BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35330.1
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947174 jgi|Araly1|947174|scaffold_703403.1 1164 0.0
> Ahg947174 jgi|Araly1|947174|scaffold_703403.1
Length=878
Score = 1164 bits (630), Expect = 0.0
Identities = 740/793 (93%), Gaps = 7/793 (1%)
Strand=Plus/Plus
Query 203 TGAGGATAGAGGTGAGAATCAGTTAGTGGTTTATGACTTGAAAGGAAATGATGATACTGA 262
|||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 89 TGAGGATAGAGGTGAGAATCAGTTGGTGGTTTATGACTTGAAAGG-AA--ATGATACTGA 145
Query 263 AGAAGAAGTTCTACCGGTTCAATCTCAGCCTT-TGTCATCTAGAACACAGTGTCCCTCTA 321
|||||||||||| ||| ||||||||||| ||| |||||| || ||||||||||||||||
Sbjct 146 AGAAGAAGTTCTCCCGATTCAATCTCAG-CTTCCGTCATCCAGGACACAGTGTCCCTCTA 204
Query 322 TCGGGGCATTTACGGTTCAGTGTGCAAGTTGTTTCAAATGGAGACTCATGCCTTCAATGC 381
| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 205 TTGGGGCTTTTACGGTTCAGTGTGCTAGTTGTTTCAAATGGAGACTTATGCCTTCGATGC 264
Query 382 AGAAGTATGAAGAGATTAGGGAACAGCTTCTTGAAAACCCGTTTTTCTGCGATACAGCGC 441
||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| |
Sbjct 265 AGAAGTATGAAGAGATTAGGGAACAACTTCTAGAAAACCCGTTTTTCTGTGAAACAGCAC 324
Query 442 GTGAGTGGAAGCCGGATATTTCTTGTGATGTTCCTGCTGATATCTATCAAGATGGAACTC 501
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 325 GTGAATGGAAGCCAGATATTTCTTGCGATGTTCCTGCTGATATCTATCAAGATGGAACTC 384
Query 502 GTCTTTGGGCTATTGATAAACCGAATATCTCTCGTCCACCCGCTGGCTGGCAACGTTTAC 561
|| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 385 GTGTTTGGGCTATCGATAAGCCGAATATCTCTCGCCCACCCGCTGGCTGGCAACGTTTAC 444
Query 562 TGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCTGATGTTTATTATGTTGCTCCGTCTG 621
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |
Sbjct 445 TGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCCGATGTCTATTATGTTGCTCCTTCAG 504
Query 622 GAAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAATGACAACTCCGAATACA 681
| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 505 GGAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAACGACAACCCCGAATACA 564
Query 682 TTG-GAGAAGGGGTGAAACTTTCACAGTTCTCGTTTCAAATCCCGAAACCGCTGCAGGAT 740
| | | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 565 T-GAGTGAAGGGGTGAAACTTTCACAGTTCTCGTTCCAAATCCCGAAACCGCTACAGGAT 623
Query 741 GACTACGTGAGGAAGCGCCCAGCTCGACTACTGGATTCCATCGATAATACAAACACCCCT 800
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 624 GACTATGTGAGGAAGCGCCCAGCTCGACTAGTGGATTCCATCGATAATACAAACACCCAT 683
Query 801 GTAGCTAAAGAAGCTAATCCACTGGCATGGATATCTCCAGATGATCATATATCGTTGCAG 860
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 684 GTAGCTAAAGAAGCTAATCCACTAGCATGGATCTCTCCAGATGATCATATAGCGTTGCAG 743
Query 861 CTAGGTACGCCAACCGAGTCTGGACTTAACAATTCACATTACCAACCATCGaaaaagaaa 920
||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 744 CTAGGTACGCCAACCGAGTCTGGACTTTACAATTCACATGATCAACCATCGAAAAAGAAA 803
Query 921 aaaaCATCGACGCTATCAATCTTTGGCTCCAACGACGAACTTGCTGATAGATAATCTAGC 980
|||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 804 AAAACATCGAAGCTATCGATCTTTGGCGCCAACGACGAACTTGCTGATAGATAATCTAGC 863
Query 981 TAGACGAGAGTGA 993
||||| |||||||
Sbjct 864 TAGACAAGAGTGA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45709377483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5