BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35338.2 Length=468 Score E Sequences producing significant alignments: (Bits) Value Ahg330181 jgi|Araly1|330181|fgenesh1_pm.C_scaffold_7002408 610 3e-174 > Ahg330181 jgi|Araly1|330181|fgenesh1_pm.C_scaffold_7002408 Length=468 Score = 610 bits (330), Expect = 3e-174 Identities = 423/469 (90%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 1 ATGGTTCAGTGCACCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAT 60 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTTCAATGTGCCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAA 60 Query 61 ATAATCAAAGAAACACAACTTCAAACCCCATTTGTCTGCG-GCACAACATCTGGTTGGAC 119 | ||||||||||||||||||||||||||| |||||||||| | | | ||| || |||||| Sbjct 61 ACAATCAAAGAAACACAACTTCAAACCCCCTTTGTCTGCGAG-AGAGCATGTGCTTGGAC 119 Query 120 GCCAAACATGTCATGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGCCTAGCAT 179 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 120 GCCAAACATGTCTTGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGTCTAACAT 179 Query 180 CCCTCCCATACCCACCGGCTGGTCACGTTCTGTCCATATTAGAAGTGAATCCACAAAATT 239 ||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||| Sbjct 180 CCCTCCCATACCCACCGGCTGGTCACGCTCGGTGTATATTAGAAGTGATTCCACAAAATT 239 Query 240 CGCAGACGTCTATTATTTTCCTCCATCAGGAGAGAGGCTAAGATCATCGGCTGAGGTTCA 299 |||||||| |||||||||||||||||||||||||||||| ||||||| ||||| || | Sbjct 240 TGCAGACGTATATTATTTTCCTCCATCAGGAGAGAGGCTACGATCATCAGCTGATGTCCG 299 Query 300 AAGTTTCTTGGACAACCACCCAGAATACGTGAGAGAAGGGGTAAATCGTTCTCAATTCTC 359 ||||||||||||||||||||||||||| ||||||| |||||| |||| |||||| ||||| Sbjct 300 AAGTTTCTTGGACAACCACCCAGAATATGTGAGAGCAGGGGTGAATCCTTCTCAGTTCTC 359 Query 360 ATTTCAGATACCGAAACCTTTGGACGATAACTACGTGAAGAAGCGTACTCGACCAGTGAA 419 ||||||| | |||||||| ||||||| ||||| ||||||||||| |||||||||||||| Sbjct 360 ATTTCAGTTGCCGAAACCCCTGGACGAGAACTATGTGAAGAAGCGCACTCGACCAGTGAA 419 Query 420 ACGAAGAAAATCTTCGAAGGATAACAATTGCGAAAAGGGCAAAAAATGA 468 || || |||||| || |||||||||||||| |||||| |||||||||| Sbjct 420 ACCAACAAAATCGTCAAAGGATAACAATTGTAAAAAGGACAAAAAATGA 468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16941081516 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5