BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35080.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493583 jgi|Araly1|493583|fgenesh2_kg.7__3016__AT5G35080.1 1410 0.0
> Ahg493583 jgi|Araly1|493583|fgenesh2_kg.7__3016__AT5G35080.1
Length=949
Score = 1410 bits (763), Expect = 0.0
Identities = 892/954 (94%), Gaps = 10/954 (1%)
Strand=Plus/Plus
Query 11 CTCATCGTCTACATCGCCGTCGCCTGTTACCGTCCGGTGCTATTCTCCTTCACAATCTCA 70
|||||||||||| ||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 3 CTCATCGTCTACCTCGCCGTCGCCTGTTACCGCCCGGTGC---TC-GCTTCACAATCTCA 58
Query 71 CATTTTTCGTACCGGTTA-GAAGATGAGAATCACGCAGATCTTGTTATGTCTGGTAATAG 129
|||||| | |||| || |||||||||||||||| |||||||||| |||||||||||||
Sbjct 59 GTTTTTTCTTGCCGG-TATGAAGATGAGAATCACGGAGATCTTGTTGTGTCTGGTAATAG 117
Query 130 TGGCATTGT-CTTCAAGCTCCCATGTCTGGTCCGATCAGATCTTCCCAGCTCATCTAGTT 188
| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 TTGCATTGTGC-TCAAGCTCCCATGTCTGGTCGGATCAGATCTTCCCAGCTCATCTAGTT 176
Query 189 GGAACATTCAGCAGAAACAATCGTGAACCAAAGTACAAGATTGAGTTCCTTCCTGAAGAT 248
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 177 GGAACATTCAGCAGAAACAATCGTGAACCAAAGTACAAGATTGAGTTTCTCCCTGAAGAT 236
Query 249 TCACCTTTTCACCCGGGTGATAATCTGGAATCAATGGTTATGTTGGATAAGCATGGAAAT 308
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 237 TCACCTTTTCACCCGGGTGATAATCTGGAATCTATGGTTATGTTGGATAAGCATGGGAAT 296
Query 309 CGGTTTTTATGTTACTTACCGAAAGAGGAAAAAGCGACGAGTGGATGGACTTCTAGTCAG 368
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 297 CGATTTTTATGTTACTTACCGAAAGAGGAAAAACCAACGAGTGGATGGACTTCTAGTCAG 356
Query 369 CAAAATATTAGTACTGTGATGATGGAAACACAGCAACTGGTGAAGCTAAAGACTCCTGAT 428
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 357 CAAAATATTAGTACTGTGATGATGGAAACACAGAAACAGGTGAAGCTAAAGACTCCTGAT 416
Query 429 GAATTGCTTCAACCACTTAGTGAAAAATGTCTTTTTAGGCAAGAGGGTTGGTGGTCTTAT 488
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 GAATTGCTTCAACCACTTGGTGAAAAATGTCTTTTTAGGCAAGAAGGTTGGTGGTCTTAT 476
Query 489 GAGTTTTGTCATCAGAAGTATGTGCGGCAGCTACACGTTGAGGATGAAAACAAGATTGTT 548
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 477 GAGTTTTGTCATCAGAAGTTTGTACGGCAGCTACACGTTGAGGATGAAAACAAGATTGTA 536
Query 549 CAAGAGttttttttGGGTACTTTTGACCCAGAGGCAACTGCGGCGTTTAATCAAACTGTT 608
||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 537 CAAGAGTTTTTCTTAGGTACGTTTGACCCAGAGGCAACTGCAGCGTTTAATCAAACAGTA 596
Query 609 TCTGATGCTTCAACTGATGCATCTCAG-AGGTATCACTCTCATGTATACACCAATGGGAC 667
|||||| ||| |||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 597 TCTGATATTTCGACTGATGCTTCT-GGCAGGTATCACTCTCATGTATACACCAATGGGAC 655
Query 668 CACCTGTGATCTTACAGGATCACCTCGCGAAGTCGAGGTGAGGTTTGTATGCGCAGAAAC 727
|||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||
Sbjct 656 CACCTGTGATCTTACAGGGTCACCTCGAGAAGTCGAGGTGAGGTTTGTCTGTGCAGAAAC 715
Query 728 AAGGGCAATGGTCACTTCAATCACTGAATTATCAACTTGCAAGTACGCACTGACTGTTCA 787
||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct 716 CAGGGCAATGGTCACTTCGATCACTGAGCTATCCACTTGCAAGTACGCACTGACTGTTCA 775
Query 788 GTGCCCAACCTTGTGCAAGCATCCGCTGTTCCAGCTAGAGAAACCAGTGTCACACACGAT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GTGCCCAACCTTGTGCAAGCATCCGCTGTTCCAGCTAGAGAAACCAGTGTCACACACGAT 835
Query 848 CCACTGCAATGCGATCCCAGTGGAAGAAGACGCAACAAGAAACAAGGAAGAACAAGCAGT 907
||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||
Sbjct 836 CCACTGCAATGCGATCCCAGTGGAACAAGACGCAACAAGAAGCAATGAAGAACAAATAGT 895
Query 908 AGACGAATCACCTAAGATGATAGCTGATTCTTGAAAACCGCCTAAGTGAATCAC 961
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 896 AGGCGAATCACCTAAGATGATAGCTGATTCTTGAAAACTGCCTAAGTGAATCAC 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5