BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35220.1
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493599 jgi|Araly1|493599|fgenesh2_kg.7__3032__AT5G35220.1 2737 0.0
> Ahg493599 jgi|Araly1|493599|fgenesh2_kg.7__3032__AT5G35220.1
Length=1782
Score = 2737 bits (1482), Expect = 0.0
Identities = 1688/1787 (94%), Gaps = 16/1787 (1%)
Strand=Plus/Plus
Query 20 tctctctctctcCACTCCAATGGGGACTCTCACCAGCGTCGCTTTTGCCGCTGCCGTTAA 79
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 TCTCTCTCTCTCCACTCCAATGGGGACTCTCACCAGCGTCGCTTTTGCAGCTGCCGTTAA 60
Query 80 CATTAGATTCCGATCATTTCACCGGGAAAACATTAAGACAACAATTACAACTCTGCCCAA 139
||| |||||||||||||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 61 CATCAGATTCCGATCATTTCACCGGGAAAACATTAAGACAGC-A--ACAACGCTGCCCAA 117
Query 140 ATGGCAAAAGAGACTCTGTTTCTCTTCTACAGAGGATTCTCATAGATTTAGGATTGCAAA 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATGGCAAAAGAGACTCTGTTTCTCTTCTACAGAGGATTCTCATAGATTTAGGATTGCAAA 177
Query 200 GTGTTTAGGCAATGACGAAAACAGTAACAGAGACGACAGTATCGGAGAAAACGGAGAAAC 259
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 178 GTGTTTAGGCAATGACGAAAACAGTAACAGAGACAACAGTGTCGGAGATAACGGAGAAAC 237
Query 260 CCACAAGTCTTCGGTTGTTAAAACGGCAACGTTTGAAGAAGAAGATGAAGAGACAAGTAA 319
||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||
Sbjct 238 CCACAAGTCTTCGGTTGCTAAAACGGCTTCGCGTGAAGAAGAAGATGACGAGACAAGTAA 297
Query 320 GAGTAGCTCTACTACTAGCAGCAGCAACGAGTTCGGTTCCGACAAGACTTCAATGCCATC 379
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 CAGTAGTTCTACTACTATCAGCAGCAACGAGTTTGGTTCCGACAAGACTTCAATGCCATC 357
Query 380 -A---A-----CTATTGATCCAACATATAGTAGCTTCCAAATAGATTCGTTTAAGCTAAT 430
| | || ||||||| ||||| ||||||||||||||||||||||||||| | ||
Sbjct 358 AAGTGATTCGCCTGTTGATCCGACATACAGTAGCTTCCAAATAGATTCGTTTAAGTTGAT 417
Query 431 GGAGCTTCTTGGACCAGAGAAAGTAGATCCTGCAGATGTCAAGTTAATAAAGGACAAACT 490
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 GGAGCTTCTTGGACCTGAGAAAGTAGATCCTGCTGATGTCAAGTTAATAAAGGACAAACT 477
Query 491 TTTCGGTTATTCGACATTTTGGGTGACGAAAGAAGAGCCATTTGGGGACCTTGGGGAAGG 550
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 478 TTTCGGTTATTCGACATTTTGGGTGACTAAAGAAGAGCCATTTGGGGACCTTGGAGAGGG 537
Query 551 AATTCTCTTTCTTGGGAACTTGAGAGGAAAGAAAGAAGATGTTTTTGCAAAACTTCAGAG 610
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 AATACTCTTTCTTGGGAACTTGAGAGGAAAGAAGGAAGATGTTTTTGCAAAACTTCAGAG 597
Query 611 AAAACTAGTTGAAGTTGCTAGTGATAAATATAATTTATTCATGATTGAGGAGCCTAACTC 670
|||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 598 AAAACTAGCTGAAGTTGCTGGCGATAAATATAATTTATTTATGATTGAGGAGCCTAACTC 657
Query 671 AGAAGGACCTGATCCTCGCGGTGGTGCTCGTGTTAGCTTTGGTTTGCTTCGTAAAGAAGT 730
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAAGGACCAGATCCTCGTGGTGGTGCTCGTGTTAGCTTTGGTTTGCTTCGTAAAGAAGT 717
Query 731 TTCGGAGCCTGGACCAACTACACTCTGGCAGTATGTGATTGCTTTAATATTGTTTCTTTT 790
|| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 718 CTCCGAGCCAGGACCAACCACACTCTGGCAGTATGTGATTGCTTTAATATTATTTCTTTT 777
Query 791 GACTATTGGTTCCTCTGTGGAGTTAGGAATTGCTTCTCAGATTAACCGCTTACCTCCTGA 850
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 GACAATTGGTTCCTCTGTGGAGCTAGGAATTGCTTCTCAGATTAACCGCTTACCTCCTGA 837
