BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35430.1
Length=2795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493610 jgi|Araly1|493610|fgenesh2_kg.7__3043__AT5G35430.1 3832 0.0
> Ahg493610 jgi|Araly1|493610|fgenesh2_kg.7__3043__AT5G35430.1
Length=2745
Score = 3832 bits (2075), Expect = 0.0
Identities = 2566/2795 (92%), Gaps = 65/2795 (2%)
Strand=Plus/Plus
Query 1 GCGCGTGGATATTCTCTGAAAAGCGTAtcttcttctctctcgcctctctctGAAATTAAC 60
||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct 1 GCGCGTGGATATTCTCTGAAAAGTGTATC-TC--CTCTCTCGCCTCTCTCTAAAATTCAC 57
Query 61 TTCGCTAGGGTTTT-GATTTTGTGTGTATTTCAATTCTTGCAAAAACATTCCAATTCAGC 119
|| ||||||||||| || ||| |||| | | | || || ||||||| |
Sbjct 58 TTTGCTAGGGTTTTCGA-TTT-TGTG----T--A-T-TT-------CA---CAATTCA-C 96
Query 120 AAAACCCCAAAATCTGGGTAAACAACAATTCGGTTATGGATTCTCGAGATTCGTTATCAT 179
||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 97 AAAACCCAAAAATCTGGGT-TA-AACAATTTGGTTATGGATTCTCGAGATTCGTTATCAT 154
Query 180 CCGACGCCGTTAGAGATGCGTCGTCACTCTCCGACGACGCAGCTGTTCTCTCTGTAACCT 239
||||||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 155 CCGACGCCGCTAGAGATTCGTCGTCACTCTCCGAAGACGCAGCCGTTCTCTCTGTAACCT 214
Query 240 CTACACTCGCTAAAACCGCTCTTTCCTATTTCCAATCTGGAAAATTCGAAGAGTGTATCG 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 215 CTGCACTCGCTAAAACCGCTCTTTCCTATTTCCAATCTGGAAAATTCGAAGAGTGTTTCG 274
Query 300 ACGTTTTGATTCAGCTTGATCAGATGAAACATAACGATCCCAAGGTTCTACACAATATGG 359
|| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 275 ACATTCTGATTCAGCTTGATCAAAAGAAACATAACGATCCCAAGGTTCTACACAATATGG 334
Query 360 CAATTGCAGAGTACTTCAAGGATGGTTGCTCGAATTCCGAGAAATTGGTGGAAGTGCTAA 419
||||||| ||||| |||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 335 CAATTGCTGAGTATTTCAAGGATGGTTGCTCGAATTCCGAGAAACTGGTGCAAGGGCTTA 394
Query 420 AACGTGTCAAGAAACAGAGTGAACAACTTTCTTCTGCAGCAAAAGACCAAGTGGAAGCTG 479
| ||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||
Sbjct 395 ACCGTGTCAAGAAACAGAGTGAAGAACTTGCTTCTGCAGCAAGAGACCAATTGGAAGCTG 454
Query 480 CAAACCCTGGAACTAACGTC-TCTGTGTCAAAGGATCATTTTGATAGGACAGTAACAACT 538
|||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 455 CAAACCCTGGAACTAACG-CATCTGTGTCAAAGGATCATTTTGATAGTACAGTAACAACT 513
Query 539 CTCAACATTGCGGTTACCTGGTTTCATCTGTATCACTATTCAAAATCCTTTTCCATTCTA 598
||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 514 CTCAACATTGCAGTTACCTGGTTTCATCTGCATGACTATTCAAAATCTTTTTCCATTCTA 573
Query 599 GAACCTTTGTTTCAAAATATTCAGCGGCTAGACGAGACAATCGCACTTCAAATCTGCTTC 658
