BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G34850.1
Length=2030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493578 jgi|Araly1|493578|fgenesh2_kg.7__3011__AT5G34850.1 2691 0.0
> Ahg493578 jgi|Araly1|493578|fgenesh2_kg.7__3011__AT5G34850.1
Length=1943
Score = 2691 bits (1457), Expect = 0.0
Identities = 1798/1958 (92%), Gaps = 42/1958 (2%)
Strand=Plus/Plus
Query 35 TTTTCTTGACACCAAACTATTTCTAAGAATATCAAATT----A----GTTAAAAGGTTAC 86
|||| | ||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 1 TTTTGTAGACACCAAACTATTTCTAA-AATATCAAATTAGAAAGTTGGTTAAAAGGTTAC 59
Query 87 GTTATGCACTTTAATGCTTAAGACCCAATCCATTTCCCTCAACCAATCATAAATCTCCAC 146
|||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 60 GTTATGCACTTTTATGCTTAAGACCCAATCTATTTGACTCAGCCAATCATAAATCTCCAC 119
Query 147 GTATGTGG---TCACCTTCTTCGATAGCTCATTCATACATATCCGACGGGCTTATTAATG 203
|||||||| ||| |||||||||||| | ||||||| |||||||||||| |||| ||||
Sbjct 120 GTATGTGGTTATCATCTTCTTCGATAG-T-ATTCATATATATCCGACGGGATTATCAATG 177
Query 204 TCATCGAGACGATAATCTCCCAAATGTCATCTCCTTCATC-TCTCAG-GTaaaaaaaCTG 261
|||||||| ||||||||||||||||||| | ||||| | ||| || | | | ||
Sbjct 178 GCATCGAGAAGATAATCTCCCAAATGTCA--T-CTTCAACTTCT-AGATTTGGGAGATTG 233
Query 262 A-G--T-CG-AGATTTGGTGACGTGATGAATCATTTGGTGATAATCTCTGTGTTCTTGAG 316
| | | | ||||| || |||| |||||||||||||||| ||||||||||||||||
Sbjct 234 AGGTATGGGCAGATTCAGT---GTGAAGAATCATTTGGTGATATTCTCTGTGTTCTTGAG 290
Query 317 CTCAGTATTGTTGTTATATAGAGGAGAAT-CTGGAATCACAAGTAGTTTTATTCGATCTG 375
||||| |||||||| ||||||||| || |||| | ||||||||||||||| |||| |
Sbjct 291 CTCAG---TGTTGTTAAATAGAGGAG-ATGCTGGGGTTACAAGTAGTTTTATTAGATCCG 346
Query 376 AATGGCCTGCGGTTGATATACCACTTGATCATCATGTTTTCAAAGTCCCAAAAGGATATA 435
||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 347 AATGGCCAGCGGTCGATATTCCACTTGACCATCATGTATTCAAAGTCCCAAAAGGGTATA 406
Query 436 ATGCACCACAACAAGTACACATAACTCAAGGTGATTATGATGGTAAAGCTGTTATCATCT 495
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ATGCTCCACAACAAGTTCATATAACTCAAGGTGATTATGATGGTAAAGCTGTTATCATCT 466
Query 496 CTTGGGTTACACCTGATGAACCTGGTTCTAGCCAAGTACATTACGGTGCGGTTCAGGGGA 555
| ||||||||||| ||||| |||||| ||||| ||||| ||||||| ||||| ||||| |
Sbjct 467 CATGGGTTACACCAGATGAGCCTGGTCCTAGCAAAGTATATTACGGCGCGGTGCAGGGCA 526
Query 556 AATATGAGTTTGTTGCTCAAGGGACTTACCATAACTACACGTTTTACAAGTATAAGTCTG 615
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 527 AATATGAGTTTGTTGCTCAAGGGACATACCATAACTACACATTTTACAAATATAAGTCTG 586
Query 616 GCTTTATTCATCACTGCCTTGTCTCTGACCTTGAGCATGATACAAAATACTATTACAAGA 675
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 587 GGTTTATTCATCACTGCCTTGTCTCTGGCCTTGAGCATGATACAAAATACTATTACAAGA 646
Query 676 TTGAAAGCGGTGAATCTTCTCGAGAGTTTTGGTTTGTTACACCACCACATG-TACATCCA 734
| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 647 TCGAAAGCGGTGAATCTTCTCGAGAGTTTTGGTTTGTTACACCACCAGA-GATACATCCA 705
Query 735 GATGCTTCCTACAAGTTTGGTATTATAGGCGATATGGGTCAGACATTCAACTCGTTATCC 794
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 706 GATGCTTCCTACAAGTTTGGTATTATAGGCGATATGGGCCAAACATTCAACTCGTTATCC 765
Query 795 ACGTTGGAACATTACATGGAGAGTGGAGCTCAGGCTGTTTTATTTCTTGGAGATCTTTCT 854
|| ||||||| |||||| ||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 766 ACACTGGAACACTACATGCAGAGTGGAGCTCAAGCTGTCTTATTTCTAGGAGATCTCTCT 825
Query 855 TATGCTGATAGATATCAGTATAATGACGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTT 914
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TATGCTGACAGATATCAGTATAATGACGTTGGTGTGAGATGGGATAGCTGGGGTCGTTTT 885
Query 915 GTGGAGCGTAGTACCGCTTATCAACCGTGGCTTTGGTCTGCAGGAAATCATGAAGTAGAT 974
||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 886 GTGGAGCCTAGTACCGCTTATCAACCGTGGCTCTGGTCTGCAGGAAATCACGAAGTAGAT 945
