BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35380.1
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330184 jgi|Araly1|330184|fgenesh1_pm.C_scaffold_7002411 3280 0.0
Ahg342926 jgi|Araly1|342926|fgenesh1_pg.C_scaffold_3002689 667 0.0
> Ahg330184 jgi|Araly1|330184|fgenesh1_pm.C_scaffold_7002411
Length=2214
Score = 3280 bits (1776), Expect = 0.0
Identities = 2077/2220 (94%), Gaps = 30/2220 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAGAACCTCCGAGAAAAGAGAAGAAAATATTACTCTT-GCCATTGACAGAGACAA 59
||||||| ||||| ||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 1 ATGGTGAAAACCTGCGAGAAAAGAGAAGAAAGTATTAC-GTTGGCCATTGACAGAGACAA 59
Query 60 AGAGAGCCAAAACGCGTTGAAATGGGCGGTTAGCAATCTTCTTAGCCGAGGACAGACTCT 119
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 60 AGAGAGCCAAAACGCTTTGAAATGGGCGGTTACCAATCTTCTTAGCCGAGGCCAGACTCT 119
Query 120 TACTCTTCTTCATGTTAAACTCAAACAACCCTCCTCTCTTCCCTATTCTGGATCAAACTT 179
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||| |
Sbjct 120 TACTCTTCTTCATGTCAAACTCAAACAACCCTCTTCTCTTCCCTATTCCGGATCTAACCT 179
Query 180 TAGTAAGCCAGGCGATGATCCGTCAGAATTGTTTCTTCCTTTTCGTTGCTACTGTGCTAG 239
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 180 TAGTAAGCCAGGCGATGATCCGTCAGAATTGTTTCTTCCCTTCCGTTGCTATTGTGCCAG 239
Query 240 AAAAGATATCAACTGCCAAGATGTGGTTGTGGAGGACGTTAGTGCGGCTAAAGGAATAGT 299
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 240 AAAAGATATCAACTGCCAAGATGTGGTTGTAGAGGATGTTAGTGCGGCTAAAGGAATAGT 299
Query 300 TGACTACGTGCAACAGAATGCAATCGAGACTTTAATACTCGGTTCTTCGAAGATGACTCT 359
|||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 300 TGACTATGTGCAACAGAATGCAATCGAGACTCTAATACTCGGTTCATCGAAGATGACTCT 359
Query 360 TTT---AAGGTTCAAAGCAGCGGATGTTTCAAGCACTGTCATGAAAAAGGCACCGAGTTT 416
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 TTTAAGAAGGTTCAAAGCAGCGGATGTTTCAAGCACCGTCATGAAAAAGGCACCGAGTTT 419
Query 417 CTGTACAGTATATGTTATCTCTAAAGGGAAAATCTCGTTTCTGAGATCAGCTACAAGTTC 476
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CTGTACTGTATATGTTATCTCTAAAGGGAAAATCTCGTCTCTGAGATCAGCTACAAGTTC 479
Query 477 ACCTCCCCATTCCAATATGCCATCTATGCGACATCATTCACACGCTCAGACGAGCAATAT 536
|||||||||||||| |||||| |||||||||| ||| | |||||||||||||| ||| |
Sbjct 480 ACCTCCCCATTCCATTATGCCGCCTATGCGACAGCATGCTCACGCTCAGACGAGTAATCT 539
Query 537 GAATGTTGAAAGGAGGCAACAAACAATGCAAAGAACACATGATGAGATCAAGATAGAGAT 596
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 540 GAATGTTGAAAGGAGGCAACAAACAATGCAAAGAACACATGACGAGATCAAGATCGAGAT 599
Query 597 CAAAAGAGGATACGAAGGCGTTTACCAGCCCTCAATAACAGACTCTGATATATCATTTGT 656
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CAAAAGAGGATACGAAGGCGTTTACCAGCCCTCGATAACAGACTCTGATATATCATTTGT 659
Query 657 GAGTAGTGGAAGACCGAGTGTGGATCAGATGTTTCCTTCCTTGTATGACGATGTGGATGT 716
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 GAGTAGTGGAAGACCGAGTGTGGATCAGATGTTTCCTTCCTTGTATGACAATGTGGATGT 719
