BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35520.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330190 jgi|Araly1|330190|fgenesh1_pm.C_scaffold_7002417 987 0.0
> Ahg330190 jgi|Araly1|330190|fgenesh1_pm.C_scaffold_7002417
Length=717
Score = 987 bits (534), Expect = 0.0
Identities = 659/720 (92%), Gaps = 6/720 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGAAGCAAAAGCGAGGCAGTGTTCGATTCCATGAATCTAAATCCTCAGATTTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGAAGCAAAAGCGAGGCAGTGTTCGATTCCATGAATCTAAATCCTCAGATTTTC 60
Query 61 ATCAACGAAGCAATCAACTCCGTCGAAGATTATGTCGAC-CAAGCTTTTGACTTCTATGC 119
|| |||||| ||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct 61 ATTAACGAAACAATCAACTCCGTCGAAGATTATGTTGACGCA-GCTTTTGATTTCTATGG 119
Query 120 CCGTGATGCATCCAAATCTCTCAAAATCAAAGGATCTGATAAACAAAAGTCACAAGCTTT 179
||| || |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 120 CCGAGAAGCATCCAAATTTCTCAAAATCAACGGATCTGTTAAACAAAAGTCACAAGATTT 179
Query 180 ATCAAATGGTATTGCTCGTGTTCGTGGTTTGCTACTATCTGTAATCGACAATCGTTTGAA 239
|||||||||||||| ||||||||||||||| ||| ||| || || ||||| |||||| |
Sbjct 180 ATCAAATGGTATTGAACGTGTTCGTGGTTTGATACAATCGGTTATTGACAAGCGTTTGGA 239
Query 240 ATTGTGGGAAAGCTATTCTCTTCGATTCTGTTTCGCAGTTCCTGATGGATTTGTGTTACC 299
||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 ATTGTGGGAGAGCTATTGTGTTCGATTCTGTTTCGCAGTTCCTGATGGATTTGTGTTGCC 299
Query 300 AAAGAGTGAG-GAGTCTTCGTCTGTGCATCAGGATGGGTTATATGATCTAGAATTAGATG 358
|||||||| | ||| | ||| | | |||||||| ||||||| ||||||||| || ||||
Sbjct 300 AAAGAGTG-GCGAGCCGTCGCCCATTCATCAGGAAGGGTTATGTGATCTAGAGTTGGATG 358
Query 359 CAGAATTGGATTCTTTAAGGGATAAGCTTAATGTGGTGGGAAAGAGGTCTGTTGAGCTTG 418
|||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 359 CAGAATTGGATTCTTTGAGGGATAAGCTTAATTTGGTAGGAAAGAGGTCTGTTGAGCTGG 418
Query 419 ACTCTGAGCTCCAGGCTTTAGAAAGAAGC-TCGGTTTCGAGGGAACGGTCTTTGAGACTC 477
|||| ||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||
Sbjct 419 ACTCCGAGCTTCAGGCTTTAGAAAGA-GCCTCGGTTTCGAGGGAACGGTCTGTGAGACTC 477
Query 478 GTTAATGAAGCTTTGGAGCTTTATGATGAGTCTTCTATGGATGAAATATTCAAAGAGATG 537
|||||||| |||||||||| |||||||||||| ||| | |||||||| ||||||||||||
Sbjct 478 GTTAATGAGGCTTTGGAGCGTTATGATGAGTCGTCTGTCGATGAAATGTTCAAAGAGATG 537
Query 538 ACGAAAATGGCATCGGAACTTCGTGCAAGCGTGGAGAGGCTGAAAACAAGAAGAATGAAA 597
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 538 GCAAAAATGGCATCGGAACTTCGTGCAAGCGTGGATAGGCTGAAAACAAGAAGAATGGAA 597
Query 598 GCAAGTGAAAGCGCTAAAGTAAAGAGGCTAAAGAACCATGGCAAAGAGTTTTCAGCAATG 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 GCCAGTGAAAGCGCTAAAGTAAAGAGGCTAAAGAACCATGGCAAAGAGTTTTCGGCAATG 657
Query 658 ACTTTTGATGGAAAGCTTGAAGACCTCGAAAAGTTTCAAGCCGAGTTAAGGAAGATGTGA 717
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 ACTTTTGATGGAAAGGTTGAAGACCTCGAAAAGTTTCAAGCCGAGTTAAAGAAGATGTGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5