Query 975 TACATGCCATACATGGGGGAGGTGACACCTTTCAGGAATTACCTTCAGCGTTACACTACG 1034
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 946 TACATGCCATACATGGGGGAAGTGACACCTTTCAGGAATTACCTTCAGCGTTACACTACG 1005
Query 1035 CCTTACTTAGCCTCAAAAAGTAGCAGTCCTCTTTGGTACGCTGTTAGGCGTGCATCTGCT 1094
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1006 CCTTACTTAGCCTCAAAAAGTAGCAGTCCTCTTTGGTATGCTGTTAGGCGTGCATCTGCT 1065
Query 1095 CATATCATTGTCCTCTCCAGCTATTCGCCTTTTGTGAAGTATACCCCGCAATGGCACTGG 1154
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1066 CATATCATTGTCCTCTCCAGCTATTCGCCTTTTGTGAAATATACCCCGCAATGGCACTGG 1125
Query 1155 CTTAGTGAAGAGCTTACAAGAGTTGATAGGGAGAAAACACCTTGGCTAATTGTTTTGATG 1214
|||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||| |||||
Sbjct 1126 CTTAGTGAAGAGCTTAAAAGAGTTGACAGGGAAAAAACTCCTTGGCTAATTGTTCTGATG 1185
Query 1215 CACGTCCCAATATACAACAGTAATGAAGCACATTTCATGGAGGGTGAAAGCATGCGAGCA 1274
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1186 CACGTCCCAATATACAACAGTAATGAAGCACACTTCATGGAGGGTGAAAGCATGCGAGCA 1245
Query 1275 GCTTTTGAGGAGTGGTTTGTCCAACACAAAGTTGATGTAATCTTTGCTGGGCATGTTCAT 1334
| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 1246 GTTTTTGAGGAGTGGTTTGTCGAACACAAAGTGGATGTAATCTTTGCTGGCCATGTTCAT 1305
Query 1335 GCCTACGAGAGATCGTACCGAATATCAAATGTGCGGTATAACGTGTCAAGCGGAGATCGT 1394
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1306 GCCTACGAGAGATCGTACCGAATATCAAATGTGCGGTATAATGTGTCAAGCGGAGATCGT 1365
Query 1395 TACCCAGTTCCAGATAAGTCAGCGCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAA 1454
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1366 TTCCCAGTTCCAGATAAGTCAGCTCCTGTTTATATCACAGTTGGAGACGGAGGAAATCAA 1425
Query 1455 GAAGGTCTGGCTGGAAGGTTTACGGAACCACAGCCAGATTATTCTGCATTTCGGGAAGCT 1514
|||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 1426 GAAGGTCTTGCTGGAAGGTTTAGGGAACCACAGCCAGATTATTCTGCATATCGAGAAGCT 1485
Query 1515 AGCTATGGCCACTCTACTCTGGATATAAAGAACCGAACACACGCTATATACCACTGGAAC 1574
||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1486 AGCTACGGCCACTCTACTCTGGAGATAAAGAACCGAACACATGCGATATACCACTGGAAC 1545
Query 1575 CGCAATGATGATGGGAAGAAAGTGGCAACGGATGAATTTGTATTACACAACCAGTACTGG 1634
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1546 CGCAATGATGATGGGAAGAAAGTAGCAACGGATGAATTTGTGTTACACAACCAGTACTGG 1605
Query 1635 GGAAAGAACATTCGACGGAGAAAGCTTAAGAAGCATTATATCAGGAGTGTTGT---TGGT 1691
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1606 GGAAAGAACATTCGACGGAGAAAGCTTAAGAAGCATTATATCAAGAGTGTTGTGGCTGGT 1665
Query 1692 GGCTGGATCGCCACTTAATTCACTAAGTCTGCCTCATGCTTTGTATCAAAGTGTGTGAGG 1751
|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1666 GGCTGGATTGCCACTTGATTCACTAAGTCTGCCTCATGCTTTCTATCAAAGTGTGTGAGG 1725
Query 1752 ATATTCTTTTAACTCGGAACTTATTACTTAATTTGATGTTAAATCTCTTTCCCGCTTAAG 1811
||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1726 ATATTCTTTTAACTCAAAACTTATTACTTAATTTGATGTGAAATTTCTTTCCCGCTTAAG 1785
Query 1812 TTTTCAGCAATCTGGAATATGA--A-GGGAATTATGTATTCTTATCAGTCTTTTGATGAA 1868
||||| || ||||| ||||||| | |||||||||||| |||||||| |||||| ||||
Sbjct 1786 TTTTCTGCCATCTGAAATATGATGATGGGAATTATGTACTCTTATCACTCTTTTAATGAT 1845
Query 1869 GTGAGGTCTACTTCTGGGATTATGGATTTGGTGAATAATGTATTCCTTAGAACGGTGTTA 1928
||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||
Sbjct 1846 GTGAGGTCTACTTCTGGGATTTTGGGTTTTGTGAATAATGTATTCCTTATAACGGTGTTA 1905
Query 1929 AGGAATTGTTTCACATGGGTGTGAATTGAGAAGTCCAT 1966
||||| | |||||||||||| |||||||||||||||||
Sbjct 1906 AGGAAATCTTTCACATGGGT-TGAATTGAGAAGTCCAT 1942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76332850980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5