Query 717 TCCACGGCTCTCAGTCACCTCTGAGTATGGAGAAAATCGATTGAGTTTTGCTACAACATA 776
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||
Sbjct 720 TCCACGGCTCTCAGTCAGCTCTGAGTATGGAGAAAATCGATCCAGTTTTGCTACATCATA 779
Query 777 CTCAAAGCAGTCCATAGATCTTGGCTCACCATATGCACCAAACTCTTCAACCTCATTTGA 836
||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 780 CTCAAAGCAGTCCATAGATCTCGGCTCACCATATGCACCAAACTATTCAAGCTCATTTGA 839
Query 837 AAGTGGGAGACAATCATTTTCACTACAGGGCCAAGATGAGCTTGAAACCGAGATGAGAAG 896
|||||||||||||||||| ||||||||| |||| |||||| |||||||||||||||||||
Sbjct 840 AAGTGGGAGACAATCATTCTCACTACAGAGCCAGGATGAGATTGAAACCGAGATGAGAAG 899
Query 897 GCTGAAGATGGAGCTAAAGCATACAATGGAAATGTATAACAGTGCCTGCAAGGAAGCAAT 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCTGAAAATGGAGCTAAAGCATACAATGGAAATGTATAACAGTGCCTGCAAGGAAGCAAT 959
Query 957 CTCTGCAAAGAAAGCGGCTAACGAGTTACTCAAGTGGAAAGCAGAGAAGGAACATAAATT 1016
|||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 960 ATCTGCAAAGAAAGCGGCTAATGAGTTACACAAGTGGAAAGCAGATAAGGAACATAAATT 1019
Query 1017 AGAAGAAGTGAGACTTTCCAAGGAAGCAGCGATGGCAATGGCAGAGAGGGAGAAAGAAAA 1076
|||||| ||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 1020 AGAAGAGGTGAGACTTGCCAAGGAGGCAGCAATGGCAATGGCAGAGAGAGAGAAAGAAAA 1079
Query 1077 AAGCAGAGCAGCTATGGAAGCGGCAGTGGCAGCGCAGA-AATTATCAG-ACCTTGAAGCT 1134
| |||||||||| |||||||||||||||||||| || | ||| ||||| || ||||||||
Sbjct 1080 AGGCAGAGCAGCCATGGAAGCGGCAGTGGCAGCTCAAAGAAT-ATCAGCAC-TTGAAGCT 1137
Query 1135 GAAAAGAGAAAGCACATTGAAACCGTAGATGAAAAGAAGAGGGCGGTGTCTTCT-T--T- 1190
||||||||||||| ||||||||| |||| ||||||||||||| | |||||||| | |
Sbjct 1138 CAAAAGAGAAAGCAAATTGAAACCATAGAGGAAAAGAAGAGGGTGATGTCTTCTGTAGTG 1197
Query 1191 AA-----------GGTACAGAAAATACACTATTGAGGAGATTGAAGAAGCCACAGAAGAT 1239
|| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1198 AAAACTAATTTAAGGTACAGAAAATACAGTATTGAGGAGATTGAAGAAGCCACAGAAGAT 1257
Query 1240 TTCTCGCCTAGTCGCAAGGTCGGAGAAGGAGGCTATGGACCTGTTTACAAGGGAACACTA 1299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTCTCGCCTAGTCGCAAGGTAGGAGAAGGAGGCTATGGACCTGTTTACAAGGGAACACTA 1317
Query 1300 GACTATACTAAAGTGGCGATAAAAGTTCTAAGACCAGACGCGGCACAAGGAAGGTCTCAG 1359
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 GATTATACTAAAGTGGCAATAAAAGTTCTAAGACCAGATGCGGCACAAGGAAGGTCTCAG 1377
Query 1360 TTCCAGCGAGAGGTTGAAGTACTAACCTGTATGAGACATCCAAACATGGTTCTCCTGCTT 1419
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTCCAGCAAGAAGTTGAAGTACTAACCTGTATGAGACATCCAAACATGGTTCTCCTGCTT 1437
Query 1420 GGTGCATGTCCGGAATACGGATGTTTAGTCTATGAATACATGGCCAATGGTAGCTTAGAC 1479
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1438 GGTGCCTGTCCGGAATACGGATGTTTAGTCTACGAATACATGGCCAATGGTAGCTTAGAA 1497
Query 1480 GACTGTC-TCTTCAGACGAGGAAACTCTCCAATCCTTTCTTGGCAGCTAAGATTTCGTAT 1538
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GACTG-CATCTTCAGACGAGGAAACTCTCCAATCCTTTCTTGGCAGCTAAGATTTCGTAT 1556
