BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G35090.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493584 jgi|Araly1|493584|fgenesh2_kg.7__3017__AT5G35090.1         649    0.0  


> Ahg493584 jgi|Araly1|493584|fgenesh2_kg.7__3017__AT5G35090.1
Length=521

 Score =  649 bits (351),  Expect = 0.0
 Identities = 463/513 (90%), Gaps = 24/513 (5%)
 Strand=Plus/Plus

Query  118  aaaaaaTGGGAAGCGAAACAATGA-CCAACTTGTCTCTACAA-AAGAAACTCAAATCAAG  175
            ||| ||||||||||||| |||||| || ||||||||||| || || ||||||||||||||
Sbjct  1    AAAGAATGGGAAGCGAATCAATGAGCC-ACTTGTCTCTA-AAGAAAAAACTCAAATCAAG  58

Query  176  GTTTTGCATCGCCGGATGTTTTCGTACGACCAATCATCACCACCACGACAACATTCCCGA  235
            ||||||||||||||||||||||||||||||| |  ||||||| | | ||||||| |||||
Sbjct  59   GTTTTGCATCGCCGGATGTTTTCGTACGACC-A--ATCACCA-C-C-ACAACATCCCCGA  112

Query  236  CGACCTACCATCATCCCCG--G--T-----CACCACCGAGAAATCTACACAAAGCCCACA  286
            |||||| ||||||||||||  |  |     ||||||||||||||||||||||||||||||
Sbjct  113  CGACCTGCCATCATCCCCGATGACTCCGGCCACCACCGAGAAATCTACACAAAGCCCACA  172

Query  287  TGGTGGTGGAATGAAGACCAAATCTCCAAGACTCACTAGGACGTTGTCCAAGTCACATGA  346
            |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  173  TGGTGGTGAAATTAAGACCAAATCACCAAGACTCACTAGGACGTTGTCCAAGTCACATGA  232

Query  347  AAAATGTAAGAGTCTGATCCATCGAATGGGCGGTGGAG-TAGGTGGCGTTGGCGGTCACG  405
            ||| || ||||||||||||||||||||||||||||| | ||   ||||||||||| ||||
Sbjct  233  AAAGTGCAAGAGTCTGATCCATCGAATGGGCGGTGGGGTTA-CCGGCGTTGGCGGCCACG  291

Query  406  GGAAGCATATTCGCCGCCATACTGCTGACTTTCATTACGATCCGTCGAGCTATGCGCTTA  465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  GGAAGCATATTCGCCGCCATACTGCTGACTTTCATTACGATCCGTCGAGCTATGCGCTTA  351

Query  466  ACTTTGATAAAGGAGATGAGGATGACAATATCGACCGTTTTCCGCTACGTAACTTCTCCG  525
            |||||||||||||||| ||||| || ||||||||||| |||||||| || ||||||||||
Sbjct  352  ACTTTGATAAAGGAGACGAGGACGAAAATATCGACCGCTTTCCGCTCCGCAACTTCTCCG  411

Query  526  CTAGGCTGCCTCATTCACCGCCTTCTTCGGCCAAGGC--CG-CGGATTCTTCGTATACGG  582
            |||||||||||| ||| ||||||||||||||||||||  || |||| |||||||||||||
Sbjct  412  CTAGGCTGCCTCGTTCGCCGCCTTCTTCGGCCAAGGCTGCGACGGAGTCTTCGTATACGG  471

Query  583  TTCAAAACCTTTTGCGGTAAAGAATGAATCACA  615
            |||||||||||||||| ||| || |||||||||
Sbjct  472  TTCAAAACCTTTTGCGTTAATGATTGAATCACA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5