BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35530.1
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1 1552 0.0
Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1 819 0.0
Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1 760 0.0
> Ahg493615 jgi|Araly1|493615|fgenesh2_kg.7__3048__AT5G35530.1
Length=960
Score = 1552 bits (840), Expect = 0.0
Identities = 923/962 (96%), Gaps = 9/962 (1%)
Strand=Plus/Plus
Query 4 TAACCACACAATTTTATCATTTCACTCC-TAACGCACTCTCTTCTCCGAATCTAGGGTTT 62
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1 TAACCACACAATTTTATCATTTCACTCCTTAACGCACTCTCTTCACCGAATCTAGGGTTT 60
Query 63 TTGTCTCTAGCCTCCTCAAGCTTTGC-A-AACAATCATGGCGACCCAGATCAGCAAGAAG 120
|||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 61 TTGTCTCTAGCCTCCTCAAGCTTTGCAACAACAAAAATGGCGACCCAGATCAGCAAGAAG 120
Query 121 AGAAAGTTCGTAGCCGATGGTGTGTTTTACGCTGAACTCAATGAGGT-TCTAACCAGAGA 179
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 121 AGAAAGTTCGTAGCCGATGGTGTGTTTTACGCTGAGCTCAATGAGGTGT-TAACCAGAGA 179
Query 180 GCTTGCTGAGGATGGTTACTCTGGTGTTGAGGTTCGCGTCACTCCTATGCGTACTGAGAT 239
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 180 GCTTGCTGAGGATGGTTACTCTGGCGTTGAGGTTCGTGTCACTCCTATGCGTACTGAGAT 239
Query 240 CATCATTAGAGCCACTCGTACTCAAAACGTTCTCGGTGAGAAGGGAAGGAGGATTAGGGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATCATTAGAGCCACTCGTACTCAAAACGTTCTCGGTGAGAAGGGAAGGAGGATTAGGGA 299
Query 300 ATTGACATCTCTTGTACAAAAGAGATTCAAATTTCCTCAGGACAGTGTTGAGCTTTATGC 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 ATTGACATCTCTTGTACAAAAGAGATTCAGATTTCCTCAGGACAGTGTTGAGCTTTATGC 359
Query 360 TGAGAAGGTTGCTAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAGAAGGTTGCTAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAA 419
Query 420 GCTTCTTGGTGGTCTTGCTGTTCGTAGGGCGTGCTATGGTGTTTTAAGGTTTGTTATGGA 479
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 420 GCTTCTTGGTGGTCTTGCTGTTCGTAGGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGA 479
Query 480 GAGTGGAGCTAAAGGATGCGAAGTCATTGTGAGTGGAAAACTCCGTGCTGCACGTGCTAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGTGGAGCTAAAGGATGCGAAGTCATTGTGAGTGGAAAACTCCGTGCTGCACGTGCTAA 539
Query 540 GTCGATGAAGTTCAAGGATGGTTACATGGTTTCCTCAGGTCAGCCAACCAAGGAATACAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GTCGATGAAGTTCAAGGATGGTTACATGGTTTCCTCAGGTCAGCCAACCAAAGAATACAT 599
Query 600 TGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGGGTGTGCTTGGTCTCAAGGTGAAGAT 659
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 600 TGATGCTGCAGTTAGGCACGTTCTTCTTAGACAGGGTGTGCTAGGACTCAAGGTGAAGAT 659
Query 660 CATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGT 719
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 CATGCTTGACTGGGACCCCAAGGGCAAACTAGGACCGATGACACCATTGCCTGATGTTGT 719
Query 720 GATCATCCATACACCGAAAGAAGATGATGTATACATTGCACCTGCTCAGGTTGTTACTCA 779
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 720 GATCATCCATACACCGAAAGAAGATGATGTTTACATCGCACCTGCTCAGGTTGTTGCTCC 779
Query 780 -AGCTGCTTTTGTACCGGAAGCTCCATTAACCACCACAGATTATCCAGCAATGCCAGTTG 838
| ||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 780 TA-CTGCTCTTGTACCGGAAGCCCCATTAACAACCACAGATTATCCCGCAATGCCAGTTG 838
Query 839 CTTAGAGAGCCTTTTCGTTTTCTGGTTTAAAACCCAATGGGGATGGTTCtttttttGGGA 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 CTTAGAGAGCCTTTTCGTTTTCTGGTTTAAAACCCAATGAGGATGGTTCTTTTTTTGGGA 898
Query 899 CAGTACTAGTTTTCTCATGTTATTCTAAGTTAATACTTA--AAGTTCTGGAGGTTGAATT 956
|||||||||||||||||||||||| || | |||||||| ||||||| | |||||||||
Sbjct 899 CAGTACTAGTTTTCTCATGTTATTTTATGATAATACTTTTTAAGTTCTTGTGGTTGAATT 958
Query 957 AC 958
||
Sbjct 959 AC 960
> Ahg482088 jgi|Araly1|482088|fgenesh2_kg.4__1148__AT2G31610.1
