BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35390.1 Length=2034 Score E Sequences producing significant alignments: (Bits) Value Ahg330185 jgi|Araly1|330185|fgenesh1_pm.C_scaffold_7002412 2950 0.0 > Ahg330185 jgi|Araly1|330185|fgenesh1_pm.C_scaffold_7002412 Length=1974 Score = 2950 bits (1597), Expect = 0.0 Identities = 1863/1991 (94%), Gaps = 19/1991 (1%) Strand=Plus/Plus Query 46 ATGCCTCCCATGCAGGCGCGTACCCTCAGCGTATACAACGTCATGGTACCACTAGTATGT 105 ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGCCTCCCATGCAGGCGCGTTCCTTCAGCATATACAACGTCATGGTACCACTAGTATGT 60 Query 106 CTCCTCCTTTTCTTCTCCACACCCACTCATGGTCTTTCAGATTCTGAGGCTATCCTCAAG 165 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 61 CTCCTCCTTTTCTTCTCCACACCCACTCATGGTCTTTCGGATTCCGAGGCTATCCTCAAG 120 Query 166 TTCAAGGAATCTTTAGTTGTTGGGCAGGAAAACGCGTTGGCCTCATGGAATGCTAAAAGT 225 |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 121 TTCAAGAAATCTTTAGTTGTTGGGCAGGAAAACGCGTTGGCCTCCTGGGATGCTAAAACT 180 Query 226 CCTCCTTGCACTTGGTCTGGTGTCTTGTGCAATGGCGGCTCCGTCTGGAGACTGCAGATG 285 ||||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 181 CCTCCCTGCACTTGGCCTGGTGTCTTGTGCAATAGCGGCTCCGTCTGGGGACTGCAGATG 240 Query 286 GAGAACTTGGAGCTTTCTGGTTCTATAGACATCGAGGCATTGTCGGGTTTGACATCCTTG 345 ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 241 GAGAATTTGGAGCTTTCTGGTTCCATAGACATTGAGGCATTGTCGGGTTTGACATCCTTG 300 Query 346 AGGACTCTAAGCTTCATGAACAACAAGTTTGAAGGGCCATTCCCTGACTTCAAGAAACTC 405 ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| Sbjct 301 AGGACTCTAAGCTTCATGAACAACAAGTTCGGAGGGCCATTCCCTGAGTTCAAGAAACTC 360 Query 406 GCTGCTCTCAAGTCACTCTACCTGTCAAACAATCAATTCGGAGGAGATATACCAGGGGAT 465 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 361 GCTGCTCTCAAGTCACTCTACCTGTCTAACAATCAATTCGGAGGAGATATACCAGGGAAT 420 Query 466 GCTTTTGAAGGTATGGGGTGGTTGAAGAAGGTCCATTTGGCACAAAACAAGTTTACCGGT 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GCTTTTGAAGGTATGGGGTGGTTGAAGAAGGTCCATTTGGCACAAAACAAGTTTACCGGT 480 Query 526 CAAATTCCGTCATCTGTGGCCAAATTGCCCAAGCTTTTAGAACTGAGACTTGACGGGAAC 585 |||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 481 GAAATCCCGACCTCTGTGGCCAAATTGCCCAAGCTCTTAGAACTGAGACTTGACGGGAAC 540 Query 586 CAATTCACTGGAGAGATACCAGAGTTTGAACATCAGCTACACTTGTTAAACCTTTCAAAC 645 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CAATTCACTGGACAAATACCAGAGTTTGAACATCAGCTACACTTGTTAAACCTTTCAAAC 600 Query 646 AATGCATTAACAGGTCCAATACCAGAGAGTCTCAGCATGACAGATCCAAAGGTGTTTGAA 705 |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||| Sbjct 601 AATGCATTAACAGGTCCAATCCCTGAGAGTCTCAGCATGATAGATCCAAAGGTGTTTGAA 660 Query 706 GGTAACAAAGGCTTATATGGAAAACCGCTGGAAACAGAATGTGATTCTCCTTATATAGAA 765 ||||| |||||||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 661 GGTAATAAAGGCTTATGTGGAAAACCGCTGGAAACAGAATGTGATTCTCCTTCTAGAGAG 720 Query 766 CATCCTCCACAGTCTGAGGCACGACC-CAAATCATCATCAAGGGGACCTCTCGTTATAAC 824 | ||||||||| ||| || |||||| | |||||||||||||||| || ||||||||||| Sbjct 721 CTTCCTCCACAACCTGGGGTACGACCTC-AATCATCATCAAGGGGGCCCCTCGTTATAAC 779 Query 825 AGCAATAGTCGCGGCCTTGACAATACTCATAATCCTTGGAGTGATCTTCTTGCTTAACCG 884 |||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 780 GGCAATAGTTGCGGCCCTGACAATACTCATAATCCTTGGAGTGATCATCTTGCTTAACCG 839 Query 885 CAGCTATAAGAATAAAAAACCGCGTTTGGCGGTGGAAACCGGACCATCAAGTCTACAGAA 944 || ||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||| Sbjct 840 CAACTATAGGAATAAACAACCGCGTTTGGTGGTGGAAAACGGACCATCAAGTCTACAGAA 899 Query 945 GAAAACCGGCATCCGAGAAGCAGACCAAAGTCGTAGAG-ACAGAAAGAAAGCCGACCACC 1003 ||||||| ||||||||||||| |||||||| || |||| || || ||||||||||||| | Sbjct 900 GAAAACCAGCATCCGAGAAGCGGACCAAAGCCGGAGAGAAC-GACAGAAAGCCGACCATC 958 Query 1004 