BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35380.1 Length=2196 Score E Sequences producing significant alignments: (Bits) Value Ahg330184 jgi|Araly1|330184|fgenesh1_pm.C_scaffold_7002411 3280 0.0 Ahg342926 jgi|Araly1|342926|fgenesh1_pg.C_scaffold_3002689 667 0.0 > Ahg330184 jgi|Araly1|330184|fgenesh1_pm.C_scaffold_7002411 Length=2214 Score = 3280 bits (1776), Expect = 0.0 Identities = 2077/2220 (94%), Gaps = 30/2220 (1%) Strand=Plus/Plus Query 1 ATGGTGAGAACCTCCGAGAAAAGAGAAGAAAATATTACTCTT-GCCATTGACAGAGACAA 59 ||||||| ||||| ||||||||||||||||| |||||| || ||||||||||||||||| Sbjct 1 ATGGTGAAAACCTGCGAGAAAAGAGAAGAAAGTATTAC-GTTGGCCATTGACAGAGACAA 59 Query 60 AGAGAGCCAAAACGCGTTGAAATGGGCGGTTAGCAATCTTCTTAGCCGAGGACAGACTCT 119 ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| Sbjct 60 AGAGAGCCAAAACGCTTTGAAATGGGCGGTTACCAATCTTCTTAGCCGAGGCCAGACTCT 119 Query 120 TACTCTTCTTCATGTTAAACTCAAACAACCCTCCTCTCTTCCCTATTCTGGATCAAACTT 179 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||| | Sbjct 120 TACTCTTCTTCATGTCAAACTCAAACAACCCTCTTCTCTTCCCTATTCCGGATCTAACCT 179 Query 180 TAGTAAGCCAGGCGATGATCCGTCAGAATTGTTTCTTCCTTTTCGTTGCTACTGTGCTAG 239 ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || Sbjct 180 TAGTAAGCCAGGCGATGATCCGTCAGAATTGTTTCTTCCCTTCCGTTGCTATTGTGCCAG 239 Query 240 AAAAGATATCAACTGCCAAGATGTGGTTGTGGAGGACGTTAGTGCGGCTAAAGGAATAGT 299 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 240 AAAAGATATCAACTGCCAAGATGTGGTTGTAGAGGATGTTAGTGCGGCTAAAGGAATAGT 299 Query 300 TGACTACGTGCAACAGAATGCAATCGAGACTTTAATACTCGGTTCTTCGAAGATGACTCT 359 |||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 300 TGACTATGTGCAACAGAATGCAATCGAGACTCTAATACTCGGTTCATCGAAGATGACTCT 359 Query 360 TTT---AAGGTTCAAAGCAGCGGATGTTTCAAGCACTGTCATGAAAAAGGCACCGAGTTT 416 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 360 TTTAAGAAGGTTCAAAGCAGCGGATGTTTCAAGCACCGTCATGAAAAAGGCACCGAGTTT 419 Query 417 CTGTACAGTATATGTTATCTCTAAAGGGAAAATCTCGTTTCTGAGATCAGCTACAAGTTC 476 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 CTGTACTGTATATGTTATCTCTAAAGGGAAAATCTCGTCTCTGAGATCAGCTACAAGTTC 479 Query 477 ACCTCCCCATTCCAATATGCCATCTATGCGACATCATTCACACGCTCAGACGAGCAATAT 536 |||||||||||||| |||||| |||||||||| ||| | |||||||||||||| ||| | Sbjct 480 ACCTCCCCATTCCATTATGCCGCCTATGCGACAGCATGCTCACGCTCAGACGAGTAATCT 539 Query 537 GAATGTTGAAAGGAGGCAACAAACAATGCAAAGAACACATGATGAGATCAAGATAGAGAT 596 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 540 GAATGTTGAAAGGAGGCAACAAACAATGCAAAGAACACATGACGAGATCAAGATCGAGAT 599 Query 597 CAAAAGAGGATACGAAGGCGTTTACCAGCCCTCAATAACAGACTCTGATATATCATTTGT 656 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 CAAAAGAGGATACGAAGGCGTTTACCAGCCCTCGATAACAGACTCTGATATATCATTTGT 659 Query 657 GAGTAGTGGAAGACCGAGTGTGGATCAGATGTTTCCTTCCTTGTATGACGATGTGGATGT 716 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 660 GAGTAGTGGAAGACCGAGTGTGGATCAGATGTTTCCTTCCTTGTATGACAATGTGGATGT 719 Query 717 