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GAACCCTTGTTTCTAAATATTCAGCGGCTAGACGAGACAATCGCACTTCAAATCTGCTTC 633
Query 659 TTGTTGCTGGATATTTCACTGGCTTGTCGTGATGCTGTAAATTTTTTGGCTGTGTTTGAC 718
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 634 TTGTTGCTGGATATTGCACTGGCTTGTCGTGATGCTGTAAAATTTTTGGCTGTGTTTGAC 693
Query 719 TATATGGACAAAGCTTTTGGTGTTGGTTTTGGAAGTCATGAAGAAAATGGAAGCACAATG 778
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 694 TATATGGAGAAAGCTTTTGGTGTTGGTTTTGGAAGTCACGAAGAAAATGGAAGCACAATG 753
Query 779 CAACTTTCTTCAAATCAGGTATCCAGGACATCTTCTCTCCTGAGCAGCTCGGTGGCGTCA 838
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 754 CAACTTTCTTCAAATCAGGTTTCCAAGACATCTTCTCTCCTGAGCAGCTCGGTGGCGTCA 813
Query 839 GATACTTTG-AGATCTGATTTAACAGCCGCTGAAAGTAGTCTGTGCGAGGAAACTCTAGA 897
||||||||| || || || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 814 GATACTTTGAAG-TCCGAGTTAACAGCTGCTGAAAGTAGTCTGTGTGAGGAAACTCTAGA 872
Query 898 CTATGAAAATGTTCTAGCAGAAATTGAGGCAGAGAAACGAATGAAGCTAGTTGGCCATAT 957
|||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 873 CTATGACAATGTGCTAGCAGAATTTGAGGCAGAGAAACGAATGAAGCCAGTTGGCCATAT 932
Query 958 TCCGGCAAACAACCTTCTCAAGACATTAAGCGAGAGGTCGTTCTCGACTGCTGATCTGAA 1017
|||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 933 TCCGGCAAACAATCTTCTCAAGACATTAAGCGAAAGGACGTTCTCGAATGCTGATCTGAA 992
Query 1018 GCTTGAGTTGCAGCTTTACAAGGTCCGGTTTTTGCTTCTGACCAGAAACTTGAAGCTGGC 1077
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 993 GCTTGAGTTGCAGCTTTACAAGGTCAGGTTTTTGCTTCTTACCAGAAACTTGAAAATGGC 1052
Query 1078 GAAGCGCGAAGTCAAGCATGCGATGAACATAGCTCAAAAAAGGGACTCTTCTATGGCTCT 1137
|||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1053 GAAGCGTGAAGTCAAACATGCAATGAACATTGCTCAAAAAAGGGACTCTTCTATGGCTCT 1112
Query 1138 CCTCTTGAAATCCCAGCTTGAGTATGCTCATGGGAATCATCCAAAGGCTATGAAGCTTTT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1113 CCTCTTGAAATCCCAGCTTGAGTATGCTCATGGGAATCATCCAAAGGCTATAAAGCTTTT 1172
Query 1198 G-TTGGTCTCTGGTATTCATAAAGAAGCAGGGACTTCAGGGATCTTTAACAACAACCTTG 1256
| ||| |||| ||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1173 GGTTG-TCTCCGGTATTCATAAAGAAGCAGGGACTTCAGGAATCTTCAAAAACAACCTTG 1231
Query 1257 GTTGCATATTCTATCAGCTTGGATGTTATCAGGCTTCCTCTGTGCTATTCTTAAAGGCCC 1316
||||||||| ||||||||||||| |||||| |||||||||||| |||||||||| || |
Sbjct 1232 GTTGCATATACTATCAGCTTGGAAATTATCAAGCTTCCTCTGTGTTATTCTTAAAAGCTC 1291
Query 1317 TAAGGAGCTGTTCATCACTTAGAA-ATG-G-GAAACCAGCGAAGACATTTTCTCTCTCAC 1373
|||||||||||||||||||||||| | | |||||||| |||| | |||||||||||||
Sbjct 1292 TAAGGAGCTGTTCATCACTTAGAAGAAACGAGAAACCAGTGAAGCCGTTTTCTCTCTCAC 1351
