BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G34869.1
Length=1196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933450 jgi|Araly1|933450|scaffold_401438.1 427 8e-119
> Ahg933450 jgi|Araly1|933450|scaffold_401438.1
Length=539
Score = 427 bits (231), Expect = 8e-119
Identities = 450/552 (82%), Gaps = 30/552 (5%)
Strand=Plus/Plus
Query 209 TCTCGAATCTCTGCTCCCGTCATGCTTCAGCTTCATTTTCAACATCTCTATCTCCTCTCT 268
|||| |||||||| | |||||||||||||||||| | | ||||| || |||| ||
Sbjct 1 TCTCCAATCTCTGTTTTCGTCATGCTTCAGCTTCA---GC--C-TCTCTTTCCCCTCCCT 54
Query 269 TCTTATCTGATGGATCTTCTCGGCGAATTTGTTTTCCCAAGCTTCT-TC-TCGCAGAGGT 326
|||| || | |||||||||||||||| |||| || | | || | || ||||||||||
Sbjct 55 TCTTTTCCGGTGGATCTTCTCGGCGAGTTTG-CTT-CTTCGGTTTTCTCATCGCAGAGGT 112
Query 327 TTATATCGGAAGAAGAGTCATCT-AAGTCTATTTGCGCATCATTGGAAAAATCAGA-ACT 384
| | ||||| ||||| || | | || || | ||||| || ||| |||||||||| ||
Sbjct 113 TCAAATCGGGAGAAGTTTCTTTTCAACCCT-TCTGCGCCTCTTTGCAAAAATCAGAGCCT 171
Query 385 TTCTAGCTCTAGATCTGGACCATCACCA-ATGGCACAAACAGTTTGTACTCACCGAATTT 443
|| ||||||||||||||||||||||||| | | | |||||||||| ||||||||| ||||
Sbjct 172 TT-TAGCTCTAGATCTGGACCATCACCACA-GTCTCAAACAGTTTCTACTCACCGGATTT 229
Query 444 CGTTGATGGCAAGAGTATCTCTTGGACCGTCTGTTGCACCTAT-TCCGGTGAGTTCGTCG 502
||||||||||||||| ||||||||||||||| ||||| | | | ||||||||||||||||
Sbjct 230 CGTTGATGGCAAGAGAATCTCTTGGACCGTCAGTTGCGCTT-TGTCCGGTGAGTTCGTCG 288
Query 503 ACGGCGCACGACG-TCTCTCAAAGCTGTCTAGTTGCTCCCC-TTGCT-TTCCTCAGGTCT 559
||||||||||||| | || |||||||||||| ||||| | || | ||| ||||||||
Sbjct 289 ACGGCGCACGACGAT-TCCCAAAGCTGTCTAAAGGCTCCTCATT-CAATTC-TCAGGTCT 345
Query 560 GTGT-CGTTCATCAACTTGCCAAATTCAATTCTAAAGATGTCCTGCTCAATTATGACTGG 618
||| | ||||||| || || |||| |||||||||| | || ||| |||| || |||
Sbjct 346 GTGCAC-TTCATCATCTCATCAGGTTCAGTTCTAAAGATTTACTACTCGATTACGATTGG 404
Query 619 TAGTGGACGCCACGTTAGGGTAGTAGTGATATCTTTAGGCTGGATTTGTCACTATCAATC 678
||| |||| ||| |||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 405 TAGAGGACTCCATGTTAGGGTAGTAGTGACATCTTTAGGCTGGATTTGCCACTGTCAATT 464
Query 679 ACGAAACCTGTTG-AATCTAGAAGTTTTCTTGCTATCCGATGAAAAATT-ATCTTTGAAG 736
||||||||||||| ||| |||||||||| ||||||||||||| || || ||||| ||||
Sbjct 465 ACGAAACCTGTTGGAAT-TAGAAGTTTTGTTGCTATCCGATGCAAT-TTCATCTTAGAAG 522
Query 737 CTTCTTGGATTA 748
||| ||||||||
Sbjct 523 CTTTTTGGATTA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44641935807
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5