TCCACGGCTCTCAGTCACCTCTGAGTATGGAGAAAATCGATTGAGTTTTGCTACAACATA 776 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| Sbjct 720 TCCACGGCTCTCAGTCAGCTCTGAGTATGGAGAAAATCGATCCAGTTTTGCTACATCATA 779 Query 777 CTCAAAGCAGTCCATAGATCTTGGCTCACCATATGCACCAAACTCTTCAACCTCATTTGA 836 ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| Sbjct 780 CTCAAAGCAGTCCATAGATCTCGGCTCACCATATGCACCAAACTATTCAAGCTCATTTGA 839 Query 837 AAGTGGGAGACAATCATTTTCACTACAGGGCCAAGATGAGCTTGAAACCGAGATGAGAAG 896 |||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||||||| Sbjct 840 AAGTGGGAGACAATCATTCTCACTACAGAGCCAGGATGAGATTGAAACCGAGATGAGAAG 899 Query 897 GCTGAAGATGGAGCTAAAGCATACAATGGAAATGTATAACAGTGCCTGCAAGGAAGCAAT 956 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GCTGAAAATGGAGCTAAAGCATACAATGGAAATGTATAACAGTGCCTGCAAGGAAGCAAT 959 Query 957 CTCTGCAAAGAAAGCGGCTAACGAGTTACTCAAGTGGAAAGCAGAGAAGGAACATAAATT 1016 |||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| Sbjct 960 ATCTGCAAAGAAAGCGGCTAATGAGTTACACAAGTGGAAAGCAGATAAGGAACATAAATT 1019 Query 1017 AGAAGAAGTGAGACTTTCCAAGGAAGCAGCGATGGCAATGGCAGAGAGGGAGAAAGAAAA 1076 |||||| ||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 1020 AGAAGAGGTGAGACTTGCCAAGGAGGCAGCAATGGCAATGGCAGAGAGAGAGAAAGAAAA 1079 Query 1077 AAGCAGAGCAGCTATGGAAGCGGCAGTGGCAGCGCAGA-AATTATCAG-ACCTTGAAGCT 1134 | |||||||||| |||||||||||||||||||| || | ||| ||||| || |||||||| Sbjct 1080 AGGCAGAGCAGCCATGGAAGCGGCAGTGGCAGCTCAAAGAAT-ATCAGCAC-TTGAAGCT 1137 Query 1135 GAAAAGAGAAAGCACATTGAAACCGTAGATGAAAAGAAGAGGGCGGTGTCTTCT-T--T- 1190 ||||||||||||| ||||||||| |||| ||||||||||||| | |||||||| | | Sbjct 1138 CAAAAGAGAAAGCAAATTGAAACCATAGAGGAAAAGAAGAGGGTGATGTCTTCTGTAGTG 1197 Query 1191 AA-----------GGTACAGAAAATACACTATTGAGGAGATTGAAGAAGCCACAGAAGAT 1239 || ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1198 AAAACTAATTTAAGGTACAGAAAATACAGTATTGAGGAGATTGAAGAAGCCACAGAAGAT 1257 Query 1240 TTCTCGCCTAGTCGCAAGGTCGGAGAAGGAGGCTATGGACCTGTTTACAAGGGAACACTA 1299 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1258 TTCTCGCCTAGTCGCAAGGTAGGAGAAGGAGGCTATGGACCTGTTTACAAGGGAACACTA 1317 Query 1300 GACTATACTAAAGTGGCGATAAAAGTTCTAAGACCAGACGCGGCACAAGGAAGGTCTCAG 1359 || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1318 GATTATACTAAAGTGGCAATAAAAGTTCTAAGACCAGATGCGGCACAAGGAAGGTCTCAG 1377 Query 1360 TTCCAGCGAGAGGTTGAAGTACTAACCTGTATGAGACATCCAAACATGGTTCTCCTGCTT 1419 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 TTCCAGCAAGAAGTTGAAGTACTAACCTGTATGAGACATCCAAACATGGTTCTCCTGCTT 1437 Query 1420 GGTGCATGTCCGGAATACGGATGTTTAGTCTATGAATACATGGCCAATGGTAGCTTAGAC 1479 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1438 GGTGCCTGTCCGGAATACGGATGTTTAGTCTACGAATACATGGCCAATGGTAGCTTAGAA 1497 Query 1480 GACTGTC-TCTTCAGACGAGGAAACTCTCCAATCCTTTCTTGGCAGCTAAGATTTCGTAT 1538 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 GACTG-CATCTTCAGACGAGGAAACTCTCCAATCCTTTCTTGGCAGCTAAGATTTCGTAT 1556 Query 1539 