BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35180.4
Length=2787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330172 jgi|Araly1|330172|fgenesh1_pm.C_scaffold_7002399 2001 0.0
> Ahg330172 jgi|Araly1|330172|fgenesh1_pm.C_scaffold_7002399
Length=2319
Score = 2001 bits (1083), Expect = 0.0
Identities = 1160/1198 (97%), Gaps = 2/1198 (0%)
Strand=Plus/Plus
Query 1355 CATCAACTTGGGAAATCAAAAGCTTAAAAAAGCGCAGCGATGCAGAAACTCCAAGTTGTC 1414
|||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1118 CATCCACTTGGGAAATCAGAAGCTTGAAAAAGCGCAGCGATGCAGAAACTCCAAGTTGTC 1177
Query 1415 TTGTAACACACATGCTAGAAATCCACTCTAAACGTTGGTGCAAATGGAAGAGGACCAGCT 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1178 TTGTAACACACATGCTAGAAATCCACTCTAAACGTTGGTGCAAATGGAAGAGGACTAGCT 1237
Query 1475 ACTCAAAGTTTGAAAAGACTATTCCATATGCATTACTCCTCCAAGTAGCAGGTCTGAAGG 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 ACTCAAAGTTTGAAAAGACTATTCCATATGCATTACTCCTCCAAGTAGCAGGTCTGAAGG 1297
Query 1535 AGTACATTGGAGCAAACCCAGCCTTCAAGTATGAAACTTCCGCCACGGTTGTCCAGTCCA 1594
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1298 AGTACATTGGAGCAAACCCAGCCTTCAAGTATGAAACTTTCGCTACGGTTGTCCAGTCCA 1357
Query 1595 AGTTCCAAGATGTCCCCAATGGTGAATATGTAGATGAAGAAATGGAGGAGCAGTTTTATG 1654
|||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGTTCCCAGATATCCCTAATGGTGAATATGTAGATGAAGAAATGGAGGAGCAGTTTTATG 1417
Query 1655 ATGCCACGGACTCATCATCTGGA-GAAGAGGATGAGGAGGAAAGCGATGACGATGATGAA 1713
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1418 ATGCCACGGACTCATCATCT-GATGAAGAGGATGAGGAGGAAAGCGATGAAGATGATGAA 1476
Query 1714 AATCAGGACAATAAGGAGATAAAAGTTAAACTGAAGAATGTTTCATGGGCAATCGCTAGC 1773
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GATCAGGACAATAAGGAGATTAAAGTTAAACTGAAGAATGTTTCATGGGCAATCGCTAGC 1536
Query 1774 TTATCTTTGAAGCGACCTAAAGCTCCAGGCGCAAGTAATGTATTAGACGCTAGTGTTGAT 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 TTATCTTTGAAGCGACCTAAAGCTCCAGGCGCAAGTAATGTATTAGACGCTAGTGTTGAT 1596
Query 1834 CCTGTGAGTATCGATCCAAGTCAGTTCCAAGGATCTCTGCGCAAAGGAAATGGTGATAAG 1893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 CCTGTGAGTATCGATCCAAGTCAGTTCCAAGGATCTCTGCGCAAAGGAAATGGTGATAAA 1656
Query 1894 GACTCAAATTGCTGGAATTCTCCTAGTGGCATGGGGTTTATGATCAGGGGAAAGACCTAC 1953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 GACTCAAATTGCTGGAATTCTCCTAGTGGCATGGGGTTTATGATCAGGGGAAAGACCTAC 1716
Query 1954 CTAAAAGATAATGCAAAGGTGATGGGTGGGCAGCCCCTTCTAACACTTATATCAGTGGAT 2013
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1717 CTAAAAGATAATGCAAAGGTGATGGGTGGGGAGCCCCTTCTAACACTTGTATCAGTGGAT 1776
Query 2014 TGGTTCAAAGTTGATAGTGCTGTAGACAACATCGCCCTGCATCCAAAATGTCTTATCCAG 2073
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1777 TGGTTCAAAGTTGATAAAGCTGTAGATAACATCGCCCTGCATCCAAAATGTCTTGTCCAG 1836
Query 2074 TCGGAACCTGGGAAAAAGCTCCCATTCATCCTAGTCATCAATCTACAGGTACCAGCAAAG 2133
