BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35360.3
Length=2029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493601 jgi|Araly1|493601|fgenesh2_kg.7__3034__AT5G35360.1 2658 0.0
> Ahg493601 jgi|Araly1|493601|fgenesh2_kg.7__3034__AT5G35360.1
Length=1993
Score = 2658 bits (1439), Expect = 0.0
Identities = 1632/1722 (95%), Gaps = 25/1722 (1%)
Strand=Plus/Plus
Query 53 GGAGGATTCAATATCTCAGAGTTTCACTCTCAACATTTCATtctctctctctctctcAAC 112
|||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||
Sbjct 1 GGAGGATTCAATATCTCACAGTTCCACTCTCAACATTTCAATCTCTCTCTCTCTCTCAAC 60
Query 113 AATTAGATCTGTTTCGATAATCACGAGGTTTCC-CTCACTTCCTTTCCATTGCTAAACCA 171
| ||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||||||
Sbjct 61 AGTTAGATCTGTTTCGATACTCACGAGGTTTCCTCTCACTTCC-TTCCATTGTTAAACCA 119
Query 172 GGATTTG---CCTCCTGCATTTGGAAATGGACGCTTCTATGATTACCAATTCCAAATCCA 228
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GGATTTGCTTCCTCCTGCATTTGGAAATGGACGCTTCTATGATTACCAATTCCAAATCCA 179
Query 229 TTACTTCTCCACCC------TCTTTAGCCTTAGGGAAGTCAGGAGGAGGAGGAGTTATCA 282
|| ||||||||||| ||||||| ||| ||| | | || |||||||||||| |
Sbjct 180 TTGCTTCTCCACCCGTGAAGTCTTTAGTCTT-GGG--G--AAGA-CAGGAGGAGTTATTA 233
Query 283 GAAGTTCACTATGTAACTTAATGATGCCAAGCAAAGTTAACTTCCCTAGACAAAGAACTC 342
||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct 234 GAAGTTCACTATGTAACTTGATGATGCCAAGTAAGGTTAACTTTCCTAGACAAAGAACTC 293
Query 343 AAACTCTAAAGGTTAGCCAGAAGAA-ACTCAAGAGAGCTACTAGTGGT-G-G-TCTTGGT 398
||||| ||||||||||||||||||| | ||||||||||||||||||| | | |||||||
Sbjct 294 AAACTTTAAAGGTTAGCCAGAAGAAGGC-CAAGAGAGCTACTAGTGGTGGTGCTCTTGGT 352
Query 399 GTTACATGCAGTGGTGGTGATAAGATTCTCGTAGCGAATCGAGGTGAAATTGCAGTTCGT 458
| |||||||| |||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 353 GCTACATGCA---GTGGTGATAAGATTCTTGTGGCGAATCGAGGTGAAATCGCAGTTCGT 409
Query 459 GTTATCAGAACTGCTCATGAAATGGGGATTCCTTGTGTTGCTGTGTATTCTACTATAGAT 518
|||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 410 GTTATCCGAACTGCTCACGAAATGGGGATTCCTTGTGTTGCTGTCTATTCAACTATTGAT 469
Query 519 AAAGATGCTCTTCATGTTAAATTAGCTGATGAAGCTGTTTGTATTGGTGAAGCTCCTAGT 578
|| ||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 470 AAGGATGCCCTCCATGTCAAATTGGCTGATGAAGCTGTTTGCATTGGTGAAGCTCCTAGC 529
Query 579 AACCAGTCGTATTTGGTGATTCCGAATGTTCTGTCTGCGGCTATTAGCCGTGGATGTACA 638
||||||||||| ||||| ||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 530 AACCAGTCGTACTTGGTAATTCCAAATGTTCTGTCTGCTGCTATCAGTCGTGGATGTACA 589
Query 639 ATGCTTCATCCTGGATATGGTTTTCTTTCGGAGAACGCTCTCTTTGTTGAAATGTGTAGA 698
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 590 ATGCTTCATCCTGGATACGGTTTCCTTTCGGAGAATGCTCTCTTTGTTGAAATGTGCAGA 649
Query 699 GACCATGGGATCAATTTTATTGGACCTAATCCTGATAGCATCCGTGTTATGGGAGACAAA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GACCATGGGATCAATTTTATTGGACCTAATCCTGATAGCATCCGTGTTATGGGAGACAAA 709
Query 759 GCGACTGCAAGAGAGACAATGAAAAATGCAGGGGTTCCCACTGTACCAGGGAGTGATGGG 818
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 710 GCAACTGCAAGAGAGACAATGAAAAATGCTGGGGTTCCCACTGTACCAGGGAGTGATGGG 769
Query 819 CTATTGCAGAGTACAGAAGAAGCTGTCAGGGTCGCCAATGAGATTGGTTTCCCTGTAATG 878
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 770 CTATTGCAGAGCACAGAAGAAGCAGTCAGGGTCGCCAATGAGATTGGTTTCCCTGTTATG 829
Query 879 ATCAAGGCAACAGCTGGTGGTGGTGGACGTGGAATGCGTCTTGCTAAGGAACCGGGAGAG 938
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 830 ATCAAGGCAACAGCCGGTGGTGGTGGACGTGGAATGCGTCTTGCTAAGGAACCAGGAGAG 889
