BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35410.1 Length=1757 Score E Sequences producing significant alignments: (Bits) Value Ahg947182 jgi|Araly1|947182|scaffold_703411.1 2259 0.0 > Ahg947182 jgi|Araly1|947182|scaffold_703411.1 Length=1382 Score = 2259 bits (1223), Expect = 0.0 Identities = 1329/1382 (96%), Gaps = 0/1382 (0%) Strand=Plus/Plus Query 161 TCTGATAAAAGTTTGTAAAGAATGACAAAGAAAATGAGAAGAGTGGGCAAGTACGAGGTT 220 |||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 1 TCTGGTAAAAATTTGTAAAGAATGACAAAGAAAATGAGGAGAGTGGGGAAGTACGAGGTT 60 Query 221 GGTCGCACAATAGGTGAAGGAACCTTTGCTAAGGTTAAGTTTGCGAGGAACACAGACACT 280 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTCGCACGGTAGGTGAAGGAACCTTTGCTAAGGTTAAGTTTGCGAGGAACACAGACACT 120 Query 281 GGTGATAATGTAGCCATCAAAATTATGGCTAAGAGTACAATACTTAAGAACAGAATGGTT 340 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTGAAAATGTTGCCATCAAAATTATGGCTAAGAGTACAATACTTAAGAACAGAATGGTT 180 Query 341 GATCAGATAAAAAGAGAGATATCTATAATGAAGATTGTTCGTCACCCGAACATAGTGAGG 400 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 181 GATCAGATAAAAAGAGAGATATCTATAATGAAGATTGTCCGTCACCCTAACATAGTGAGG 240 Query 401 TTGTATGAGGTGTTGGCGAGTCCTTCGAAAATATATATAGTTTTGGAGTTTGTGACAGGA 460 ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 TTGTATGAGGTCTTGGCAAGTCCTTCAAAAATATATATAGTTTTGGAGTTTGTGACAGGA 300 Query 461 GGAGAGCTCTTTGATAGAATTGTTCATAAAGGGAGGCTTGAAGAAAGTGAGTCTCGGAAA 520 |||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| ||| Sbjct 301 GGAGAGCTCTTTGATAGAATTGTTCACAATGGGAGACTTGAAGAAAGTGATTCTCGCAAA 360 Query 521 TACTTTCAACAGCTTGTAGATGCTGTTGCTCATTGTCACTGCAAGGGTGTTTACCACCGT 580 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 361 TACTTTCAACAGCTTGTAGATGCTATTGCTCATTGTCATTGCAAGGGTGTTTACCACCGT 420 Query 581 GACCTAAAGCCAGAAAATCTTTTACTCGATACAAATGGAAATCTGAAGGTTTCGGATTTC 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GACCTAAAGCCAGAAAATCTTTTACTCGATACAAATGGAAATCTGAAGGTTTCGGATTTC 480 Query 641 GGACTCAGTGCATTGCCTCAGGAAGGAGTAGAACTTCTGCGTACCACATGTGGAACTCCG 700 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 481 GGACTCAGTGCATTGCCTCAGCAAGGAGTAGAACTTCTGCGCACCACATGTGGAACTCCG 540 Query 701 AACTATGTAGCTCCAGAGGTACTTAGTGGACAGGGTTACGATGGTTCAGCAGCTGATATT 760 |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 541 AACTATGTAGCTCCTGAGGTACTTAGTGGCCAGGGTTACGATGGTTCAGCAGCAGATATT 600 Query 761 TGGTCTTGCGGGGTTATTCTTTTCGTTATATTGGCTGGATATTTACCTTTTTCCGAGACG 820 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 601 TGGTCTTGCGGGGTTATTCTTTTCGTTATATTGGCTGGATATTTACCCTTTTCTGAGACG 660 Query 821 GATCTTCCAGGGTTGTACAGAAAAATAAATGCAGCAGAGTTTTCTTGTCCACCGTGGTTT 880 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 661 GATCTTCCAGGGTTGTACAGAAAAATAAATGCAGCAGAATTTTCTTGTCCACCATGGTTT 720 Query 881 TCCGCAGAAGTGAAGTTTTTAATACATAGGATACTTGACCCCAATCCCAAAACACGTATT 940 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 721 TCTGCAGAAGTGAAGTTTTTAATTCATAGGATACTTGACCCCAATCCCAAAACACGTATT 780 Query 941 CAAATTCAAGGAATCAAGAAAGATCCTTGGTTCAGATTAAATTATGTGCCTATACGAGCA 1000 |||||||||||||||| ||||||||||||||||||| |||||||||||||||| || ||| Sbjct 781 CAAATTCAAGGAATCAGGAAAGATCCTTGGTTCAGAATAAATTATGTGCCTATCCGGGCA 840 Query 1001 AGGGAAGAAGAAGAAGTGAATTTGGATGATATTCGTGCAGTTTTTGATGGAATTGAGGGC 1060 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 841 AGGGAAGAGGAAGAAGTGAATTTGGATGATGTTCGTGCAGTTTTTGATGGAATTGAGGGC 900 Query 1061 AGTTATGTAGCGGAGAATGTAGAGAGAAATGATGAAGGGCCCCTGATGATGAATGCCTTT 1120 ||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct 901 AGTTATGTAGCGGAGAATGTAGAGACCAAGGATGAAGGACCCCTGATGATGAATGCCTTT 960 Query 1121 GAGATGATTACCTTATCACAAGGCTTAAATTTATCTGCACTATTTGACAGGCGACAGGAT 1180 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 961 GAGATGATTACCTTATCACAAGGCTTAAATTTATCAGCACTATTTGATAGGCGACAGGAT 1020 Query 1181 TTTGTTAAAAGGCAAACCCGTTTTGTTTCTCGAAGGGAACCTAGTGAGATAATTGCTAAC 1240 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1021 TTTGTTAAAAGGCAAACCCGTTTTGTTTCTCGAAGGGCACCTAGTGAGATAATTGCTAAC 1080 Query 1241 ATTGAGGCTGTAGCGAACTCAATGGGTTTTAAGTCTCATACACGAAACTTCAAGACAAGG 1300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 ATTGAGGCTGTAGCGAACTCAATGGGTTTTAAGTCTCATACACGAAACTTCAAGACAAGG 1140 Query 1301 CTCGAGGGATTATCTTCGATCAAGGCCGGACAGTTAGCTGTTGTGATAGAGATTTACGAG 1360 ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 1141 CTCGAGGGATTATCTTCGATCAAGGACGGGCAGTTAGCTGTTGTGATAGAGATTTACGAG 1200 Query 1361 GTGGCACCATCGCTTTTCATGGTAGACGTAAGAAAGGCTGCTGGTGAAACTCTTGAATAT 1420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GTGGCACCATCGCTTTTCATGGTAGACGTAAGAAAGGCTGCTGGTGAAACTCTTGAATAT 1260 Query 1421 CACAAGTTCTACAAGAAGCTATGTTCGAAACTGGAAAACATAATATGGAGGGCAACAGAA 1480 |||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| Sbjct 1261 CACAAGTTCTACAAGAAGTTATGTTCGAAACTGGAAAACATAATATGGAAAGCAAGAGAA 1320 Query 1481 GGAATACCAAAGTCAGAGATTCTCAGAACAATCACGTTTTGATCCCAACTTAAATCCAAT 1540 ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 1321 GGAATGCCAAAGTCAGAGCTTCTCAGAACAATCACGTTTTGATCCCAACTTAAGTCCAAT 1380 Query 1541 AA 1542 || Sbjct 1381 AA 1382 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65934214095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5