Query 851 GGTGGTAAAGTATTTCACCGATCCAAATGCTGTTGAACCACCTGATATGGAGCTGCTGTA 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 GGTGGTAAAGTATTTCACCGATCCAAATGCTGTTGAACCACCTGATATGGAGCTGCTATA 897
Query 911 TCCATTTGTAGATGCTGCATTGCCTTTAGCTTATGGTGTATTGGGAATTCTTTTGTTTCA 970
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 898 TCCATTTGTAGATGCTGCTTTGCCTTTGGCATATGGTGTATTGGGAATACTTTTGTTTCA 957
Query 971 TGAATTAGGGCACTTTCTTGCTGCAGTTCCAAAGAAAGTTAAGCTTAGCATTCCATACTT 1030
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 TGAATTAGGGCACTTTCTAGCTGCAGTTCCAAAGAAAGTTAAGCTTAGCATTCCTTACTT 1017
Query 1031 CATTCCAAACATTACACTCGGCAGCTTTGGGGCAATCACACAGTTTAAGTCGATTCTTCC 1090
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1018 CATTCCAAATATTACACTCGGCAGCTTTGGGGCGATCACACAGTTTAAGTCGATTCTTCC 1077
Query 1091 TGACCGGAGTACAAAAGTTGACATTTCGCTAGCTGGTCCATTTGCTGGAGCTGCACTCTC 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGACCGGAGTACAAAAGTTGACATTTCGCTAGCTGGTCCATTTGCTGGAGCTGCACTCTC 1137
Query 1151 AGTTTCCATGTTTGCTGTTGGTCTGTTCCTATCTACAGAACCAGATGCAGCTAACGACCT 1210
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1138 AGTATCCATGTTTGCTGTTGGTCTATTCCTATCTACAGAACCGGATGCAGCTAACGACCT 1197
Query 1211 GGTCCAGGTTCCCAGCATGTTATTTCAAGGTTCATTACTTCTTGGACTCATCAGCAGAGC 1270
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1198 GGTCCAGGTTCCAAGCATGTTATTCCAAGGTTCATTACTTCTTGGACTCATCAGCAGAGC 1257
Query 1271 AACTCTGGGATATGCAGCTTTGCATGCTGCAACAGTTTCAATCCACCCACTTGTAATTGC 1330
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1258 AACTCTGGGATATGCAGCTTTGCATGCTGCGACAGTTTCAATCCACCCACTTGTAATTGC 1317
Query 1331 TGGATGGTGTGGTTTAACAACAACAGCATTTAATATGCTTCCAGTGGGATGTTTGGATGG 1390
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1318 TGGATGGTGTGGTTTAACAACAACAGCATTTAATATGCTTCCGGTGGGATGTTTGGATGG 1377
Query 1391 AGGAAGAGCTGTACAGGGAGCATTCGGGAAAAATGCATTGGTTACATTTGGTTTGTCAAC 1450
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1378 AGGAAGAGCTGTACAGGGCGCATTCGGGAAAAATGCATTGGTTACATTTGGTTTGACAAC 1437
Query 1451 CTATGTAATGCTTGGACTCAGAGTGCTCGGTGGCCCTTTGGCACTTCCTTGGGGACTCTA 1510
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1438 CTATGTAATGCTTGGACTCAGAGTGCTTGGCGGCCCTTTGGCACTTCCTTGGGGACTCTA 1497
Query 1511 -CGTATTAATCTGCCAGAGAACACCTGAAAAACCGTGTCTAAACGACGTGACCGAGGTTG 1569
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TC-TGCTAATCTGCCAGAGGACACCTGAAAAACCGTGTCTAAACGACGTGACCGAGGTTG 1556
Query 1570 GAACGTGGAGGAAGGCCCTTGTAGGGATTGCACTAATCCTGGTGGTTTTGACACTCCTGC 1629
|||| |||||||| |||||||| |||| |||| |||||||||| ||||||| |||||||
Sbjct 1557 GAACATGGAGGAAAGCCCTTGTCGGGACTGCAATAATCCTGGTCATTTTGACGCTCCTGC 1616
Query 1630 CTGTATGGGACGAACTCGCAGAAGAAGTAGGCATAGGGCTTGTAACCACATTTTGATGTC 1689
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1617 CTGTATGGGACGAACTCGCAGAAGAGGTAGGCATAGGGCTTGTAACCACATTTTGATGTT 1676
Query 1690 ATCTTCCGTCTTTGAGCAGACGTTGTAGTTAGGGCCAATCCG-AGACACAtttttttGTT 1748
||||| ||||||||||||| |||||||||||||||||| || || || |||||||| ||
Sbjct 1677 GTCTTCTGTCTTTGAGCAGATGTTGTAGTTAGGGCCAATTCGCAG-CAAATTTTTTTTTT 1735
Query 1749 TTGGCAATATTTAGATTGCCAGATATAATGAGCCATGTATGTACACT 1795
||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1736 TTGGCAATATTTAGATTGCTAGATATAATGAGCCATGTCTGTACACT 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69857509330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5