BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35180.4 Length=2787 Score E Sequences producing significant alignments: (Bits) Value Ahg330172 jgi|Araly1|330172|fgenesh1_pm.C_scaffold_7002399 2001 0.0 > Ahg330172 jgi|Araly1|330172|fgenesh1_pm.C_scaffold_7002399 Length=2319 Score = 2001 bits (1083), Expect = 0.0 Identities = 1160/1198 (97%), Gaps = 2/1198 (0%) Strand=Plus/Plus Query 1355 CATCAACTTGGGAAATCAAAAGCTTAAAAAAGCGCAGCGATGCAGAAACTCCAAGTTGTC 1414 |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 1118 CATCCACTTGGGAAATCAGAAGCTTGAAAAAGCGCAGCGATGCAGAAACTCCAAGTTGTC 1177 Query 1415 TTGTAACACACATGCTAGAAATCCACTCTAAACGTTGGTGCAAATGGAAGAGGACCAGCT 1474 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1178 TTGTAACACACATGCTAGAAATCCACTCTAAACGTTGGTGCAAATGGAAGAGGACTAGCT 1237 Query 1475 ACTCAAAGTTTGAAAAGACTATTCCATATGCATTACTCCTCCAAGTAGCAGGTCTGAAGG 1534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1238 ACTCAAAGTTTGAAAAGACTATTCCATATGCATTACTCCTCCAAGTAGCAGGTCTGAAGG 1297 Query 1535 AGTACATTGGAGCAAACCCAGCCTTCAAGTATGAAACTTCCGCCACGGTTGTCCAGTCCA 1594 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 1298 AGTACATTGGAGCAAACCCAGCCTTCAAGTATGAAACTTTCGCTACGGTTGTCCAGTCCA 1357 Query 1595 AGTTCCAAGATGTCCCCAATGGTGAATATGTAGATGAAGAAATGGAGGAGCAGTTTTATG 1654 |||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1358 AGTTCCCAGATATCCCTAATGGTGAATATGTAGATGAAGAAATGGAGGAGCAGTTTTATG 1417 Query 1655 ATGCCACGGACTCATCATCTGGA-GAAGAGGATGAGGAGGAAAGCGATGACGATGATGAA 1713 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 1418 ATGCCACGGACTCATCATCT-GATGAAGAGGATGAGGAGGAAAGCGATGAAGATGATGAA 1476 Query 1714 AATCAGGACAATAAGGAGATAAAAGTTAAACTGAAGAATGTTTCATGGGCAATCGCTAGC 1773 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1477 GATCAGGACAATAAGGAGATTAAAGTTAAACTGAAGAATGTTTCATGGGCAATCGCTAGC 1536 Query 1774 TTATCTTTGAAGCGACCTAAAGCTCCAGGCGCAAGTAATGTATTAGACGCTAGTGTTGAT 1833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1537 TTATCTTTGAAGCGACCTAAAGCTCCAGGCGCAAGTAATGTATTAGACGCTAGTGTTGAT 1596 Query 1834 CCTGTGAGTATCGATCCAAGTCAGTTCCAAGGATCTCTGCGCAAAGGAAATGGTGATAAG 1893 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1597 CCTGTGAGTATCGATCCAAGTCAGTTCCAAGGATCTCTGCGCAAAGGAAATGGTGATAAA 1656 Query 1894 GACTCAAATTGCTGGAATTCTCCTAGTGGCATGGGGTTTATGATCAGGGGAAAGACCTAC 1953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1657 GACTCAAATTGCTGGAATTCTCCTAGTGGCATGGGGTTTATGATCAGGGGAAAGACCTAC 1716 Query 1954 CTAAAAGATAATGCAAAGGTGATGGGTGGGCAGCCCCTTCTAACACTTATATCAGTGGAT 2013 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1717 CTAAAAGATAATGCAAAGGTGATGGGTGGGGAGCCCCTTCTAACACTTGTATCAGTGGAT 1776 Query 2014 TGGTTCAAAGTTGATAGTGCTGTAGACAACATCGCCCTGCATCCAAAATGTCTTATCCAG 2073 |||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1777 TGGTTCAAAGTTGATAAAGCTGTAGATAACATCGCCCTGCATCCAAAATGTCTTGTCCAG 1836 Query 2074 TCGGAACCTGGGAAAAAGCTCCCATTCATCCTAGTCATCAATCTACAGGTACCAGCAAAG 