BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G34930.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493579 jgi|Araly1|493579|fgenesh2_kg.7__3012__AT5G34930.1 2898 0.0
> Ahg493579 jgi|Araly1|493579|fgenesh2_kg.7__3012__AT5G34930.1
Length=1924
Score = 2898 bits (1569), Expect = 0.0
Identities = 1801/1911 (94%), Gaps = 24/1911 (1%)
Strand=Plus/Plus
Query 78 atgctcccttctctctctctctc-cACCGCC-AACCGCCACC-TC-TCCGTCACCGACAC 133
||| ||||||||||||||||| | | || || |||| ||||| | | ||||||||| |
Sbjct 29 ATGTTCCCTTCTCTCTCTCTC-CGC-CCACCAAACC-CCACCGCCGT-CGTCACCGAAAA 84
Query 134 CATCCCTCTTCCCAACTCCAACTCCAACGCCACCCCTCCTCTCCGTATCGCCATCATCGG 193
|| |||||||||||| ||| | ||| | | ||||||||||||||||||||| |||||
Sbjct 85 CAACCCTCTTCCCAATTCCGA-TCC-A----ATCCCTCCTCTCCGTATCGCCATTATCGG 138
Query 194 ATTCGGAAACTACGGCCAATTCCTTGCCGAAACCCTAATTTCTCAAGGCCACATTCTCTT 253
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 139 ATTCGGCAACTACGGTCAATTCCTCGCCGAAACCCTAATTTCTCAAGGCCACATTCTCTT 198
Query 254 CGCTCACTCCCGATCCGATCACTCCTCCGCCGCTCGCCGTCTCGGTGTCTCATACTTCAC 313
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 199 CGCTCACTCCCGATCCGATCACTCCTCCGCCGCTCGTCGTCTCGGTGTCTCTTACTTCGC 258
Query 314 CGATCTTCACGATCTCTGCGAACGTCATCCTGACGTAGTCCTT-CTCTGTACTTCAATCC 372
||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 259 CGATCTTCACGATCTTTGCGAACGTCATCCTGACGTAGT-CTTACTCTGTACTTCAATCC 317
Query 373 TCTCCATAGAGAATATTCTCAAAACGTTGCCGTTTCAGAGACTCCGTCGCAACACTCTCT 432
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TCTCCATTGAGAATGTTCTCAAAACGTTGCCGTTTCAGAGACTCCGTCGCAACACTCTCT 377
Query 433 TCGTTGATGTTCTCTCCGTTAAAGAGTTTGCTAAAACTCTTCTCCTTCAATACTTACCTG 492
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TCGTTGATGTTCTCTCTGTTAAAGAGTTTGCTAAAACTCTTCTCCTTCAATACTTACCTG 437
Query 493 AAGATTTCGATATTCTTTGTACACATCCAATGTTTGGTCCTCAGAGTGTGAGTTCAAATC 552
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 438 AAGATTTCGATATTCTTTGTACACATCCAATGTTTGGTCCACAGAGTGTGAATTCAAATC 497
Query 553 ATGGCTGGAGAGGATTAAGATTTGTGTATGATAAAGTTAGGATTGGGGAAGAGAGATTGA 612
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 498 ATGGTTGGAGAGGATTAAGATTTGTGTATGATAAAGTTAGGATTGGGGAAGATAGATTGA 557
Query 613 GAGTCTCAAGGTGTGAGAGTTTTCTT-GAGATTTTTGTTAGAGAAGGATGTGAGATGGTG 671
|| ||||||||||||||||||||||| | | |||||| |||||||||||||||||||||
Sbjct 558 GAATCTCAAGGTGTGAGAGTTTTCTTGGTG-TTTTTGAGAGAGAAGGATGTGAGATGGTG 616
Query 672 GAGATGAGTGTTACTGATCATGATAAGTTTGCTGCTGAATCACAGTTTATAACTCATACT 731
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 617 GAGATGAGTGTTACTGATCATGATAAGTTTGCTGCGGAATCGCAGTTTATAACGCATACT 676
Query 732 CTTGGTAGGCTTTTGGGGATGTTGAAGTTG-ATATCGACGCCGATTAATACGAAAGGGTA 790
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 677 CTTGGTAGGCTTTTGGGGATGTTGAAGTTGCA-ATCGACGCCGATTAATACGAAAGGGTA 735
Query 791 CGAGGCGTTGCTTGATTTAGCTGAGAATATTTGTGGGGATAGTTTTGATTTGTATTATGG 850
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 736 TGAGGCGTTGCTTGATTTAGCTGAGAATACTTGTGGGGATAGTTTTGATTTGTATTATGG 795
Query 851 GTTGTTTGTGTATAATAACAACTCTTTGGAGGTGTTAGAGAGGATTGATTTGGCTTTCGA 910
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 796 GTTGTTTGTGTATAATAAGAACTCGTTGGAGGTGTTAGAGAGGATTGATTTGGCTTTCGA 855
Query 911 GGCTTTGCGTAAGGAGCTTTTTAGTCGGCTTCACGGTGTTGTGAGGAAGCAGTCTTTTGA 970
||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 856 GGCATTGCGTAAGGAGCTTTTTAGTCGACTTCATGGTGTTGTGAGGAAGCAGTCGTTTGA 915
Query 971 AGGTGAAGCAAAGAAAGTTCATGTTTTTCCAAATTGTGGTGAAAATGATGCTTCTTTGGA 1030
||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 916 AGGTGAAGCAAAGAAGGTTCATGTTTTTCCAAATGGTTATGAAAATGATGCTTCTTTGGA 975