GGAAAGGCTCAGGCACTACTAAGAGGATGGGTGCAGCAGCTGGAGTGGAGAACACAAAGC 1063 |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 959 GGAATGGCTCAGGCACTACTAAAAGGATGGGTACAGCAGCTGGAGTGGAGAACACAAAGC 1018 Query 1064 TTTCATTCTTGAGGGAAGATAGGGAAAAATTTGACCTGCAAGATCTGTTGAAGGCTTCGG 1123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1019 TTTCATTCTTGAGGGAAGATAGGGAAAAATTTGACCTGCAAGATCTGTTGAAGGCTTCAG 1078 Query 1124 CCGAGATACTTGGAAGTGGATGTTTTGGAGCATCTTATAAAGCAGTGCTATCAAGCGGAC 1183 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1079 CTGAGATACTTGGAAGTGGATGTTTTGGAGCATCCTATAAAGCAGTGCTATCAAGCGGAC 1138 Query 1184 AAATGATGGTCGTGAAGAGGTTCAAGCAGATGAACAATGCAGGGAGGGATGAGTTTCAAG 1243 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1139 AAATGATGGTCGTGAAGAGGTTCAAGCAGATGAATAATGCAGGGAGGGATGAGTTTCAAG 1198 Query 1244 AGCACATGAAAAGATTAGGGAGGTTAATGCACCATAATCTGCTTTCCATTGTGGCTTATT 1303 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 1199 AGCACATGAAAAGATTAGGGAGGTTAAGGCACCATAATCTGCTTCCCATTGTGGCTTATT 1258 Query 1304 ACTATAGGAAGGAGGAAAAGCTTTTAGTATGTGATTTTGCTGAGAGAGGAAGCTTGGCTA 1363 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1259 ACTATAGGAAGGAGGAAAAGCTATTGGTATGTGATTTTGCTGAGAGAGGAAGCTTGGCTG 1318 Query 1364 TTAATCTTCATAGTAATCAATCGTTAGGAAAACCAAGTTTGGACTGGCCAACAAGATTGA 1423 ||||||||||||| | | || |||||||||||||||||||||||||||| Sbjct 1319 TTAATCTTCATAG---------G--A--AA--CCAAGTTTGGACTGGCCAACAAGATTGA 1363 Query 1424 AGATCGTGAAGGGAGTTGCAAAGGGGTTGTTCTATCTCCACCAAGACCTACCTAGCCTAA 1483 |||||||||| |||||||||| |||| |||| |||||||||||||| |||||||| |||| Sbjct 1364 AGATCGTGAAAGGAGTTGCAAGGGGGCTGTTATATCTCCACCAAGATCTACCTAGACTAA 1423 Query 1484 TGGCTCCACATGGTCACCTCAAATCCTCCAACGTTCTTCTCACCAAAACATTTGAACCAC 1543 |||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1424 TGGCTCCACATGGTCATCTCAAATCCTCCAACGTTCTCCTCACCAAAACCTTTGAACCAC 1483 Query 1544 TTCTCACAGACTATGGATTAATTCCGTTGATCAACCAAGAGAAGGCACAAATGCACATGG 1603 |||||||||||||||| ||||||||| || |||||||||||||||||||| |||| |||| Sbjct 1484 TTCTCACAGACTATGGCTTAATTCCGGTGCTCAACCAAGAGAAGGCACAAGTGCATATGG 1543 Query 1604 CGGCCTATAGATCTCCAGAGTATTTGCAACATCGACGTATCACCAAGAAAACCGATGTAT 1663 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1544 CAGCCTATAGATCTCCAGAGTATTTGCAACACCGACGTATCACCAAGAAAACCGATGTTT 1603 Query 1664 GGGGGCTTGGCATACTTATCTTGGAGATCCTAACGGGAAAATTCCCGGCTAATTTCTCAC 1723 |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1604 GGGGGCTTGGCATACTCATCCTGGAGATCCTAACGGGAAAATTCCCACCTAATTTCTCAC 1663 Query 1724 AAAGTAGTGAAGAGGATTTAGCGAGTTGGGTGAACTCGGGTTTCCATGGGGTATGGGCAC 1783 || |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1664 AAGGTAGTGAAGAGGATTTAGCGAGTTGGGTGAACTCGGGTTTCCATGGAGTAGGGGCAC 1723 Query 1784 CAAGTTTGTTTGATAAGGGTATGGGGAAGACAAGCCATTGTGAAGGACAGATTCTCAAAC 1843 ||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 1724 CAAATTTGCTTGATAAGGGGATGGGCAAGACAAGCCATTGTGAAGGACAGATTCTTAAAC 1783 Query 1844 TCTTGACGATCGGATTGAACTGTTGTGAACCCGACGTGGAGAAAAGGTTGGACATAGGAC 1903 |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1784 TCTTGAGGATCGGATTGAGCTGTTGTGAACCCGATGTGGAGAAAAGGTTGGACATAGGAC 1843 Query 1904 AGGCTGTGGAGAAGATCGAAGAGTTGAAGGAGCGAGAAGGGGATGATGACGACTTCTACT 1963 |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| Sbjct 1844 AGGCTGTGGAGAAGATTGAAGTGTTGAAGGAGCGGGAAGGGGATGATGACGACTTCTACT 1903 Query 1964 CAACGTATGTGAGTGAAACTGATGGTAGGTCGTCTAAAGGAGAGTCATGCGAGAGTATCA 2023 ||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||||| Sbjct 1904 CAACGTATGTGAGTGAAACTGATGGGAGGTCATCTAAAGGAGTGTCAAGCGAGAGTATCA 1963 Query 2024 GCTTTGCATGA 2034 ||||||||||| Sbjct 1964 GCTTTGCATGA 1974 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76485211960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5