2133 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1837 TCGGAACCTGGGAAAAAGCTGCCATTCATCCTAGTCATCAATCTTCAGGTACCAGCAAAG 1896 Query 2134 CCTAACTATTGTCTGGTACTCTACTATGCTGCGGATCGACCTGTAAACAAGACTTCATCC 2193 |||||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||| Sbjct 1897 CCTAACTATTGTCTGGTACTCTACTATGCTTCGGATCGTCCTGTAAGCAAGTCTTCATCC 1956 Query 2194 CTGGGAAAATTCGTGGATGGGAGTGACAGTTACCGCGACGCAAGATTTAAGCTAATTCCA 2253 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1957 CTGGGAAAATTTGTGGATGGGAGTGACAGTTACCGCGACGCAAGATTTAAGCTGATCCCA 2016 Query 2254 AGTATTGTTCAGGGATATTGGATGGTCAAGCGGGCTGTTGGAACAAAAGCCTGCTTGCTC 2313 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 2017 AGTATTGTTCAGGGATATTGGATGGTCAAGCGGGCTGTTGGAACTAAAGCCTGCCTGCTC 2076 Query 2314 GGTAAAGCTGTGACCTGTAAGTACCTGAGGCAGGATAACTTTTTGGAGATTGATGTAGAT 2373 ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 2077 GGTAAAGCTGTAACCTGCAAGTACCTGAGGCAGGATAATTTTTTGGAGATTGATGTAGAT 2136 Query 2374 ATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGC 2433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2137 ATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGC 2196 Query 2434 CTCATTGTTGATCTCGCCATCTTGATTGAGGGAAAGGAGGAAAGCGATTTGCCCGAGTAT 2493 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 2197 CTCATTGTTGATCTCGCCATCTTGATTGAGGGAAAGGAGGAAACCGATTTGCCAGAGTAT 2256 Query 2494 ATCCTTGGGACAGTTCGACTTAACCGAATAGAGCTGGACTCAGCCGTATCATTTGAGG 2551 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2257 ATCCTTGGGACGGTTCGACTTAACCGAATAGAGCTGGACTCAGCCGTATCATTTGAGG 2314 Score = 1099 bits (595), Expect = 0.0 Identities = 712/766 (93%), Gaps = 18/766 (2%) Strand=Plus/Plus Query 121 ATGACATCGCCTGGATCGAAGAAAGTTGTTACCACCGACGACGGATCGGAGAAGAAAGTT 180 |||||||||||||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 1 ATGACATCGCCTGGATCGAAGAAACTTGTTACC-TC--CGACGGATCGGAGAAGAAAGTT 57 Query 181 TCCGGCAATCTCGGAAAAGTAAGTTTTTCCGGAGATCTTAATCATAGTGGAAGCCATAGT 240 ||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | ||| Sbjct 58 TCCGGTAATCTCGGAAAAGTTAGTTTTTCCGGAGATCTTAATGATAGTGGAAG-C--AGT 114 Query 241 GGAAGCCATAGTCGTAGCAGCAGCAGCGCCGGAGGTGGTGAAGGAGGAACGTTTGAGTAT 300 || | |||||||||||| | | ||| || || ||||||||||||||||||||| Sbjct 115 ---AG-C-----CGTAGCAGCAGC-G-G-CGGCGGCGGAGAAGGAGGAACGTTTGAGTAT 162 Query 301 TTCGGATGGGTTTATCATTTGGGTGTGAATAAGATCGGTCATGAGTACTGTAATCTTCGT 360 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 TTTGGATGGGTTTATCATTTGGGTGTGAATAAGATCGGTCATGAGTACTGTAATCTTCGT 222 Query 361 TTCCTTTTCATTAGAGGCAAATATGTTGAGATGTATAAAAGAGATCCTCATGAGAACCCA 420 || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 223 TTTCTTTTCATTAGAGGCAAATATGTTGAGATGTATAAAAGAGATCCTCGCGAGAACCCA 282 Query 421 GACATTAAACCTATAAGGCGTGGTGTCATAGGGCCGACAATGGTGATTGAAGAGCTAGGA 480 ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| Sbjct 283 GACATTAAACCTATAAGGCGTGGTGTCATAGGGCCTACAATGATGATTGAAGAGTTAGGA 342 Query 481 