Query 1031 TATGATGAGGTCAGAAGATGTTGTTGTGAAGTATGAATATAACTCCCAGGTGTCTGGTAG 1090
| ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||
Sbjct 976 TTTGATGAGGTCAGAAGATGTTGCTGTGAAGTATGAATATAACCCCCAGGTCTCTGGCAG 1035
Query 1091 TGTTAATGACGGTTCGAGGCTCAAGATTGGTATCGTCGGGTTTGGAAATTTTGGACAGTT 1150
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1036 TGTTAATGACGGTTCGAGGCTCAAGATTGGTATTGTCGGGTTTGGTAATTTTGGACAGTT 1095
Query 1151 TCTAGGTAAAACCATGGTCAAGCAGGGTCACACTGTGTTAGCTTATTCCAGAAGTGACTA 1210
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1096 TCTAGGAAAAACCATGGTCAAGCAGGGTCACACTGTGTTAGCCTATTCCAGAACTGACTA 1155
Query 1211 CACTGATGAAGCAGCAAAGCTCGGTGTTTCGTATTTTTCAGATCTTGATGATCTATTTGA 1270
|||||||| ||| || ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1156 CACTGATGTAGCTGCGAAGCTGGGTGTCTCGTATTTTTCAGATCTTGATGATCTATTTGA 1215
Query 1271 AGAGCATCCTGAAGTTATTATTCTCTGTACGTCAATCCTTTCGACTGAAAAAGTTCTCGA 1330
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1216 AGAGCATCCTGAAGTTATTCTTCTCTGTACGTCAATCCTTTCGACTGAAAAAGTTCTCAA 1275
Query 1331 GTCACTACCGTTTCAGAGACTGAAGAGAAGCACACTTTTTGTGGATGTACTCTCAGTAAA 1390
||||| || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1276 ATCACTCCCATTTCAGAGACTGAAGAGAAGCACACTTTTTGTGGATGTGCTTTCAGTAAA 1335
Query 1391 AGAGTTCCCGAGGAA-TTTATTTCTTCAAACTCTCCCACAAGATTTTGATATTTTGTGCA 1449
||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 1336 AGAGTTCCCGA-GAAGTTTATTTCTTCAAACTCTACCACAAGATTTCGATATTTTATGCA 1394
Query 1450 CGCATCCTATGTTTGGGCCAGAGAGTGGTAAAAATGGATGGAACAATCTTGCCTTTGTGT 1509
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CACATCCTATGTTTGGACCAGAGAGTGGTAAAAATGGATGGAACAATCTTGCCTTTGTGT 1454
Query 1510 TTGATAAGGTTAGGATTGGAATGGATGATAGAAGAAAATCGAGGTGTAACAGTTTTCTTG 1569
||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 1455 TTGATAAGGTTAGGATTGGAATGGATGATAGAAAAAAATTGAGGTGTGACAGTTTTCTTG 1514
Query 1570 ATATTTTTGCCCGTGAAGGATGTCGTATGGTGGAGATGTCGTGTGCTGAACATGATTGGC 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 ATATTTTTGCCCGTGAAGGATGTCGTATGGTGGAGATGTCGTGTGCTGAACATGATTGGC 1574
Query 1630 ATGCTGCTGGATCACAGTTTATCACACACACAGTGGGAAGGCTTCTGGAGAAGCTGAGCT 1689
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1575 ATGCTGCTGGATCACAGTTTATCACACACTCAGTGGGAAGGCTTCTGGAGAAGCTGAGCT 1634
Query 1690 TGGAATCTACTCCTATAGATACCAAAGGTTATGAGACATTGCTAAAACTGGTGGAGAATA 1749
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1635 TGGAATCTACTCCTATCGATACCAAAGGTTATGAGACATTGCTAAAATTAGTGGAGAATA 1694
Query 1750 CTGCTGGTGACAGCTTTGATCTGTACTATGGACTATTTTTATACAATCCTAATGCAATGG 1809
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1695 CTGCTGGTGACAGCTTTGATCTTTACTATGGACTATTTTTATACAATCCTAATGCAATGG 1754
Query 1810 AACAGCTTGAGAGGTTTCATGTGGCTTTTGAATCATTGAAGACACAGCTCTTTGGACGAC 1869
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||
Sbjct 1755 AACAGCTTGAGAGGTTTCATGTGGCTTTTGAGTCATTGAAGAAACAGCTCTTTGGAAGAC 1814
Query 1870 TACATTCTCAACATTCTCATGAGCTAGCTAAATCATCTTCCCCAAAGACAACTAAGCTAT 1929
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1815 TACATTCACAACATTCTCATGAGCTAGCTAAATCATCTTCGCCAAAGACAACTAAGCTAT 1874
Query 1930 TAACTAGCTAAAGTTA-ATATTCTCTCAGTCATGCTCCTTGACTACTAATT 1979
|||||||||||||||| | ||||||||||| |||||||||| ||||||||
Sbjct 1875 TAACTAGCTAAAGTTAGAG-TTCTCTCAGTCTTGCTCCTTGATTACTAATT 1924
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 TCCAAAAGTCTATTCAAATGGCAGAGACA 29
|||||||||||||||||||||||||||||
Sbjct 1 TCCAAAAGTCTATTCAAATGGCAGAGACA 29
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5