BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35400.2
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947180 jgi|Araly1|947180|scaffold_703409.1 1635 0.0
> Ahg947180 jgi|Araly1|947180|scaffold_703409.1
Length=1304
Score = 1635 bits (885), Expect = 0.0
Identities = 989/1039 (95%), Gaps = 8/1039 (1%)
Strand=Plus/Plus
Query 10 CGGCTTAGGTCAATCAGACAATGGCGAGCAGAGTTTACGTTCATTACCACCACGCCGATG 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGCTTAGGTCAATCAGACAATGGCGAGCAGAGTTTACGTTCATTACCACCACGCCGATG 60
Query 70 CCTGTAGCAAAGCTCGCTGGAACGCCAGAGAGACATTTAGGTTTATGTATGATAGGCCTT 129
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 61 CCTGTAGCAAAGCTCGCTGGAACGCCAGAGAAACCTTTAGGTTTATGTATGATAGGCCTT 120
Query 130 GGCAACATGTTCTTGACTTCTACTCAAATGCAGTGGAAGGGAATCTTTCTGTCCTGAGTT 189
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 121 GGAAACATGTTCTTGATTTCTACTCAAACGCAGTGGAAGGGAATCTTTCTGTCCTGAATC 180
Query 190 TGTTTCAGCCTAAAAAATCTTTGGTTCATGATGATGGGATAA-CTGAAGAGATG-CTTCT 247
||||||||||||||||||||||||| |||||||||||||||| | ||||||||| || ||
Sbjct 181 TGTTTCAGCCTAAAAAATCTTTGGTACATGATGATGGGATAAAC-GAAGAGATGTCT-CT 238
Query 248 TGAATCGGAACCGGAGACTTCTACTCGGAAAGACGGGAGGTCGGGGAGGTGGGAAAGAGT 307
|||| ||||| | |||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct 239 TGAAACGGAATCAGAGACTTCTACTAGAAAAGACGGGAGGTCTGGGAGGTGGGAAAGAGT 298
Query 308 GAATTTCAAGATCGTTCTTTCGTATAATGGGGCTTCTTTTGATGGATGGCAGAAACAGCC 367
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 299 GAATTTCAAGATCGTGCTTTCGTACAATGGGACTTCTTTTGATGGATGGCAGAAACAGCC 358
Query 368 TGACTTACATACTGTTCAGGGTGTAGTAGAGAAGTCTCTAGGGGGATTTGTTGATGAAAG 427
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 TGACTTACATACTGTTCAGGGTGTAGTAGAGAAGTCTCTCGGGGGATTTGTTGATGAAAG 418
Query 428 GAAAGCTCAACTGCTCAAGAAAAAATGTAAACCATTAGAAGGACGTGTACTTGTCGCTGG 487
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 419 GAAAGCCCAACTGCTCAAGAAAAAATGTAAACCATTGGAAGGACGTGTACTTGTTGCTGG 478
Query 488 AAGAACCGATAAAGGAGTGTCTGCTCTTAATCAAGTTTGTTCTTTCTATACATGGAGAAA 547
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGAACCGACAAAGGAGTGTCTGCTCTTAATCAAGTTTGTTCTTTCTATACATGGAGAAA 538
Query 548 AGACATTGAACCCATTGCTATTGAAGATGCTATCAATAAAGATGCTTCTGGGAAGCTAAG 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 AGACATTGAACCCATTGCTATTGAAGATGCTATCAATAAAGATGCTTCTGGGAAACTAAG 598
Query 608 GGTTGTATCAATCTCTAAGGTTTCCCGTTCATTTCACCCAAATTTCTCGGCAAAATGGAG 667
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 599 GGTTGTGTCAATCTCTAAGGTTTCCCGATCATTTCACCCAAATTTCTCTGCAAAATGGAG 658
Query 668 GCGCTACTTGTATATCTTCCCCTTGGATGATGCTGAGCCATTGCGA-AAAAGTGGCGAGA 726
|||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
Sbjct 659 GCGCTACTTGTATATCTTTCCCTTGGATGATGCTGAGCCATTGC-ACAAAAGTGGCGAAA 717
Query 727 ATCATGAGAACTTTATCTTTGATGAGAACAA-GAAAAAGCAAAGAAATGGACTCTTAAGT 785
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 718 ATCATGAGAACTTCATCTTTGATGAGAACAATGAAAA-GCAAAGAAATGGACTCTTAAGT 776
Query 786 GAAGAGATTGCTGAAGAAGTAATAATGAGCGAGGATGATGAGCTTGAAATTGAGGAAACC 845
||||||| | |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 777 GAAGAGAATACTGAAGAAGTAATATTGAGCGAGGATGATGAGATTGAAATTGAGGAAACC 836
Query 846 AGCAATGCGCTTGAAGTAGTAGAAAAACCAAGTGACTTTAGTGTAAGCAAGGTTGATCAA 905
||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 837 AGCAATGGGCTTGAAGTAGTTGAAAAACCAAGTGACTTCAGTATAAGCAAGGTTGATCAA 896
Query 906 CTTTTGCAGCACCTTCAAGGAAAAGTATTATCCTACAAGATGTTTGCGCGTGATACAAAA 965
||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 897 CTTTTACAGCAGCTTCAAGGAAAAGTATTATCCTACAAGACGTTTGCGCGTGATACAAAA 956
Query 966 GCTGCAAGAAACGAAGGTCCGCCTACAGAATGTTTTATGTACCATGCACGGGCAGCCGAA 1025
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GCTGCAAGAAACGAAGGTCCGCCTACAGAATGTTTTATGTACCATGCACGGGCAGCCGAG 1016
Query 1026 ATTAGATTGTCCAGTTCTG 1044
|||||||||||| ||||||
Sbjct 1017 ATTAGATTGTCCTGTTCTG 1035
Score = 462 bits (250), Expect = 3e-129
Identities = 264/271 (97%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 1196 TGACTGTGTGGAAGGAAGAAGGGTTATGTGTGTTGAGCTTGTGGCTAACCGATTTCTCCG 1255
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1034 TGACTGTGTGGAAGGGAGAAGGGTTATGTGTGTTGAGCTTGTCGCTAACCGATTTCTCCG 1093
Query 1256 CAAGATGGTTCGAGTTCTTGTGGCAACATCAATCCGAGAAGCTGCCGCTGGTGCGGAAGA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1094 CAAGATGGTTCGAGTTCTTGTGGCAACATCAATCCGAGAAGCTGCCGCTGGTGCAGAAAA 1153
Query 1316 TGATGCATTGTTAAAACTGCTAGAAGCTTCATGCAGACGAGCCACAGCTCCTCCAGCTCC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TGATGCATTGTTAAAACTGCTAGAAGCTTCATGCAGACGAGCCACAGCTCCTCCAGCTCC 1213
Query 1376 ATCTGAAGGTCTCTGTCTATTCGACGTTGGTTATACTGACTTTGACCCTCAAACTTCTCT 1435
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1214 ATCTGAAGGTCTCTGTCTATTCGACGTTGGTTATGCTGACTTTGACCCTCAAACTTCTCT 1273
Query 1436 CATTTCCTGAGAATGGCATGTTACATTTACT 1466
|||||| ||||||||||||||||||| ||||
Sbjct 1274 CATTTCGTGAGAATGGCATGTTACATGTACT 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61515745675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5