BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G35338.2

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg330181 jgi|Araly1|330181|fgenesh1_pm.C_scaffold_7002408           610    3e-174


> Ahg330181 jgi|Araly1|330181|fgenesh1_pm.C_scaffold_7002408
Length=468

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 423/469 (90%), Gaps = 2/469 (0%)
 Strand=Plus/Plus

Query  1    ATGGTTCAGTGCACCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAT  60
            |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGTTCAATGTGCCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAA  60

Query  61   ATAATCAAAGAAACACAACTTCAAACCCCATTTGTCTGCG-GCACAACATCTGGTTGGAC  119
            | ||||||||||||||||||||||||||| |||||||||| | | | ||| || ||||||
Sbjct  61   ACAATCAAAGAAACACAACTTCAAACCCCCTTTGTCTGCGAG-AGAGCATGTGCTTGGAC  119

Query  120  GCCAAACATGTCATGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGCCTAGCAT  179
            |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  120  GCCAAACATGTCTTGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGTCTAACAT  179

Query  180  CCCTCCCATACCCACCGGCTGGTCACGTTCTGTCCATATTAGAAGTGAATCCACAAAATT  239
            ||||||||||||||||||||||||||| || ||  ||||||||||||| |||||||||||
Sbjct  180  CCCTCCCATACCCACCGGCTGGTCACGCTCGGTGTATATTAGAAGTGATTCCACAAAATT  239

Query  240  CGCAGACGTCTATTATTTTCCTCCATCAGGAGAGAGGCTAAGATCATCGGCTGAGGTTCA  299
             |||||||| |||||||||||||||||||||||||||||| ||||||| ||||| || | 
Sbjct  240  TGCAGACGTATATTATTTTCCTCCATCAGGAGAGAGGCTACGATCATCAGCTGATGTCCG  299

Query  300  AAGTTTCTTGGACAACCACCCAGAATACGTGAGAGAAGGGGTAAATCGTTCTCAATTCTC  359
            ||||||||||||||||||||||||||| ||||||| |||||| |||| |||||| |||||
Sbjct  300  AAGTTTCTTGGACAACCACCCAGAATATGTGAGAGCAGGGGTGAATCCTTCTCAGTTCTC  359

Query  360  ATTTCAGATACCGAAACCTTTGGACGATAACTACGTGAAGAAGCGTACTCGACCAGTGAA  419
            ||||||| | ||||||||  ||||||| ||||| ||||||||||| ||||||||||||||
Sbjct  360  ATTTCAGTTGCCGAAACCCCTGGACGAGAACTATGTGAAGAAGCGCACTCGACCAGTGAA  419

Query  420  ACGAAGAAAATCTTCGAAGGATAACAATTGCGAAAAGGGCAAAAAATGA  468
            || || |||||| || ||||||||||||||  |||||| ||||||||||
Sbjct  420  ACCAACAAAATCGTCAAAGGATAACAATTGTAAAAAGGACAAAAAATGA  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16941081516


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5