AGCATCTGAAATCGCAACCGGTCTTCATTTCCTCCACCAGATGAAACCGGAGCCTTTGGT 1598 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1557 AGCAGCTGAAATCGCAACCGGTCTTCATTTCCTCCACCAGATGAAACCGGAGCCTTTAGT 1616 Query 1599 GCACCGTGACCTTAAACCGGGAAACATATTACTCGACCAGCATTTCGTCAGCAAGATTTC 1658 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1617 GCACCGTGACCTTAAACCGGGAAACATATTACTTGACCAGCATTTTGTCAGCAAGATTTC 1676 Query 1659 AGATGTGGGCTTGGCCAGACTCGTCCCTCCATCTGTTGCTGACACTGCAACCCAATATAG 1718 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1677 CGATGTTGGCTTGGCCAGACTCGTCCCTCCATCTGTTGCTGACACTGCAACCCAATATAG 1736 Query 1719 AATGACTTCAACCGCTGGAACATTCTTTTACATAGATCCTGAATATCAGCAGACCGGTAT 1778 |||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||| Sbjct 1737 AATGACATCAACCGCTGGAACATTCTGTTACATAGATCCAGAGTATCAGCAGACCGGTAT 1796 Query 1779 GTTGGGAACTAAGTCAGACATTTACTCATTCGGCATTATGCTTTTGCAAATACTTACAGC 1838 |||||| ||||| ||||||||||| || |||||||||||||||||||||||| ||||||| Sbjct 1797 GTTGGGGACTAAATCAGACATTTATTCGTTCGGCATTATGCTTTTGCAAATAATTACAGC 1856 Query 1839 TAAGCCACCAATGGGTTTAACTCATCACGTCGAAAAAGCCATTGAAAAGGGAACTTTCGC 1898 |||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||| Sbjct 1857 TAAGCCACCAATGGGTTTGACTCATCACGTCGAAAGAGCAATCGAAAAGGGAACTTTCGC 1916 Query 1899 TGAGATGTTAGACCCTGCTGTTCCTGACTGGCCATTCGAAGAAGCCTTGGCTGCAGCAAA 1958 |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| Sbjct 1917 TGAGATGTTAGACCCTGCTGTTCCTGACTGGCCAGTCGAAGAGGCCTTGGTTGCAGCAAA 1976 Query 1959 ACTTGCTCTACAATGTGCAAAATTAAGACGCAAAGACAGACCTGACTTAGGGAACATTGT 2018 |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1977 ACTTGCTCTAAAATGTGCAGAATTAAGACGCAAAGACAGACCTGACTTAGGGAATGTTGT 2036 Query 2019 TTTGCCTGAGCTTAAAAAACTCAGGGATCTAGCTGAAGAAAGCATTAAATTTGGTGTAAG 2078 ||||||||||||||| |||||||||||| |||| |||||||||||||||||||| | ||| Sbjct 2037 TTTGCCTGAGCTTAACAAACTCAGGGATGTAGCCGAAGAAAGCATTAAATTTGGCGGAAG 2096 Query 2079 ACAGCCTTCACCGATCAGGAGCTCAGGGTCCGCGACTTCGA-TACAGGAGATTATAAGTG 2137 ||||||||||| ||||||||||||||||||||||| || | ||||||||||||| |||| Sbjct 2097 CCAGCCTTCACCAATCAGGAGCTCAGGGTCCGCGACCTC-ACTACAGGAGATTATGAGTG 2155 Query 2138 ATCCTCAGCTACAATATGGATCTGATAGCTCAAGTTTGCA-CAACAGTTCTACATCTTGA 2196 ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| Sbjct 2156 ATCCTCAGCTACAATATGGATCTGATAGCTCAAGTAT-CAACAACAGTTCTACATCTTGA 2214 > Ahg342926 jgi|Araly1|342926|fgenesh1_pg.C_scaffold_3002689 Length=2133 Score = 667 bits (361), Expect = 0.0 Identities = 721/891 (81%), Gaps = 39/891 (4%) Strand=Plus/Plus Query 1194 GTACAGAAAATACACTATTGAGGAGATTGAAGAAGCCACAGAAGATTTCTC-GCCTAGTC 1252 ||| ||||||||||| ||||||||||||||||||| |||||| ||||||| | ||||| Sbjct 1248 GTATAGAAAATACACGATTGAGGAGATTGAAGAAGGAACAGAAAATTTCTCAG-ATAGTC 1306 Query 1253 GCAAGGTCGGAGAAGGAGGCTATGGACCTGTTTACAAGGGAACACTAGACTATACTA-AA 1311 |||| | |||||||| || |||||||||||||||||||| | ||||| || || | | Sbjct 1307 ACAAGATTGGAGAAGGCGGTTATGGACCTGTTTACAAGGGTATTCTAGATTACAC-ACCA 