Query 1539 AGCATCTGAAATCGCAACCGGTCTTCATTTCCTCCACCAGATGAAACCGGAGCCTTTGGT 1598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1557 AGCAGCTGAAATCGCAACCGGTCTTCATTTCCTCCACCAGATGAAACCGGAGCCTTTAGT 1616
Query 1599 GCACCGTGACCTTAAACCGGGAAACATATTACTCGACCAGCATTTCGTCAGCAAGATTTC 1658
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1617 GCACCGTGACCTTAAACCGGGAAACATATTACTTGACCAGCATTTTGTCAGCAAGATTTC 1676
Query 1659 AGATGTGGGCTTGGCCAGACTCGTCCCTCCATCTGTTGCTGACACTGCAACCCAATATAG 1718
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CGATGTTGGCTTGGCCAGACTCGTCCCTCCATCTGTTGCTGACACTGCAACCCAATATAG 1736
Query 1719 AATGACTTCAACCGCTGGAACATTCTTTTACATAGATCCTGAATATCAGCAGACCGGTAT 1778
|||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 1737 AATGACATCAACCGCTGGAACATTCTGTTACATAGATCCAGAGTATCAGCAGACCGGTAT 1796
Query 1779 GTTGGGAACTAAGTCAGACATTTACTCATTCGGCATTATGCTTTTGCAAATACTTACAGC 1838
|||||| ||||| ||||||||||| || |||||||||||||||||||||||| |||||||
Sbjct 1797 GTTGGGGACTAAATCAGACATTTATTCGTTCGGCATTATGCTTTTGCAAATAATTACAGC 1856
Query 1839 TAAGCCACCAATGGGTTTAACTCATCACGTCGAAAAAGCCATTGAAAAGGGAACTTTCGC 1898
|||||||||||||||||| |||||||||||||||| ||| || |||||||||||||||||
Sbjct 1857 TAAGCCACCAATGGGTTTGACTCATCACGTCGAAAGAGCAATCGAAAAGGGAACTTTCGC 1916
Query 1899 TGAGATGTTAGACCCTGCTGTTCCTGACTGGCCATTCGAAGAAGCCTTGGCTGCAGCAAA 1958
|||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||
Sbjct 1917 TGAGATGTTAGACCCTGCTGTTCCTGACTGGCCAGTCGAAGAGGCCTTGGTTGCAGCAAA 1976
Query 1959 ACTTGCTCTACAATGTGCAAAATTAAGACGCAAAGACAGACCTGACTTAGGGAACATTGT 2018
|||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1977 ACTTGCTCTAAAATGTGCAGAATTAAGACGCAAAGACAGACCTGACTTAGGGAATGTTGT 2036
Query 2019 TTTGCCTGAGCTTAAAAAACTCAGGGATCTAGCTGAAGAAAGCATTAAATTTGGTGTAAG 2078
||||||||||||||| |||||||||||| |||| |||||||||||||||||||| | |||
Sbjct 2037 TTTGCCTGAGCTTAACAAACTCAGGGATGTAGCCGAAGAAAGCATTAAATTTGGCGGAAG 2096
Query 2079 ACAGCCTTCACCGATCAGGAGCTCAGGGTCCGCGACTTCGA-TACAGGAGATTATAAGTG 2137
||||||||||| ||||||||||||||||||||||| || | ||||||||||||| ||||
Sbjct 2097 CCAGCCTTCACCAATCAGGAGCTCAGGGTCCGCGACCTC-ACTACAGGAGATTATGAGTG 2155
Query 2138 ATCCTCAGCTACAATATGGATCTGATAGCTCAAGTTTGCA-CAACAGTTCTACATCTTGA 2196
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 2156 ATCCTCAGCTACAATATGGATCTGATAGCTCAAGTAT-CAACAACAGTTCTACATCTTGA 2214
> Ahg342926 jgi|Araly1|342926|fgenesh1_pg.C_scaffold_3002689
Length=2133
Score = 667 bits (361), Expect = 0.0
Identities = 721/891 (81%), Gaps = 39/891 (4%)
Strand=Plus/Plus
Query 1194 GTACAGAAAATACACTATTGAGGAGATTGAAGAAGCCACAGAAGATTTCTC-GCCTAGTC 1252
||| ||||||||||| ||||||||||||||||||| |||||| ||||||| | |||||
Sbjct 1248 GTATAGAAAATACACGATTGAGGAGATTGAAGAAGGAACAGAAAATTTCTCAG-ATAGTC 1306
Query 1253 GCAAGGTCGGAGAAGGAGGCTATGGACCTGTTTACAAGGGAACACTAGACTATACTA-AA 1311
|||| | |||||||| || |||||||||||||||||||| | ||||| || || | |
Sbjct 1307 ACAAGATTGGAGAAGGCGGTTATGGACCTGTTTACAAGGGTATTCTAGATTACAC-ACCA 1365
