BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35410.1
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947182 jgi|Araly1|947182|scaffold_703411.1 2259 0.0
> Ahg947182 jgi|Araly1|947182|scaffold_703411.1
Length=1382
Score = 2259 bits (1223), Expect = 0.0
Identities = 1329/1382 (96%), Gaps = 0/1382 (0%)
Strand=Plus/Plus
Query 161 TCTGATAAAAGTTTGTAAAGAATGACAAAGAAAATGAGAAGAGTGGGCAAGTACGAGGTT 220
|||| ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1 TCTGGTAAAAATTTGTAAAGAATGACAAAGAAAATGAGGAGAGTGGGGAAGTACGAGGTT 60
Query 221 GGTCGCACAATAGGTGAAGGAACCTTTGCTAAGGTTAAGTTTGCGAGGAACACAGACACT 280
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTCGCACGGTAGGTGAAGGAACCTTTGCTAAGGTTAAGTTTGCGAGGAACACAGACACT 120
Query 281 GGTGATAATGTAGCCATCAAAATTATGGCTAAGAGTACAATACTTAAGAACAGAATGGTT 340
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGAAAATGTTGCCATCAAAATTATGGCTAAGAGTACAATACTTAAGAACAGAATGGTT 180
Query 341 GATCAGATAAAAAGAGAGATATCTATAATGAAGATTGTTCGTCACCCGAACATAGTGAGG 400
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 181 GATCAGATAAAAAGAGAGATATCTATAATGAAGATTGTCCGTCACCCTAACATAGTGAGG 240
Query 401 TTGTATGAGGTGTTGGCGAGTCCTTCGAAAATATATATAGTTTTGGAGTTTGTGACAGGA 460
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TTGTATGAGGTCTTGGCAAGTCCTTCAAAAATATATATAGTTTTGGAGTTTGTGACAGGA 300
Query 461 GGAGAGCTCTTTGATAGAATTGTTCATAAAGGGAGGCTTGAAGAAAGTGAGTCTCGGAAA 520
|||||||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||
Sbjct 301 GGAGAGCTCTTTGATAGAATTGTTCACAATGGGAGACTTGAAGAAAGTGATTCTCGCAAA 360
Query 521 TACTTTCAACAGCTTGTAGATGCTGTTGCTCATTGTCACTGCAAGGGTGTTTACCACCGT 580
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 361 TACTTTCAACAGCTTGTAGATGCTATTGCTCATTGTCATTGCAAGGGTGTTTACCACCGT 420
Query 581 GACCTAAAGCCAGAAAATCTTTTACTCGATACAAATGGAAATCTGAAGGTTTCGGATTTC 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACCTAAAGCCAGAAAATCTTTTACTCGATACAAATGGAAATCTGAAGGTTTCGGATTTC 480
Query 641 GGACTCAGTGCATTGCCTCAGGAAGGAGTAGAACTTCTGCGTACCACATGTGGAACTCCG 700
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGACTCAGTGCATTGCCTCAGCAAGGAGTAGAACTTCTGCGCACCACATGTGGAACTCCG 540
Query 701 AACTATGTAGCTCCAGAGGTACTTAGTGGACAGGGTTACGATGGTTCAGCAGCTGATATT 760
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 541 AACTATGTAGCTCCTGAGGTACTTAGTGGCCAGGGTTACGATGGTTCAGCAGCAGATATT 600
Query 761 TGGTCTTGCGGGGTTATTCTTTTCGTTATATTGGCTGGATATTTACCTTTTTCCGAGACG 820
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 601 TGGTCTTGCGGGGTTATTCTTTTCGTTATATTGGCTGGATATTTACCCTTTTCTGAGACG 660
Query 821 GATCTTCCAGGGTTGTACAGAAAAATAAATGCAGCAGAGTTTTCTTGTCCACCGTGGTTT 880
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 661 GATCTTCCAGGGTTGTACAGAAAAATAAATGCAGCAGAATTTTCTTGTCCACCATGGTTT 720
Query 881 TCCGCAGAAGTGAAGTTTTTAATACATAGGATACTTGACCCCAATCCCAAAACACGTATT 940
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTGCAGAAGTGAAGTTTTTAATTCATAGGATACTTGACCCCAATCCCAAAACACGTATT 780
Query 941 CAAATTCAAGGAATCAAGAAAGATCCTTGGTTCAGATTAAATTATGTGCCTATACGAGCA 1000
|||||||||||||||| ||||||||||||||||||| |||||||||||||||| || |||
Sbjct 781 CAAATTCAAGGAATCAGGAAAGATCCTTGGTTCAGAATAAATTATGTGCCTATCCGGGCA 840
Query 1001 AGGGAAGAAGAAGAAGTGAATTTGGATGATATTCGTGCAGTTTTTGATGGAATTGAGGGC 1060
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 AGGGAAGAGGAAGAAGTGAATTTGGATGATGTTCGTGCAGTTTTTGATGGAATTGAGGGC 900
Query 1061 AGTTATGTAGCGGAGAATGTAGAGAGAAATGATGAAGGGCCCCTGATGATGAATGCCTTT 1120
||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 901 AGTTATGTAGCGGAGAATGTAGAGACCAAGGATGAAGGACCCCTGATGATGAATGCCTTT 960
Query 1121 GAGATGATTACCTTATCACAAGGCTTAAATTTATCTGCACTATTTGACAGGCGACAGGAT 1180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 961 GAGATGATTACCTTATCACAAGGCTTAAATTTATCAGCACTATTTGATAGGCGACAGGAT 1020
Query 1181 TTTGTTAAAAGGCAAACCCGTTTTGTTTCTCGAAGGGAACCTAGTGAGATAATTGCTAAC 1240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1021 TTTGTTAAAAGGCAAACCCGTTTTGTTTCTCGAAGGGCACCTAGTGAGATAATTGCTAAC 1080
Query 1241 ATTGAGGCTGTAGCGAACTCAATGGGTTTTAAGTCTCATACACGAAACTTCAAGACAAGG 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATTGAGGCTGTAGCGAACTCAATGGGTTTTAAGTCTCATACACGAAACTTCAAGACAAGG 1140
Query 1301 CTCGAGGGATTATCTTCGATCAAGGCCGGACAGTTAGCTGTTGTGATAGAGATTTACGAG 1360
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1141 CTCGAGGGATTATCTTCGATCAAGGACGGGCAGTTAGCTGTTGTGATAGAGATTTACGAG 1200
Query 1361 GTGGCACCATCGCTTTTCATGGTAGACGTAAGAAAGGCTGCTGGTGAAACTCTTGAATAT 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTGGCACCATCGCTTTTCATGGTAGACGTAAGAAAGGCTGCTGGTGAAACTCTTGAATAT 1260
Query 1421 CACAAGTTCTACAAGAAGCTATGTTCGAAACTGGAAAACATAATATGGAGGGCAACAGAA 1480
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 1261 CACAAGTTCTACAAGAAGTTATGTTCGAAACTGGAAAACATAATATGGAAAGCAAGAGAA 1320
Query 1481 GGAATACCAAAGTCAGAGATTCTCAGAACAATCACGTTTTGATCCCAACTTAAATCCAAT 1540
||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 GGAATGCCAAAGTCAGAGCTTCTCAGAACAATCACGTTTTGATCCCAACTTAAGTCCAAT 1380
Query 1541 AA 1542
||
Sbjct 1381 AA 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5