | | |||||| ||||
Sbjct 200 ACTCTGCAACCAAGA-CAAATTTGCTCATGAGAAATACTACACAACT-CCTCCTGGAGAC 257
Query 238 TTGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
|| ||||||| |||||||| |||||||||||||| |||
Sbjct 258 TTATGCGAGGTTTTTTTTGGGTTACTATGTAATAATTGA 296
> Ahg925216 jgi|Araly1|925216|scaffold_200777.1
Length=317
Score = 333 bits (180), Expect = 4e-91
Identities = 247/279 (89%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAGTGTTTTGATCATTGTAGC-TTTATTTAC 59
||||||||||||||||| ||||| ||||||||||||||||| || ||| | |||||||||
Sbjct 21 ATGGCGACTCAAACAATGAAAAATATATACAGTGTTTTGATGATCGTA-CTTTTATTTAC 79
Query 60 GATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAA 119
|||||||||||||||| ||||||||| | ||| | |||||||| ||||||||||| ||
Sbjct 80 AATGATGGTTTCAACATACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
Query 120 TCAGTGCAT-AAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177
||||||||| |||| | || |||||||| |||| ||||||||||||||||||||||||||
Sbjct 140 TCAGTGCATGAAAA-T-TTCTAAAAAGGTAACTATTCCTTTATGTGAGAATGCTTGCAAA 197
Query 178 AAACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTACTCCATGCCTCCTCAAGAC 237
|| ||||||||||| ||||||||| || ||| ||||| |||| ||||||||||| ||||
Sbjct 198 AAGCTCTGCAACCAAAACAAATTTTCTGATGAGAAATACTACACCATGCCTCCTGGAGAC 257
Query 238 TTGTGCGAGGGATTTTTTGGTTTACTATGTAATAACTGA 276
|| ||||||||||||||||| ||||||||||||||||||
Sbjct 258 TTATGCGAGGGATTTTTTGGGTTACTATGTAATAACTGA 296
> Ahg925210 jgi|Araly1|925210|scaffold_200771.1
Length=313
Score = 257 bits (139), Expect = 2e-68
Identities = 187/210 (89%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATCATTGTAGCTTTATTTAC 59
|||||||||||| |||| ||||| |||||||| || |||||| ||||||| ||||||||
Sbjct 21 ATGGCGACTCAAGCAATGAAAAATATATACAGTTG-TTTGATGATTGTAGTTTTATTTAT 79
Query 60 GATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAA 119
||||||||||| ||||| |||||||||| | ||| | |||||||| ||||||||||| ||
Sbjct 80 GATGATGGTTTTAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGAA 139
Query 120 TCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 178
||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 140 TCAGTGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAA 198
Query 179 AACTCTGCAACCAGAACAAATTTGCTCATG 208
|| |||||||||| ||||||||| ||||||
Sbjct 199 AATTCTGCAACCAAAACAAATTTTCTCATG 228
> Ahg907620 jgi|Araly1|907620|Al_scaffold_0002_701
Length=273
Score = 250 bits (135), Expect = 4e-66
Identities = 190/216 (88%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATCATTGTAGCTTTATTTAC 59
||||||||||||||||| |||||||||||||| || |||||| ||||||| |||||||||
Sbjct 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
Query 60 GATGA-TGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAA 118
||| | |||||||||||| |||||||||| | ||| | |||||||| ||||||||||| |
Sbjct 60 GAT-AGTGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
Query 119 ATCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177
|||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATCAATGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177
Query 178 AAACTCTGCAACCAGAACAAATTTGCTCATGTGAAA 213
|| | |||||||| ||||||||| || ||| ||||
Sbjct 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAA 213
> Ahg474752 jgi|Araly1|474752|fgenesh2_kg.1__4706__AT5G34828.1
Length=159
Score = 222 bits (120), Expect = 9e-58
Identities = 147/160 (92%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 61 ATGATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAAAT 120
|||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1 ATGATGGTTTCAACATGTGCGAGTACGGTAGAAATGTGTGTTAAGCATTGTGTCCCAAAT 60
Query 121 CAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 179
||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGTGTATGAAAGT-TTCTAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAAAA 119
Query 180 ACTCTGCAACCAGAACAAATTTGCTCATGTGAAATTCTAC 219
|||||||||| |||||||||||| || |||||||||||
Sbjct 120 GTTCTGCAACCAAAACAAATTTGCTGATATGAAATTCTAC 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9615208428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5