Query 1374 AGAATAAGTCTATGTTAATCACATACAACTGTGGTTTGCTTTATTTGGCATCTGGA-AAG 1432
|| |||||||| |||| |||| ||||||||| || ||| |||||||||| | ||| |||
Sbjct 1352 AGGATAAGTCTTTGTTGATCATATACAACTGCGGGTTGGTTTATTTGGCTT-TGGGCAAG 1410
Query 1433 CCTCTACTTGCTGCTCAATGTTTCCAGAAGGCAAGCC-ATGTTTTCCGCCGACAACCCCT 1491
|||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct 1411 CCTCTACTTGCTGCTCAATGTTTCCAGAAGGCAAGCGTA-GTTTTCTGGAGACAACCCCT 1469
Query 1492 CATTTGGCTCCGTTTAGCTGAATGCTGTATGATGGCCTTACAAAAGGGTCTTTTGGAAGG 1551
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1470 CATTTGGCTCCGTTTAGCTGAATGCTGTATGATGGCTTTACGAAAGGGTCTTTTGGAAGA 1529
Query 1552 GGGAAACAGTTCTTTGGATAGATCGGAAATCAGAGTCCA-TGTAATTGGGAAAGGGAATC 1610
| ||| || ||||||||||||||| |||||||||||| | |||| ||||||||||||||
Sbjct 1530 GCGAACCACTTCTTTGGATAGATCAGAAATCAGAGTC-AGTGTAGTTGGGAAAGGGAATT 1588
Query 1611 GGAGACAACTAATGATTGAAGAAAATGGATACGTTGAACTTGCTGG-AAGTAAC-CAATT 1668
|||||||||| |||||||||||||||||||| |||||||||||||| || || | |||||
Sbjct 1589 GGAGACAACTTATGATTGAAGAAAATGGATATGTTGAACTTGCTGGCAA-TA-CTCAATT 1646
Query 1669 GTCAAAGCTTTCATTACCACTAGCACGGGTCTGTCTCTCAAATGGTATATATCTGCTCAA 1728
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1647 GTCAAAGCTTTCATTACCACTAGCTCGGGTCTGTCTCTCAAATGGTATATATCTGCTCAA 1706
Query 1729 TGAGTCTCTCTCGAATGATTCTAAATCAGATCTTGGATCAATATTATCCGTGGGGATGAA 1788
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 1707 TGAGTCTCTCTCGAATGATTCTAAATCAGATCTTGGATCAACATTCTCTGTGGGGATGAA 1766
Query 1789 TGAGACCAAAGAAGGATCATCCTCTGATCATGAGGAAGGTAACACGAACACAGACTCGAA 1848
|||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||
Sbjct 1767 TGAGACCAAAGAAGCATCATCCTCTGATCATGAGGAAGCTAACACGAACTCAGACTTGAA 1826
Query 1849 AGAGGCAAAAGGAGGAATGAGCCAAGAAATAATTCAAAACTCACTCTCTGCTTTTGAGGA 1908
|||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||
Sbjct 1827 AGAGGCAAAAGGAGGAATGAGCCAGGACATAATTCAAAACTCACTCTCGGCTTTCAAGGA 1886
Query 1909 TAT-TCGTAATAGAGAAAAGCAGTTGATG-AGACAGGCTCTCTTTGCCAATATGGCTTAT 1966
||| | ||| || |||||||||||||||| | ||||||||| |||||||||||||| |||
Sbjct 1887 TATGT-GTAGTAAAGAAAAGCAGTTGATGCA-ACAGGCTCTTTTTGCCAATATGGCATAT 1944
Query 1967 GTAGAATTGGAGTTGGCGAATCCTATCAAAGCCTTGTCAGCTGCTACTTCACTCTTGCAA 2026
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1945 GTAGAATTGGAGTTGGAGAATCCTGTCAAAGCCTTGTCAGCTGCTACTTCACTCTTGCAA 2004
Query 2027 CTTGCAGATTGTTCGAAGATTTATGTTTTCCTAGGCCATATCTATGCAGCGGAGGCCCTC 2086
||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2005 CTTCCAGATTGTTCAAAGATTTATGTTTTCCTAGGCCATATCTATGCAGCTGAGGCCCTC 2064
