BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35390.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330185 jgi|Araly1|330185|fgenesh1_pm.C_scaffold_7002412 2950 0.0
> Ahg330185 jgi|Araly1|330185|fgenesh1_pm.C_scaffold_7002412
Length=1974
Score = 2950 bits (1597), Expect = 0.0
Identities = 1863/1991 (94%), Gaps = 19/1991 (1%)
Strand=Plus/Plus
Query 46 ATGCCTCCCATGCAGGCGCGTACCCTCAGCGTATACAACGTCATGGTACCACTAGTATGT 105
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCCTCCCATGCAGGCGCGTTCCTTCAGCATATACAACGTCATGGTACCACTAGTATGT 60
Query 106 CTCCTCCTTTTCTTCTCCACACCCACTCATGGTCTTTCAGATTCTGAGGCTATCCTCAAG 165
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 CTCCTCCTTTTCTTCTCCACACCCACTCATGGTCTTTCGGATTCCGAGGCTATCCTCAAG 120
Query 166 TTCAAGGAATCTTTAGTTGTTGGGCAGGAAAACGCGTTGGCCTCATGGAATGCTAAAAGT 225
|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 121 TTCAAGAAATCTTTAGTTGTTGGGCAGGAAAACGCGTTGGCCTCCTGGGATGCTAAAACT 180
Query 226 CCTCCTTGCACTTGGTCTGGTGTCTTGTGCAATGGCGGCTCCGTCTGGAGACTGCAGATG 285
||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 181 CCTCCCTGCACTTGGCCTGGTGTCTTGTGCAATAGCGGCTCCGTCTGGGGACTGCAGATG 240
Query 286 GAGAACTTGGAGCTTTCTGGTTCTATAGACATCGAGGCATTGTCGGGTTTGACATCCTTG 345
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 GAGAATTTGGAGCTTTCTGGTTCCATAGACATTGAGGCATTGTCGGGTTTGACATCCTTG 300
Query 346 AGGACTCTAAGCTTCATGAACAACAAGTTTGAAGGGCCATTCCCTGACTTCAAGAAACTC 405
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 301 AGGACTCTAAGCTTCATGAACAACAAGTTCGGAGGGCCATTCCCTGAGTTCAAGAAACTC 360
Query 406 GCTGCTCTCAAGTCACTCTACCTGTCAAACAATCAATTCGGAGGAGATATACCAGGGGAT 465
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 361 GCTGCTCTCAAGTCACTCTACCTGTCTAACAATCAATTCGGAGGAGATATACCAGGGAAT 420
Query 466 GCTTTTGAAGGTATGGGGTGGTTGAAGAAGGTCCATTTGGCACAAAACAAGTTTACCGGT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTTTGAAGGTATGGGGTGGTTGAAGAAGGTCCATTTGGCACAAAACAAGTTTACCGGT 480
Query 526 CAAATTCCGTCATCTGTGGCCAAATTGCCCAAGCTTTTAGAACTGAGACTTGACGGGAAC 585
|||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GAAATCCCGACCTCTGTGGCCAAATTGCCCAAGCTCTTAGAACTGAGACTTGACGGGAAC 540
Query 586 CAATTCACTGGAGAGATACCAGAGTTTGAACATCAGCTACACTTGTTAAACCTTTCAAAC 645
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CAATTCACTGGACAAATACCAGAGTTTGAACATCAGCTACACTTGTTAAACCTTTCAAAC 600
Query 646 AATGCATTAACAGGTCCAATACCAGAGAGTCTCAGCATGACAGATCCAAAGGTGTTTGAA 705
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 601 AATGCATTAACAGGTCCAATCCCTGAGAGTCTCAGCATGATAGATCCAAAGGTGTTTGAA 660
Query 706 GGTAACAAAGGCTTATATGGAAAACCGCTGGAAACAGAATGTGATTCTCCTTATATAGAA 765
||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 661 GGTAATAAAGGCTTATGTGGAAAACCGCTGGAAACAGAATGTGATTCTCCTTCTAGAGAG 720
Query 766 CATCCTCCACAGTCTGAGGCACGACC-CAAATCATCATCAAGGGGACCTCTCGTTATAAC 824
| ||||||||| ||| || |||||| | |||||||||||||||| || |||||||||||
Sbjct 721 CTTCCTCCACAACCTGGGGTACGACCTC-AATCATCATCAAGGGGGCCCCTCGTTATAAC 779
Query 825 AGCAATAGTCGCGGCCTTGACAATACTCATAATCCTTGGAGTGATCTTCTTGCTTAACCG 884
|||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 GGCAATAGTTGCGGCCCTGACAATACTCATAATCCTTGGAGTGATCATCTTGCTTAACCG 839
Query 885 CAGCTATAAGAATAAAAAACCGCGTTTGGCGGTGGAAACCGGACCATCAAGTCTACAGAA 944
|| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 840 CAACTATAGGAATAAACAACCGCGTTTGGTGGTGGAAAACGGACCATCAAGTCTACAGAA 899
Query 945 GAAAACCGGCATCCGAGAAGCAGACCAAAGTCGTAGAG-ACAGAAAGAAAGCCGACCACC 1003
||||||| ||||||||||||| |||||||| || |||| || || ||||||||||||| |
Sbjct 900 GAAAACCAGCATCCGAGAAGCGGACCAAAGCCGGAGAGAAC-GACAGAAAGCCGACCATC 958