Query 1312 GTGGCGATAAAAGTTCTAAGACCAGACGCGGCACAAGGAAGGTCTCAGTTCCAGCGAGAG 1371
||||||||||||||| | ||||| || || |||||||||| || |||||||||| |||
Sbjct 1366 GTGGCGATAAAAGTTGTGAGACCGGATGCAACACAAGGAAGATCACAGTTCCAGCAAGAA 1425
Query 1372 GTTGAAGTAC-TAACCTGTATGAGACATCCAAACATGGTTCTCCTGCTTGGTGCATGTC- 1429
|| ||||| | | |||||||| ||||||||||| |||||||| |||||||| || || |
Sbjct 1426 GTGGAAGT-CTTGACCTGTATAAGACATCCAAATATGGTTCTGCTGCTTGGAGCCTG-CG 1483
Query 1430 CGGAATACGGATGTTTAGTCTATGAATACATGGCCAATGGTAGCTTAGACGA-CTGTCTC 1488
|||||||||| |||||||||||||||||||||||||||||||| ||||| || | |||||
Sbjct 1484 CGGAATACGGGTGTTTAGTCTATGAATACATGGCCAATGGTAGATTAGAAGATC-GTCTC 1542
Query 1489 -TTCAGACGAGGAAACTCTCCAATCCTTTCTTGGCAGCTAAGATTTCGTATAGCATCTGA 1547
|| |||||||| ||||||||| | ||||| |||||||||||||| || || ||| ||||
Sbjct 1543 CTT-AGACGAGGCAACTCTCCAGTGCTTTCATGGCAGCTAAGATTCCGCATTGCAGCTGA 1601
Query 1548 AATCGCAACCG-GTCTTCATTTCCTCCACCAGATGAAACCGGAGCCTTTGGTGCACCGTG 1606
|||||| || | ||||| ||||||| |||||| | ||||| ||||| | |||||||| |
Sbjct 1602 AATCGCCAC-GAGTCTTAATTTCCTTCACCAGCTAAAACCAGAGCCACTAGTGCACCGCG 1660
Query 1607 ACCTT-AAACCGGGAAACATATTACTCGACCAGCATTTCGTCAGCAAGATTTCAGATGT- 1664
|| || ||||| | |||||||||||| |||||||| | ||||||||||| || |||||
Sbjct 1661 AC-TTGAAACCAGCAAACATATTACTTGACCAGCACATGGTCAGCAAGATCTCTGATGTT 1719
Query 1665 GGGCTTGGCCAGACTCGTCCC---TCCATCTG-TTGCTGACA-CTGCAACCCAATATAGA 1719
||| ||||| || || ||||| ||| | || ||| ||||| | ||| | || ||||||
Sbjct 1720 GGG-TTGGCTAGGCTTGTCCCAGCTCCCT-TGGTTGATGACATC-GCATCACATTATAGA 1776
Query 1720 ATGACTTCAACCGCTGGAACATTCTTTTACATAGATCCTGAATATCAGCAGACCGGTATG 1779
||||| || | ||||||||||| | ||| || ||||| ||||| || || || ||||||
Sbjct 1777 ATGACGTCCGCTGCTGGAACATTGTGTTATATTGATCCAGAATACCAACAAACTGGTATG 1836
Query 1780 -TTGGGAACTAAGTCAGACATTTACTCATTCGGCATTATGCTTTTGCAAATACTTACAGC 1838
|||| ||| || || ||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1837 CTTGG-AACCAAATCGGACATATACTCATTCGGGATTATGCTCTTGCAAATACTTACAGC 1895
Query 1839 TAAGCCACCAATGGGTTTAACTCA-TCACGTCGAAAAAGCCATTGAA-AAGGGAACTTTC 1896
|||||||||||||| || || | ||| || || | ||| ||||| |||| || |||
Sbjct 1896 CAAGCCACCAATGGGCTTGACA-AGTCAGGTTGAGAGAGCAATTGAGGAAGGAAATTTTT 1954
Query 1897 GCTGAGATGTTAGACCCTGCTGTTCCTGACTGGCCA-TTCGAAGAAGCCTTGGC-TGCAG 1954
||||| | ||||||||| |||| |||| |||||| || ||||| ||||| | | ||
Sbjct 1955 -CTGAGGTACTAGACCCTGTTGTTGCTGATTGGCCACTT-GAAGAGGCCTTAGTATT-AG 2011
Query 1955 CAAAACTTGCTCTACAATGTGCAAAATTAAGACGCAAAGACAGACCTGACTTAGGGAACA 2014
||||||| | | ||||||| ||| |||||| || ||||| ||||||||| | ||||| |
Sbjct 2012 CAAAACTCGGTTTACAATGCGCAGCATTAAGGCGGAAAGATAGACCTGACCT-GGGAA-A 2069
Query 2015 T-T-GTTTTGCCTGAGCTTAAAAAACTCAGGGATCTAGCTGAAGAAAGCAT 2063
| | || |||||||||||||||| |||| |||| |||| ||| ||| |||
Sbjct 2070 TGTTGTGTTGCCTGAGCTTAAAAGGCTCATGGATTTAGCAGAAAAAAACAT 2120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82655831650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5