BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35320.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493600 jgi|Araly1|493600|fgenesh2_kg.7__3033__AT5G35320.1 1279 0.0
> Ahg493600 jgi|Araly1|493600|fgenesh2_kg.7__3033__AT5G35320.1
Length=965
Score = 1279 bits (692), Expect = 0.0
Identities = 887/977 (91%), Gaps = 30/977 (3%)
Strand=Plus/Plus
Query 1 AGAGAAGCTGAGAAATACCAATTTTTCTTCTATACATGTCGCTTCTCCTAACTTCTCCAG 60
||||||||||||||| |||| ||||||||||||||||||||||||| || |||| |||||
Sbjct 1 AGAGAAGCTGAGAAAGACCACTTTTTCTTCTATACATGTCGCTTCTTCTTACTTGTCCAG 60
Query 61 AATTTTATTATTGTCTCTGCT-CAAAGCTTTCACTTGCCGTTGAACAAACGAAGAATGGA 119
|||||||| ||| |||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 61 AATTTTATCATTATCTCTGCTAAAAAGC-TTCACTTGCCGTTGAATAAACGAAGAATGGA 119
Query 120 GGAGAACGAGCGCTTGTCGATGAAGAGGAAAGATATTGACAGAGTAAACGATGACTTCTC 179
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 120 GGAGAACGAGCGCTTGTCGATGAAGAGGAAAGATATTGACAGAGTTAACGACGAATTCTC 179
Query 180 TGATTTTTCCCTCTCTTCTCCCGCCAGGAAGATTCGTCGTCTGGATGTGGATTTGCCACC 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGACTTTTCCCTCTCTTCTCCCGCCAGGAAGATTCGTCGTCTGGATGTGGATTTGCCACC 239
Query 240 GATTATGGAGGAAGAAGAGATTGATTTACCGATGCAAGATACGGTCGCGGAAGAAATCGA 299
||||||||||||||| || |||||||| |||||||||||||| |||| ||||||||| ||
Sbjct 240 GATTATGGAGGAAGAGGAAATTGATTTGCCGATGCAAGATACTGTCGTGGAAGAAATTGA 299
Query 300 GCTTGAGCCGGTTAACGATGAGAGAGCAATTGTTCTATTTAAGCCTCTTCATTATCATCA 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 300 GCTTGAGCCGGTGAACGATGAGAGAGCAATTGTTCTATTTAAGCCTCTTCATTATCAGCA 359
Query 360 GCCTTCTTCTGGAAACGTATTTGTTGATCGACACTTGATTTCTGGGTTTAAGAATAGATT 419
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 360 GCCTTCTTCTGGAAACCTATTTGTTGATAGAGACTTGATTTCTGGGTTTAAGAATAGATT 419
Query 420 TCTTCGCGATGTATCGATAGCTGATGATAATCAGTATGAAGATGAGAGATTAAACAAGTG 479
||||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| ||
Sbjct 420 TCTTCGCGATGTATCAATAGCTGATGATAATCACTATGAAGATCAGAGATCCAACAAATG 479
Query 480 TCAAGCTGTTGTTTGCTGGAATCCGTCTCAGTCTACTTACTCACAGTCCATAGGAACCTT 539
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 480 CCAAGCAGTTGTTTGCTGGAATCCTTCTCAGTCTACTTACTCGCAGTCCATAGGAACCTT 539
Query 540 CCAACAACCGCGGACACTAGAGATTACTGAGTTGGATGAGACAGGTGAGGATGTGGTAAT 599
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 540 CCAACAACCGCGTACACTAGAGATTACTGAGTTAGATGAAACAGGTGAGGATGCGGTAAT 599
Query 600 GGATGATGCATCCAATGAGATAGAAGAGGATACTGGAAGCACCAGTCTATCTTTCCCTCA 659
|||||| ||| |||||||||||||||| |||| |||||| |||||||||||||| || ||
Sbjct 600 GGATGAAGCAACCAATGAGATAGAAGAAGATAGTGGAAGTACCAGTCTATCTTTTCCGCA 659
Query 660 GCAAGGACAGCAGCAAGAGCAAGAGCACACCTATGGTTTTGGCTTGCATCCGTGGCAGCA 719
||||||||||| ||||||| | ||||||||||||||||||||||| |||||||||
Sbjct 660 ACAAGGACAGCACCAAGAGC-----C-CACCTATGGTTTTGGCTTGCATCAGTGGCAGCA 713
Query 720 AGCG-CAAAACTGTATGATTCCGCAGCTTCCTCAAGTCAGTACTACTCCCACTCCCATCA 778
| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 714 A-CAACAAAACTGTATGATTCCGCAGCTTCCTCAAGTCAGTACTACTCCCGCTCCTGTCA 772
Query 779 CTTGGTTCCGATGATACGGCTTAACCACGGGA-A-A--A-C------T--G--AATAGGG 823
|||||||||||||||||||||||| || |||| | | | | | | |||||||
Sbjct 773 CTTGGTTCCGATGATACGGCTTAAGCATGGGAGACAGGAGCCCACCATCAGCGAATAGGG 832
Query 824 AATGCACGAAGCAG-GATAGTAGAAGGCAGATTTGTTGTTAGTTTTTGTTTCTGCCTTTT 882
||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 833 AATCCACGAAGCAGAG-TAGTAGAAGGCAGATTTGTTGTTAGTTTT-GTTTCTGCCTTTT 890
Query 883 GCGCAGATTAGAGATATGGCATAGTTTTGTTGTTGTATGTTTACCAAACTAATAGCTTCA 942
|||| ||||||||||||||| ||||||||||| ||||||| ||||||||||| ||||||
Sbjct 891 GCGCGGATTAGAGATATGGCGTAGTTTTGTTGCTGTATGT--ACCAAACTAATGGCTTCA 948
Query 943 GCCATATCTCCCCTAGG 959
|| ||||||||||||||
Sbjct 949 GCTATATCTCCCCTAGG 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5