BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G34830.1

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg914086 jgi|Araly1|914086|Al_scaffold_0001_4340                    643    0.0  


> Ahg914086 jgi|Araly1|914086|Al_scaffold_0001_4340
Length=465

 Score =  643 bits (348),  Expect = 0.0
 Identities = 383/400 (96%), Gaps = 2/400 (1%)
 Strand=Plus/Plus

Query  70   GAGAATTCAAAGAAGAGGAAGCAAGAATATCTCCTTACCCAACCATCTATAGATGGTGTC  129
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  67   GAGAATTCAAAGAAGAGGAAGCAAGAATATCTCCTTACCCAACTATCTATAGATGGTGTC  126

Query  130  GAGAATAGTGTA-GTCCCAATGGAGATTGTCAACAAATTCGTTTTTGAGGAAACTCCAAA  188
            ||||||| || | || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  127  GAGAATAATG-ACGTACCAATGGAGATTGTCAACAAAATCGTTTTTGAGGAAACTCCAAA  185

Query  189  AAGAAAGGGTCAGATATTTGGGTTAGGAAAACTAGGTGTAGCTCGATATAAGTCTCATTC  248
            |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  186  AAGAAAAGGTCGGATATTTGGGTTAGGAAAACTAGGTGTAGCTCGATATAAGTCTCGTTC  245

Query  249  CACATCGTCGTATTCATGTGATCCCATGCTTGAGGCGTCTCTCAAAGAGAAAGAAGCACG  308
            ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  246  CACATCGTCGTGTTCATGTGATCCCATGCTCGAGGCGTCTCTCAAAGAGAAAGAAGCACG  305

Query  309  GATTGAAGCTTTGGAGACTCAAATGGCCGAAGAGAAAGCTGAGAACAAGCGCCGAACCGA  368
            ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct  306  GATTGAAGCTTTGGAGACTCAAATGGCCGAAGAGAAAGCCGAGAACAAGCACCGAACTGA  365

Query  369  TGAGATGGCAAAGGAGATAGCCGAAAACAAGAAAAGTTCCGAGACGATGATGCGTTTCAT  428
            ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct  366  TGAGATGGCAAAGGAGATAGCCGAAAACAAGAAAAGTTCTGAGGCGATGATGCGTTTCAT  425

Query  429  GGAAGATATGCGAATGCGGTTTCCCAATTCTAGTTCTTAG  468
            || |||||||||||||||||||||||||||||||||||||
Sbjct  426  GGGAGATATGCGAATGCGGTTTCCCAATTCTAGTTCTTAG  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16941081516


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5