Query 1004 GGAAAGGCTCAGGCACTACTAAGAGGATGGGTGCAGCAGCTGGAGTGGAGAACACAAAGC 1063
|||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 959 GGAATGGCTCAGGCACTACTAAAAGGATGGGTACAGCAGCTGGAGTGGAGAACACAAAGC 1018
Query 1064 TTTCATTCTTGAGGGAAGATAGGGAAAAATTTGACCTGCAAGATCTGTTGAAGGCTTCGG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 TTTCATTCTTGAGGGAAGATAGGGAAAAATTTGACCTGCAAGATCTGTTGAAGGCTTCAG 1078
Query 1124 CCGAGATACTTGGAAGTGGATGTTTTGGAGCATCTTATAAAGCAGTGCTATCAAGCGGAC 1183
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 CTGAGATACTTGGAAGTGGATGTTTTGGAGCATCCTATAAAGCAGTGCTATCAAGCGGAC 1138
Query 1184 AAATGATGGTCGTGAAGAGGTTCAAGCAGATGAACAATGCAGGGAGGGATGAGTTTCAAG 1243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1139 AAATGATGGTCGTGAAGAGGTTCAAGCAGATGAATAATGCAGGGAGGGATGAGTTTCAAG 1198
Query 1244 AGCACATGAAAAGATTAGGGAGGTTAATGCACCATAATCTGCTTTCCATTGTGGCTTATT 1303
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1199 AGCACATGAAAAGATTAGGGAGGTTAAGGCACCATAATCTGCTTCCCATTGTGGCTTATT 1258
Query 1304 ACTATAGGAAGGAGGAAAAGCTTTTAGTATGTGATTTTGCTGAGAGAGGAAGCTTGGCTA 1363
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1259 ACTATAGGAAGGAGGAAAAGCTATTGGTATGTGATTTTGCTGAGAGAGGAAGCTTGGCTG 1318
Query 1364 TTAATCTTCATAGTAATCAATCGTTAGGAAAACCAAGTTTGGACTGGCCAACAAGATTGA 1423
||||||||||||| | | || ||||||||||||||||||||||||||||
Sbjct 1319 TTAATCTTCATAG---------G--A--AA--CCAAGTTTGGACTGGCCAACAAGATTGA 1363
Query 1424 AGATCGTGAAGGGAGTTGCAAAGGGGTTGTTCTATCTCCACCAAGACCTACCTAGCCTAA 1483
|||||||||| |||||||||| |||| |||| |||||||||||||| |||||||| ||||
Sbjct 1364 AGATCGTGAAAGGAGTTGCAAGGGGGCTGTTATATCTCCACCAAGATCTACCTAGACTAA 1423
Query 1484 TGGCTCCACATGGTCACCTCAAATCCTCCAACGTTCTTCTCACCAAAACATTTGAACCAC 1543
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1424 TGGCTCCACATGGTCATCTCAAATCCTCCAACGTTCTCCTCACCAAAACCTTTGAACCAC 1483
Query 1544 TTCTCACAGACTATGGATTAATTCCGTTGATCAACCAAGAGAAGGCACAAATGCACATGG 1603
|||||||||||||||| ||||||||| || |||||||||||||||||||| |||| ||||
Sbjct 1484 TTCTCACAGACTATGGCTTAATTCCGGTGCTCAACCAAGAGAAGGCACAAGTGCATATGG 1543
Query 1604 CGGCCTATAGATCTCCAGAGTATTTGCAACATCGACGTATCACCAAGAAAACCGATGTAT 1663
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1544 CAGCCTATAGATCTCCAGAGTATTTGCAACACCGACGTATCACCAAGAAAACCGATGTTT 1603
Query 1664 GGGGGCTTGGCATACTTATCTTGGAGATCCTAACGGGAAAATTCCCGGCTAATTTCTCAC 1723
|||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1604 GGGGGCTTGGCATACTCATCCTGGAGATCCTAACGGGAAAATTCCCACCTAATTTCTCAC 1663
Query 1724 AAAGTAGTGAAGAGGATTTAGCGAGTTGGGTGAACTCGGGTTTCCATGGGGTATGGGCAC 1783
|| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1664 AAGGTAGTGAAGAGGATTTAGCGAGTTGGGTGAACTCGGGTTTCCATGGAGTAGGGGCAC 1723
Query 1784 CAAGTTTGTTTGATAAGGGTATGGGGAAGACAAGCCATTGTGAAGGACAGATTCTCAAAC 1843
||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1724 CAAATTTGCTTGATAAGGGGATGGGCAAGACAAGCCATTGTGAAGGACAGATTCTTAAAC 1783
Query 1844 TCTTGACGATCGGATTGAACTGTTGTGAACCCGACGTGGAGAAAAGGTTGGACATAGGAC 1903
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1784 TCTTGAGGATCGGATTGAGCTGTTGTGAACCCGATGTGGAGAAAAGGTTGGACATAGGAC 1843
Query 1904 AGGCTGTGGAGAAGATCGAAGAGTTGAAGGAGCGAGAAGGGGATGATGACGACTTCTACT 1963
|||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1844 AGGCTGTGGAGAAGATTGAAGTGTTGAAGGAGCGGGAAGGGGATGATGACGACTTCTACT 1903
Query 1964 CAACGTATGTGAGTGAAACTGATGGTAGGTCGTCTAAAGGAGAGTCATGCGAGAGTATCA 2023
||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||
Sbjct 1904 CAACGTATGTGAGTGAAACTGATGGGAGGTCATCTAAAGGAGTGTCAAGCGAGAGTATCA 1963
Query 2024 GCTTTGCATGA 2034
|||||||||||
Sbjct 1964 GCTTTGCATGA 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5