Query 939 TTTGTAAAACTGTTGCAGCAAGCTAAGAGCGAGGCTGCTGCTGCTTTTGGGAATGATGGA 998
|||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 890 TTTGTAAAACTGTTACAGCAAGCTAAGAGTGAGGCTGCTGCTGCTTTTGGAAATGATGGA 949
Query 999 TGTTATCTGGAGAAGTTCGTACAAAACCCTAGACATATTGAGTTCCAGGTGCTGGCAGAT 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TGTTATCTGGAGAAGTTCGTACAAAACCCTAGACATATTGAGTTCCAGGTGCTGGCAGAT 1009
Query 1059 AAATTTGGAAATGTTGTTCACTTTGGTGAGCGTGACTGCAGCATCCAGAGGCGTAACCAA 1118
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1010 AAATTTGGAAATGTTGTTCACTTTGGTGAGCGTGACTGCAGCATTCAGAGGCGTAACCAA 1069
Query 1119 AAGCTTCTGGAAGAAGCACCTTCTCCAGCATTGACCGCTGAATTGCGAAAAGCCATGGGT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AAGCTTCTGGAAGAAGCACCTTCTCCAGCATTGACCGCTGAATTGCGAAAAGCCATGGGT 1129
Query 1179 GATGCAGCAGTCGCAGCAGCAGCATCCATTGGGTACATTGGTGTTGGTACTGTGGAGTTT 1238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1130 GATGCAGCAGTCGCAGCAGCAGCATCCATTGGGTACATTGGTGTTGGTACTGTGGAATTT 1189
Query 1239 CTTTTAGATGAGAGAGGTTCCTTCTACTTCATGGAAATGAACACTAGGATCCAGGTGGAG 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CTTTTAGATGAGAGAGGTTCCTTCTACTTCATGGAAATGAACACTAGGATCCAGGTGGAG 1249
Query 1299 CATCCTGTGACAGAGATGATTTACTCTGTTGATTTGATAGAGGAGCAGATTCGTGTTGCA 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CATCCTGTGACAGAGATGATTTACTCTGTTGATTTGATAGAGGAGCAGATTCGTGTTGCA 1309
Query 1359 ATGGGAGAGAAACTTCGTTACAAACAGGAAGATATTGTGCTCAGAGGGCACTCAATTGAA 1418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1310 ATGGGAGAGAAACTTCGTTACAAACAGGAAGATATCGTGCTCAGAGGGCACTCAATTGAA 1369
Query 1419 TGTCGTATCAATGCAGAAGATCCATTTAAAGGATTCAGACCTGGACCTGGCAGAATAACA 1478
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1370 TGTCGTATCAACGCAGAAGATCCATTTAAAGGATTCAGACCTGGACCTGGGAGAATAACA 1429
Query 1479 TCATACCTGCCATCTGGAGGTCCTTTCGTTAGAATGGACAGCCATGTCTATTCCGACTAT 1538
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1430 TCATACTTGCCATCTGGAGGTCCTTTCGTTAGAATGGACAGCCATGTTTATTCCGACTAT 1489
Query 1539 GTTGTGCCTCCAAGCTATGATTCTCTTCTTGGGAAGCTTATTGTGTGGGCTCCAACGAGG 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GTTGTGCCTCCAAGCTATGATTCTCTTCTTGGGAAGCTTATTGTGTGGGCTCCAACGAGG 1549
Query 1599 GAAAAAGCAATTGAACGGATGAAGCGGGCGCTTAATGACACTATCATTACAGGGGTTCCA 1658
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1550 GAAAAAGCAATTGAAAGGATGAAGCGTGCGCTTAATGACACTATAATTACAGGGGTTCCA 1609
Query 1659 ACGACTATCAATTACCACAAACTTATCCTTGATGTTGAGGATTTCAAAAATGGAAAAGTT 1718
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ACGACTATCAATTACCATAAACTTATCCTTGATGTTGAGGATTTCAAAAATGGAAAAGTT 1669
Query 1719 GATACAGCTTTCATCGTCAAGCATGAAGAGGAGCTAGCTGAG 1760
|||||||||||||| |||||||||||||||||||||||||||
Sbjct 1670 GATACAGCTTTCATTGTCAAGCATGAAGAGGAGCTAGCTGAG 1711
Score = 174 bits (94), Expect = 2e-42
Identities = 104/109 (95%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1918 AGCCTCAAGAAATTGTGGCAGTGAAAGATCTGACAAACGCAACGGTTTAGAATGATACAT 1977
||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||| ||
Sbjct 1710 AGCCTCACGAAATTGTGGCAGTGAAAGATTTGACAAACGCAGCGGTTTAGAAAGATATAT 1769
Query 1978 CAGCTCTGAAAGACCACCCAATTATTGCAATCTTCGTCTCCTTTTGTGT 2026
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 CAGCTCTGAAAGACCACCCAATTATTGCAATCTTCGTCTCCTTTTGTGT 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76294760735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5