BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G35110.1

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947157 jgi|Araly1|947157|scaffold_703386.1                        560    2e-159


> Ahg947157 jgi|Araly1|947157|scaffold_703386.1
Length=379

 Score =  560 bits (303),  Expect = 2e-159
 Identities = 328/340 (96%), Gaps = 2/340 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTGCCGGATCCATGGACGGAATATTCCGCAACATCTTT-GAAGGTTGCATCTCTAG  59
            |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct  21   ATGGCTGCCGGATCCATGGACGGAATATTCCGCAACAT-TTTCGAAGGTTGCATCTCTAG  79

Query  60   CTGTGACTCTTCCATCCAACGACGTCCATACCACAAGAACTGCGGTTGTGCCCTTCACGA  119
            ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  80   CTGCGACTCTTCCATCCAACGACGTCCATACCACAAGAACTGCGGTTGCGCGCTTCACGA  139

Query  120  GAGATCTCGCGGTGGAGGTTCAGCGACTCCTTGTCGTCATGGAAGGTCTGAGGTCGTTAT  179
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct  140  GAGATCTCGCGGTGGAGGTTCAGCGACCCCTTGTCGTCATGGAAGGTCTGAGGTCATTAT  199

Query  180  GTTCCCTATCCAACGATCTTGGAGTGAAGGAAACAGTTTGGCTCTGCATCTTGCCTCATC  239
            | |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  GCTCCCAATCCAACGGTCTTGGAGTGAAGGAAACAGTTTGGCTCTGCATCTTGCCTCATC  259

Query  240  TTCTTCTTCCTCTAACCTCCAGTCACTTTCGTCGTCTTCGTCTATTTCTACCCTTGCATC  299
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct  260  TTCTTCTTCCTCTAACCTCCAGTCAATTTCGTCGTCTTCGTCTATTTCTACCCTCGCATC  319

Query  300  GTTATCTTCGACCGTGTCTGATATTGATTCTCCCATTTAA  339
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  320  GTTATCTTCGACCGTGTCTGATATTGATTCTCCCATTTAA  359



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12019010535


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5