CGTCGAAAAGTTAATCATGGGGATGTCTACGTTATAAGGTTCTATAACCGGTTGGACGAG 540 ||||| ||||| |||| |||||||||||| || ||||||||||||||||||||||||||| Sbjct 343 CGTCGCAAAGTGAATCGTGGGGATGTCTATGTCATAAGGTTCTATAACCGGTTGGACGAG 402 Query 541 TCAAGGAAAGGAGAAATTGCTTGTGCTACTGCTGGAGAAGCCCTGAAATGGGTTGAGGCT 600 ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 403 TCAAGAAAAGGAGAAATTGCTTGTGCTACCGCTGGAGAAGCCGTGAAATGGGTTGAGGCT 462 Query 601 TTTGAGGAAGCAAAGCAGCAGGCTGAATATGCACTATCGAGAGGCGGAAGTACAAGAACA 660 ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 463 TTTGAGGAAGCAAAGCAGCAGGCTGAATATGCACTTTCGAGAGGTGGAAGCACAAGAACA 522 Query 661 AAGTTAAGCATGGAGGCCAACATCGATCTGGAAGGACATCGGCCTAGAGTACGGCGTTAT 720 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 523 AAGCTAAGCATGGAGGCCAACATCGATCTGGAAGGACATCGACCTAGAGTACGACGTTAT 582 Query 721 GCTTATGGATTAAAAAAGCTTATCCGAATTGGGCAAGGTCCAGAGTCTCTTTTGAGGCAA 780 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 583 GCTTATGGATTAAAAAAGCTTATCCGAATTGGGCAAGGTCCAGAGACTCTTTTGAGGCAA 642 Query 781 TCATCTACCCTGGTTAATGATGTCAGGGGTGATGGTTTCTATGAGGGTGGTGACAATGGA 840 || |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 643 TCCTCTACCTTGGTTAATGATGTTAGGGGTGATGGTTTCTATGAGGGTGGTGACAACGGA 702 Query 841 GATGCAATCGAGGCACACGAATGGAAATGTGTTCGTACAATCAATG 886 ||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 703 GATGCAATCGAGGCACATGAATGGAAGTGTGTTCGTACAATCAATG 748 Score = 590 bits (319), Expect = 2e-167 Identities = 353/370 (95%), Gaps = 0/370 (0%) Strand=Plus/Plus Query 926 GTGTTAGGATTTTTGAAGATGTTGCTAACTTCAAGGCTGGTCGAGGAGTTCTTGTGAAAG 985 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 749 GTGTTAGGATTTTTGAAGATGTGGCTAACTTCAAGGCTGGTCGAGGAGTTCTTGTGAAAG 808 Query 986 CCGTTGCTGTAGTTGAAGCAAGTGCGGATACCGTGTTCGAAGTACTTTTGAACATTGACA 1045 | ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||| Sbjct 809 CAGTTGCTGTAGTTGAAGCTAGTGCGGATACTGTGTTCGAAGTGCTTTTGAGCATTGACA 868 Query 1046 AACATCAAAGATACGAGTGGGATGCAGTAACAGGTGATTCGGAAAAGATAGACTCATACG 1105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 869 AACATCAAAGATACGAGTGGGATGCAGTAACAGGTGATTCGGAAAAGATAGACTCATATG 928 Query 1106 AGGGTCACTATGATGTCATTTATTGCATATACGATCCTAAATATCTTTCGCGATGGCAGT 1165 |||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| | Sbjct 929 AGGGCCACTATGATGTCATTTACTGCGTATACGATCCTAAATATCTTTCACGATGGCAAT 988 Query 1166 CAAAGAGAGATTTTGTGTTCTCTAGACAGTGGGTTCGTGGGCAAGATGGGACATATACAA 1225 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 989 CGAAGAGAGATTTTGTCTTCTCTAGACAGTGGGTTCGTGGGCAAGATGGGACATATACAA 1048 Query 1226 TCTTACAGTTTCCAGCAGTGCATAAGAAACGGCCTGCAAAGTCTGGATATCGACGTACAG 1285 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1049 TCTTACAGTTTCCAGCATTGCATAAGAAACGGCCTCCAAAGTCTGGATATCGACGTACAG 1108 Query 1286 AAATCACGCC 1295 |||| ||||| Sbjct 1109 AAATTACGCC 1118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105167166445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5