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1837 TCGGAACCTGGGAAAAAGCTGCCATTCATCCTAGTCATCAATCTTCAGGTACCAGCAAAG 1896
Query 2134 CCTAACTATTGTCTGGTACTCTACTATGCTGCGGATCGACCTGTAAACAAGACTTCATCC 2193
|||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||
Sbjct 1897 CCTAACTATTGTCTGGTACTCTACTATGCTTCGGATCGTCCTGTAAGCAAGTCTTCATCC 1956
Query 2194 CTGGGAAAATTCGTGGATGGGAGTGACAGTTACCGCGACGCAAGATTTAAGCTAATTCCA 2253
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1957 CTGGGAAAATTTGTGGATGGGAGTGACAGTTACCGCGACGCAAGATTTAAGCTGATCCCA 2016
Query 2254 AGTATTGTTCAGGGATATTGGATGGTCAAGCGGGCTGTTGGAACAAAAGCCTGCTTGCTC 2313
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2017 AGTATTGTTCAGGGATATTGGATGGTCAAGCGGGCTGTTGGAACTAAAGCCTGCCTGCTC 2076
Query 2314 GGTAAAGCTGTGACCTGTAAGTACCTGAGGCAGGATAACTTTTTGGAGATTGATGTAGAT 2373
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2077 GGTAAAGCTGTAACCTGCAAGTACCTGAGGCAGGATAATTTTTTGGAGATTGATGTAGAT 2136
Query 2374 ATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGC 2433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 ATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGC 2196
Query 2434 CTCATTGTTGATCTCGCCATCTTGATTGAGGGAAAGGAGGAAAGCGATTTGCCCGAGTAT 2493
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2197 CTCATTGTTGATCTCGCCATCTTGATTGAGGGAAAGGAGGAAACCGATTTGCCAGAGTAT 2256
Query 2494 ATCCTTGGGACAGTTCGACTTAACCGAATAGAGCTGGACTCAGCCGTATCATTTGAGG 2551
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2257 ATCCTTGGGACGGTTCGACTTAACCGAATAGAGCTGGACTCAGCCGTATCATTTGAGG 2314
Score = 1099 bits (595), Expect = 0.0
Identities = 712/766 (93%), Gaps = 18/766 (2%)
Strand=Plus/Plus
Query 121 ATGACATCGCCTGGATCGAAGAAAGTTGTTACCACCGACGACGGATCGGAGAAGAAAGTT 180
|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 1 ATGACATCGCCTGGATCGAAGAAACTTGTTACC-TC--CGACGGATCGGAGAAGAAAGTT 57
Query 181 TCCGGCAATCTCGGAAAAGTAAGTTTTTCCGGAGATCTTAATCATAGTGGAAGCCATAGT 240
||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | |||
Sbjct 58 TCCGGTAATCTCGGAAAAGTTAGTTTTTCCGGAGATCTTAATGATAGTGGAAG-C--AGT 114
Query 241 GGAAGCCATAGTCGTAGCAGCAGCAGCGCCGGAGGTGGTGAAGGAGGAACGTTTGAGTAT 300
|| | |||||||||||| | | ||| || || |||||||||||||||||||||
Sbjct 115 ---AG-C-----CGTAGCAGCAGC-G-G-CGGCGGCGGAGAAGGAGGAACGTTTGAGTAT 162
Query 301 TTCGGATGGGTTTATCATTTGGGTGTGAATAAGATCGGTCATGAGTACTGTAATCTTCGT 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 TTTGGATGGGTTTATCATTTGGGTGTGAATAAGATCGGTCATGAGTACTGTAATCTTCGT 222
Query 361 TTCCTTTTCATTAGAGGCAAATATGTTGAGATGTATAAAAGAGATCCTCATGAGAACCCA 420
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 223 TTTCTTTTCATTAGAGGCAAATATGTTGAGATGTATAAAAGAGATCCTCGCGAGAACCCA 282
Query 421 GACATTAAACCTATAAGGCGTGGTGTCATAGGGCCGACAATGGTGATTGAAGAGCTAGGA 480
||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 283 GACATTAAACCTATAAGGCGTGGTGTCATAGGGCCTACAATGATGATTGAAGAGTTAGGA 342