Query 2087 TGCTTGCTCAATCGACCCATTGAAGCTGGTGCACATTTATCCGCCTATCTACTCGGACAG 2146
||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||
Sbjct 2065 TGCTTGCTCAATCGACCGATTGAAGCTGGTGCACATTTATCTGCCTATTTAGTCGGACAG 2124
Query 2147 GATGATTTTAAACTGCCATATGCGCAAGAAGACTTTGACCAGTGGTGGAAGCACACAAGT 2206
|||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2125 GATGATTTCAGACTGCCATACGCGCAAGAAGACTTTGACCAGTGGTGGAAGCACACAAGC 2184
Query 2207 TCTGATTGTGAAGAGACATTGGATCCCTCCACGGGAAATACCCGGGATTCAGTTTTCCTT 2266
|||||||||||||||||||||||||| ||||| |||||| ||||||| || |||||||||
Sbjct 2185 TCTGATTGTGAAGAGACATTGGATCCGTCCACAGGAAATGCCCGGGAATCTGTTTTCCTT 2244
Query 2267 AAGCCAGAAGAAGCTCGTGGAGCACTTTTCGCAGACCTTGCCGCGCTGCTTGCCACACAA 2326
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2245 AAGCCAGAAGAAGCTCGTGGAGCACTTTTCGCAGACCTTGCTGCGCTGCTTGCCACACAA 2304
Query 2327 GGACATCACGACCAAGCAAAATCTTTGATAACGCACGCGTTAACTCTCTTACCGAACAAT 2386
|||||||||||||| |||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct 2305 GGACATCACGACCAGGCAAAACCTTTGATTACACACGCATTAACTCTCTTACCGAACAAT 2364
Query 2387 GTACAAGCTACAGTTACAGCAGTCTACATTGATCTCATGTTGGGTAGGTCACAAGACGCC 2446
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 2365 GTACAAGCTACAGTTACAGCAGTCTACATCGATCTCATGTTGGGTAGGTCGCAAGATGCC 2424
Query 2447 CTTGCTCGGTTAAAACAGTGTACCCATGTGAGCTTTGTTCCAGGGAGATTGGAAGTGAGA 2506
||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 2425 CTTGCTCGGTTAAAACAGTGTACCCGTGTGAGCTTTGTTCCAGGCAGACTGGAAGTGAGA 2484
Query 2507 GCCTCATAGAAGATTTGTACTCTAAATTGGTATGGTTTGTTCTTTTTTGAAATTCAAGCT 2566
||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||
Sbjct 2485 GCCTCATAGAAGATTTGTACTCTAA-TCGGTATGGTTTGTTTTTTTTTTAAATTCAAGCT 2543
Query 2567 TTAGAAATTAGTTGGTTCGATAAATATCAGAGAATAAACTTTTGTACAAGtttttttttg 2626
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 2544 TTAGAAATTAGTTGGTTCTATAAATATCAGAGAATAAGCTTTTGTACAAGTTTTTTTTTT 2603
Query 2627 tttttAATTTCTTGTATTAGTACTGTGAGATGATATTTGCACTCGTGACTTAGATTTGGG 2686
||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2604 TTTTTAATTTCTTTTATTAGTACTGTGAGATGATATTTGCATTCTTGACTTAGATTT--- 2660
Query 2687 TCTTGAGGGATTAGTCGATTTCTTGTTCAGGAACAACATAAGATTGTTAGAACAAA-CAC 2745
| | || | ||||||||||||||||||||| ||||||||| ||||||||| ||
Sbjct 2661 T-T--AG---T----CGATTTCTTGTTCAGGAACAAGATAAGATTGGTAGAACAAAACAA 2710
Query 2746 CAGTTTTTGTACttttttttAAATCTTGTTTAAGA 2780
|||||||||||||| ||||||||||||||| |||
Sbjct 2711 AAGTTTTTGTACTTTGTTTTAAATCTTGTTTCAGA 2745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105471888405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5