1365 Query 1312 GTGGCGATAAAAGTTCTAAGACCAGACGCGGCACAAGGAAGGTCTCAGTTCCAGCGAGAG 1371 ||||||||||||||| | ||||| || || |||||||||| || |||||||||| ||| Sbjct 1366 GTGGCGATAAAAGTTGTGAGACCGGATGCAACACAAGGAAGATCACAGTTCCAGCAAGAA 1425 Query 1372 GTTGAAGTAC-TAACCTGTATGAGACATCCAAACATGGTTCTCCTGCTTGGTGCATGTC- 1429 || ||||| | | |||||||| ||||||||||| |||||||| |||||||| || || | Sbjct 1426 GTGGAAGT-CTTGACCTGTATAAGACATCCAAATATGGTTCTGCTGCTTGGAGCCTG-CG 1483 Query 1430 CGGAATACGGATGTTTAGTCTATGAATACATGGCCAATGGTAGCTTAGACGA-CTGTCTC 1488 |||||||||| |||||||||||||||||||||||||||||||| ||||| || | ||||| Sbjct 1484 CGGAATACGGGTGTTTAGTCTATGAATACATGGCCAATGGTAGATTAGAAGATC-GTCTC 1542 Query 1489 -TTCAGACGAGGAAACTCTCCAATCCTTTCTTGGCAGCTAAGATTTCGTATAGCATCTGA 1547 || |||||||| ||||||||| | ||||| |||||||||||||| || || ||| |||| Sbjct 1543 CTT-AGACGAGGCAACTCTCCAGTGCTTTCATGGCAGCTAAGATTCCGCATTGCAGCTGA 1601 Query 1548 AATCGCAACCG-GTCTTCATTTCCTCCACCAGATGAAACCGGAGCCTTTGGTGCACCGTG 1606 |||||| || | ||||| ||||||| |||||| | ||||| ||||| | |||||||| | Sbjct 1602 AATCGCCAC-GAGTCTTAATTTCCTTCACCAGCTAAAACCAGAGCCACTAGTGCACCGCG 1660 Query 1607 ACCTT-AAACCGGGAAACATATTACTCGACCAGCATTTCGTCAGCAAGATTTCAGATGT- 1664 || || ||||| | |||||||||||| |||||||| | ||||||||||| || ||||| Sbjct 1661 AC-TTGAAACCAGCAAACATATTACTTGACCAGCACATGGTCAGCAAGATCTCTGATGTT 1719 Query 1665 GGGCTTGGCCAGACTCGTCCC---TCCATCTG-TTGCTGACA-CTGCAACCCAATATAGA 1719 ||| ||||| || || ||||| ||| | || ||| ||||| | ||| | || |||||| Sbjct 1720 GGG-TTGGCTAGGCTTGTCCCAGCTCCCT-TGGTTGATGACATC-GCATCACATTATAGA 1776 Query 1720 ATGACTTCAACCGCTGGAACATTCTTTTACATAGATCCTGAATATCAGCAGACCGGTATG 1779 ||||| || | ||||||||||| | ||| || ||||| ||||| || || || |||||| Sbjct 1777 ATGACGTCCGCTGCTGGAACATTGTGTTATATTGATCCAGAATACCAACAAACTGGTATG 1836 Query 1780 -TTGGGAACTAAGTCAGACATTTACTCATTCGGCATTATGCTTTTGCAAATACTTACAGC 1838 |||| ||| || || ||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 1837 CTTGG-AACCAAATCGGACATATACTCATTCGGGATTATGCTCTTGCAAATACTTACAGC 1895 Query 1839 TAAGCCACCAATGGGTTTAACTCA-TCACGTCGAAAAAGCCATTGAA-AAGGGAACTTTC 1896 |||||||||||||| || || | ||| || || | ||| ||||| |||| || ||| Sbjct 1896 CAAGCCACCAATGGGCTTGACA-AGTCAGGTTGAGAGAGCAATTGAGGAAGGAAATTTTT 1954 Query 1897 GCTGAGATGTTAGACCCTGCTGTTCCTGACTGGCCA-TTCGAAGAAGCCTTGGC-TGCAG 1954 ||||| | ||||||||| |||| |||| |||||| || ||||| ||||| | | || Sbjct 1955 -CTGAGGTACTAGACCCTGTTGTTGCTGATTGGCCACTT-GAAGAGGCCTTAGTATT-AG 2011 Query 1955 CAAAACTTGCTCTACAATGTGCAAAATTAAGACGCAAAGACAGACCTGACTTAGGGAACA 2014 ||||||| | | ||||||| ||| |||||| || ||||| ||||||||| | ||||| | Sbjct 2012 CAAAACTCGGTTTACAATGCGCAGCATTAAGGCGGAAAGATAGACCTGACCT-GGGAA-A 2069 Query 2015 T-T-GTTTTGCCTGAGCTTAAAAAACTCAGGGATCTAGCTGAAGAAAGCAT 2063 | | || |||||||||||||||| |||| |||| |||| ||| ||| ||| Sbjct 2070 TGTTGTGTTGCCTGAGCTTAAAAGGCTCATGGATTTAGCAGAAAAAAACAT 2120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82655831650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5