Query 481 CGTCGAAAAGTTAATCATGGGGATGTCTACGTTATAAGGTTCTATAACCGGTTGGACGAG 540
||||| ||||| |||| |||||||||||| || |||||||||||||||||||||||||||
Sbjct 343 CGTCGCAAAGTGAATCGTGGGGATGTCTATGTCATAAGGTTCTATAACCGGTTGGACGAG 402
Query 541 TCAAGGAAAGGAGAAATTGCTTGTGCTACTGCTGGAGAAGCCCTGAAATGGGTTGAGGCT 600
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 403 TCAAGAAAAGGAGAAATTGCTTGTGCTACCGCTGGAGAAGCCGTGAAATGGGTTGAGGCT 462
Query 601 TTTGAGGAAGCAAAGCAGCAGGCTGAATATGCACTATCGAGAGGCGGAAGTACAAGAACA 660
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 463 TTTGAGGAAGCAAAGCAGCAGGCTGAATATGCACTTTCGAGAGGTGGAAGCACAAGAACA 522
Query 661 AAGTTAAGCATGGAGGCCAACATCGATCTGGAAGGACATCGGCCTAGAGTACGGCGTTAT 720
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 523 AAGCTAAGCATGGAGGCCAACATCGATCTGGAAGGACATCGACCTAGAGTACGACGTTAT 582
Query 721 GCTTATGGATTAAAAAAGCTTATCCGAATTGGGCAAGGTCCAGAGTCTCTTTTGAGGCAA 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 GCTTATGGATTAAAAAAGCTTATCCGAATTGGGCAAGGTCCAGAGACTCTTTTGAGGCAA 642
Query 781 TCATCTACCCTGGTTAATGATGTCAGGGGTGATGGTTTCTATGAGGGTGGTGACAATGGA 840
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 643 TCCTCTACCTTGGTTAATGATGTTAGGGGTGATGGTTTCTATGAGGGTGGTGACAACGGA 702
Query 841 GATGCAATCGAGGCACACGAATGGAAATGTGTTCGTACAATCAATG 886
||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 703 GATGCAATCGAGGCACATGAATGGAAGTGTGTTCGTACAATCAATG 748
Score = 590 bits (319), Expect = 2e-167
Identities = 353/370 (95%), Gaps = 0/370 (0%)
Strand=Plus/Plus
Query 926 GTGTTAGGATTTTTGAAGATGTTGCTAACTTCAAGGCTGGTCGAGGAGTTCTTGTGAAAG 985
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 749 GTGTTAGGATTTTTGAAGATGTGGCTAACTTCAAGGCTGGTCGAGGAGTTCTTGTGAAAG 808
Query 986 CCGTTGCTGTAGTTGAAGCAAGTGCGGATACCGTGTTCGAAGTACTTTTGAACATTGACA 1045
| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 809 CAGTTGCTGTAGTTGAAGCTAGTGCGGATACTGTGTTCGAAGTGCTTTTGAGCATTGACA 868
Query 1046 AACATCAAAGATACGAGTGGGATGCAGTAACAGGTGATTCGGAAAAGATAGACTCATACG 1105
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 869 AACATCAAAGATACGAGTGGGATGCAGTAACAGGTGATTCGGAAAAGATAGACTCATATG 928
Query 1106 AGGGTCACTATGATGTCATTTATTGCATATACGATCCTAAATATCTTTCGCGATGGCAGT 1165
|||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
Sbjct 929 AGGGCCACTATGATGTCATTTACTGCGTATACGATCCTAAATATCTTTCACGATGGCAAT 988
Query 1166 CAAAGAGAGATTTTGTGTTCTCTAGACAGTGGGTTCGTGGGCAAGATGGGACATATACAA 1225
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CGAAGAGAGATTTTGTCTTCTCTAGACAGTGGGTTCGTGGGCAAGATGGGACATATACAA 1048
Query 1226 TCTTACAGTTTCCAGCAGTGCATAAGAAACGGCCTGCAAAGTCTGGATATCGACGTACAG 1285
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1049 TCTTACAGTTTCCAGCATTGCATAAGAAACGGCCTCCAAAGTCTGGATATCGACGTACAG 1108
Query 1286 AAATCACGCC 1295
|||| |||||
Sbjct 1109 AAATTACGCC 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105167166445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5