BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35100.1 Length=1034 Score E Sequences producing significant alignments: (Bits) Value Ahg493585 jgi|Araly1|493585|fgenesh2_kg.7__3018__AT5G35100.1 1511 0.0 > Ahg493585 jgi|Araly1|493585|fgenesh2_kg.7__3018__AT5G35100.1 Length=1047 Score = 1511 bits (818), Expect = 0.0 Identities = 977/1051 (93%), Gaps = 21/1051 (2%) Strand=Plus/Plus Query 1 TCATCATCCAACATGGCATCATCATCAATCCTCATCCCTCCGATTCTCACCCGTCGTAAT 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 TCATCATCCAACATGGCATCATCATCAATCCTCATCCCTCCAATTCTCACCCGTCGTAAT 60 Query 61 CTCCTCCTCTCCACCACAATCGCCACCGTAACTCCACCACCACCAGCTAAACCACCTTCC 120 ||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||| Sbjct 61 CTCCTCCTCTCCACCACCATCGCCACCGTATCTCCACCACCACCTCCTAAACCACCTTCC 120 Query 121 CCCGACATCACAATAACCGATCGAGTCTTCCTCGACTTCTCCCTCTGCCCCACCTACTTC 180 || ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 121 CCTGACATCACAATCACCGATCGCGTCTTCCTCGACTTCTCCCTCTGTCCCACCTACTTC 180 Query 181 CGCTCAGATCCCTCCGCGACACTCTCCTCCACCACACCTTGCTCCGATTCAACTCCTCTC 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGCTCAGATCCCTCCGCCACACTCTCCTCCACCACACCTTGCTCCGATTCAACTCCTCTC 240 Query 241 GGCCGCGTCGTTCTCGGATTATACGGCCGTCACGTTCCCATAACCGTCTCAACTTTCAAA 300 ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| Sbjct 241 GGCCGCGTCGTTCTCGGATTATACGGCCGTCACGTTCCCATCACTGTTTCAACTTTCAAA 300 Query 301 CGTATGTGTACTTCATCTTCCACATCTTACAAAAACACACCTGTCCACAAAATCTTCCCT 360 |||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||| Sbjct 301 CGTATGTGTACTTCTTCTTCTACTTCTTACAAAAACACTCCTGTCCACAAAATCTTCCCT 360 Query 361 GGTCAGTATTTTCTCGCCGGAAGACAAGGAGGAGGACGGCGAGATACGGCGGAGGTTGGT 420 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 GGTCAGTATTTTCTCGCCGGAAGACAAGGAGGAGGACGACGAGATACGGCGGAGGTTGGA 420 Query 421 TATTCACTCAGAGACTTACCTCGTAACACCGACGTTGTTAATTCCAAAGCTTTTTTACTT 480 |||||||| ||||| || ||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct 421 TATTCACTTAGAGATTTGCCTCGGAACACTGACGTTGTTAATTCTAAAGCTTTTTTGCTT 480 Query 481 CCTCATGCTCGTGCTGGTGTTGTTTCTCTTTGTTTATCTGAGAatgatgatgatgatgat 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CCTCATGCTCGTGCTGGTGTTGTTTCTCTTTGTTTATCTGAGAATGATGATGATGATGAC 540 Query 541 ATTAGACTCGATCCTGATTATAGAAATGTTGAATTCTTAATCACTACTGGTCCTGGACCG 600 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 541 ACTAGACTCGATCCTGATTATAGAAATGTTGAATTCTTAATCACTACCGGTCCTGGACCG 600 Query 601 TCTCCGCAGCTCGATGGCGGTAACATTGTATTCGGAACTGTTCTTGAAGGATTAGATGTA 660 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGTCCGCAGCTCGATGGCGGTAACATTGTATTCGGAACTGTTCTTGAAGGATTAGATGTG 660 Query 661 GTGACGAGTATTTCTTCGATTCCGACGTATAAGCCGTCGGAGAATATTAAACAGTTTAAC 720 ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 661 GTGACCAGTATATCTTCGATTCCCACGTATAAGCCGTCGGAGAATATTAAACAGTTTAAC 720 Query 721 GATTTTGCGGAGTTTCTTGGAGACGAGAGAGCTCAAAACGCGAGATCTTTGTGGAATAGA 780 |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| Sbjct 721 GATTTTGCGGAGTTTCTTGGGGATGAGAGAGCTCAAAACGCTAGATCTTTGTGGAATAGA 780 Query 781 CCTTTGAAGACGGTTTTCATTAGTGGCTGTGGAGAGCTTAAGGTCACTAATCCTTCACTC 840 ||| | ||||| ||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 781 CCTCTCAAGACAATTTACATTAGTGGCTGTGGAGAGCTCAAGGTCACTAATCCTTCACTT 840 Query 841 TCTCCAACTTTGCCTTAATTATCGTATCTTCGtatatatatatatGTGT------GTG-- 892 ||||||||| ||||||||||||| ||| ||||||||||||||||| | | ||| Sbjct 841 TCTCCAACTCTGCCTTAATTATCTTATATTCGTATATATATATATATATATATATGTGCG 900 Query 893 TGTCAAATCT-TGTTTATAATCATGCTT--C--T---GCTTCTTCTACTATATGAAAATG 944 |||||||| | ||||||||||||| || | | |||||||||||||||||||||| Sbjct 901 TGTCAAAT-TGTGTTTATAATCATTATTTACAATCCTGCTTCTTCTACTATATGAAAATC 959 Query 945 AAATTGTAATTTAATCCTACTCTGGTGGTTGCTAAAGATTA-GTATAGAGAAGAGCTTAT 1003 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 960 AAATTGTAATTTAATCCTACTCTGGTGGTTGCTAAAGATTAAG-ATAGAGAAGAGCTTAT 1018 Query 1004 ATAATCATAACATTGAGGTTGTTGTTGTTTG 1034 | | ||| ||||||||||||||||||||||| Sbjct 1019 A-A-TCAAAACATTGAGGTTGTTGTTGTTTG 1047 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38466023253 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5