BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35100.1
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493585 jgi|Araly1|493585|fgenesh2_kg.7__3018__AT5G35100.1 1511 0.0
> Ahg493585 jgi|Araly1|493585|fgenesh2_kg.7__3018__AT5G35100.1
Length=1047
Score = 1511 bits (818), Expect = 0.0
Identities = 977/1051 (93%), Gaps = 21/1051 (2%)
Strand=Plus/Plus
Query 1 TCATCATCCAACATGGCATCATCATCAATCCTCATCCCTCCGATTCTCACCCGTCGTAAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCATCATCCAACATGGCATCATCATCAATCCTCATCCCTCCAATTCTCACCCGTCGTAAT 60
Query 61 CTCCTCCTCTCCACCACAATCGCCACCGTAACTCCACCACCACCAGCTAAACCACCTTCC 120
||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 61 CTCCTCCTCTCCACCACCATCGCCACCGTATCTCCACCACCACCTCCTAAACCACCTTCC 120
Query 121 CCCGACATCACAATAACCGATCGAGTCTTCCTCGACTTCTCCCTCTGCCCCACCTACTTC 180
|| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCTGACATCACAATCACCGATCGCGTCTTCCTCGACTTCTCCCTCTGTCCCACCTACTTC 180
Query 181 CGCTCAGATCCCTCCGCGACACTCTCCTCCACCACACCTTGCTCCGATTCAACTCCTCTC 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGCTCAGATCCCTCCGCCACACTCTCCTCCACCACACCTTGCTCCGATTCAACTCCTCTC 240
Query 241 GGCCGCGTCGTTCTCGGATTATACGGCCGTCACGTTCCCATAACCGTCTCAACTTTCAAA 300
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 241 GGCCGCGTCGTTCTCGGATTATACGGCCGTCACGTTCCCATCACTGTTTCAACTTTCAAA 300
Query 301 CGTATGTGTACTTCATCTTCCACATCTTACAAAAACACACCTGTCCACAAAATCTTCCCT 360
|||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 301 CGTATGTGTACTTCTTCTTCTACTTCTTACAAAAACACTCCTGTCCACAAAATCTTCCCT 360
Query 361 GGTCAGTATTTTCTCGCCGGAAGACAAGGAGGAGGACGGCGAGATACGGCGGAGGTTGGT 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GGTCAGTATTTTCTCGCCGGAAGACAAGGAGGAGGACGACGAGATACGGCGGAGGTTGGA 420
Query 421 TATTCACTCAGAGACTTACCTCGTAACACCGACGTTGTTAATTCCAAAGCTTTTTTACTT 480
|||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||| |||
Sbjct 421 TATTCACTTAGAGATTTGCCTCGGAACACTGACGTTGTTAATTCTAAAGCTTTTTTGCTT 480
Query 481 CCTCATGCTCGTGCTGGTGTTGTTTCTCTTTGTTTATCTGAGAatgatgatgatgatgat 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTCATGCTCGTGCTGGTGTTGTTTCTCTTTGTTTATCTGAGAATGATGATGATGATGAC 540
Query 541 ATTAGACTCGATCCTGATTATAGAAATGTTGAATTCTTAATCACTACTGGTCCTGGACCG 600
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 ACTAGACTCGATCCTGATTATAGAAATGTTGAATTCTTAATCACTACCGGTCCTGGACCG 600
Query 601 TCTCCGCAGCTCGATGGCGGTAACATTGTATTCGGAACTGTTCTTGAAGGATTAGATGTA 660
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTCCGCAGCTCGATGGCGGTAACATTGTATTCGGAACTGTTCTTGAAGGATTAGATGTG 660
Query 661 GTGACGAGTATTTCTTCGATTCCGACGTATAAGCCGTCGGAGAATATTAAACAGTTTAAC 720
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GTGACCAGTATATCTTCGATTCCCACGTATAAGCCGTCGGAGAATATTAAACAGTTTAAC 720
Query 721 GATTTTGCGGAGTTTCTTGGAGACGAGAGAGCTCAAAACGCGAGATCTTTGTGGAATAGA 780
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 721 GATTTTGCGGAGTTTCTTGGGGATGAGAGAGCTCAAAACGCTAGATCTTTGTGGAATAGA 780
Query 781 CCTTTGAAGACGGTTTTCATTAGTGGCTGTGGAGAGCTTAAGGTCACTAATCCTTCACTC 840
||| | ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 781 CCTCTCAAGACAATTTACATTAGTGGCTGTGGAGAGCTCAAGGTCACTAATCCTTCACTT 840
Query 841 TCTCCAACTTTGCCTTAATTATCGTATCTTCGtatatatatatatGTGT------GTG-- 892
||||||||| ||||||||||||| ||| ||||||||||||||||| | | |||
Sbjct 841 TCTCCAACTCTGCCTTAATTATCTTATATTCGTATATATATATATATATATATATGTGCG 900
Query 893 TGTCAAATCT-TGTTTATAATCATGCTT--C--T---GCTTCTTCTACTATATGAAAATG 944
|||||||| | ||||||||||||| || | | ||||||||||||||||||||||
Sbjct 901 TGTCAAAT-TGTGTTTATAATCATTATTTACAATCCTGCTTCTTCTACTATATGAAAATC 959
Query 945 AAATTGTAATTTAATCCTACTCTGGTGGTTGCTAAAGATTA-GTATAGAGAAGAGCTTAT 1003
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 960 AAATTGTAATTTAATCCTACTCTGGTGGTTGCTAAAGATTAAG-ATAGAGAAGAGCTTAT 1018
Query 1004 ATAATCATAACATTGAGGTTGTTGTTGTTTG 1034
| | ||| |||||||||||||||||||||||
Sbjct 1019 A-A-TCAAAACATTGAGGTTGTTGTTGTTTG 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38466023253
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5