Length=1045
Score = 819 bits (443), Expect = 0.0
Identities = 641/737 (87%), Gaps = 12/737 (2%)
Strand=Plus/Plus
Query 91 ACAATCATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTAC 150
|||| ||||||||| || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct 81 ACAAACATGGCGACTCAAATCAGCAAGAAGAGAAAGTTTGTAGCAGATGGTGTATTCTAC 140
Query 151 GCTGAACTCAATGAGGTTCTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGTGTTGAG 210
|||||| | ||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 141 GCTGAATTGAATGAAGTTCTCACCAGAGAGCTTGCAGAGGATGGTTACTCTGGTGTTGAA 200
Query 211 GTTCGCGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTT 270
||| | || ||||| ||| | |||||||| ||||| ||||| || |||||||| || |||
Sbjct 201 GTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTT 260
Query 271 CTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTCAAA 330
|||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 261 CTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACATCTCTTGTCCAGAAGAGATTCAAG 320
Query 331 TTTCCTCAGGACAGTGTTGAGCTTTATGCTGAGAAGGTT-GCTAACAGAGGTCTTTGTGC 389
|||||| ||||||||||||||||||||||| |||||| | ||||||||||| |||||
Sbjct 321 TTTCCTGTTGACAGTGTTGAGCTTTATGCTGAAAAGGTTAAC-AACAGAGGTCTCTGTGC 379
Query 390 TATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGGGC 449
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 380 CATTGCTCAGGCTGAGTCTCTACGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGCAGGGC 439
Query 450 GTGCTATGGTGTTTTAAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCATTGT 509
|| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 440 CTGTTATGGTGTTTTGAGATTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATCGT 499
Query 510 GAGTGGAAAACTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCAAGGATGGTTACATGGT 569
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 500 GAGTGGAAAGCTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCATGGATGGTTACATGGT 559
Query 570 TTCCTCAGGTCAGCCAACCAAGGAATACATTGA-TGCTGCAGTTAGGCATGTTCTT-CTT 627
||| || ||||| ||||| |||||||||||||| | ||||||| || |||||| || |||
Sbjct 560 TTCATCTGGTCAACCAACTAAGGAATACATTGACT-CTGCAGTGAGACATGTT-TTGCTT 617
Query 628 AGACAGGGTGTGCTTGGTC-TCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAA 686
|||||||| ||| |||| |||||||||||||||||||||| |||||||| | ||||||
Sbjct 618 AGACAGGGGGTG-TTGGGAATCAAGGTGAAGATCATGCTTGATTGGGACCCTACGGGCAA 676
Query 687 A-CAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAAGATG 745
| || ||||| | ||||||||||||||||||||||||||| ||| | || ||||| ||||
Sbjct 677 ATCA-GGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATGCTCCTAAAGATGATG 735
Query 746 ATGT-ATACATTGCACCTGCTCAGGTTGTTACTCAAGCTGCTTTTGTACCGGAAGCTCCA 804
||| | |||| || ||||||||||||| | ||| || | || |||| || || ||||||
Sbjct 736 TTGTCA-ACATCGCGCCTGCTCAGGTTGCTGCTCCAGTTACTCTTGTGCCAGAGGCTCCA 794
Query 805 TTAACCACCACAGATTA 821
| || ||| ||||||
Sbjct 795 CTCACAACCGTAGATTA 811
> Ahg485780 jgi|Araly1|485780|fgenesh2_kg.5__1772__AT3G53870.1
Length=973
Score = 760 bits (411), Expect = 0.0
Identities = 641/751 (85%), Gaps = 20/751 (3%)
Strand=Plus/Plus
Query 91 ACAATCATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTAC 150
|||| |||| |||| ||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 54 ACAAACATGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCAGACGGTGTGTTCTAC 113
Query 151 GCTGAACTCAATGAGGTTCTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGTGTTGAG 210
|||||| | ||||||||||| || |||||||| || ||||||||||||||||||||||||
Sbjct 114 GCTGAATTGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAG 173
Query 211 GTTCGCGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTT 270
||| | || ||||| ||| | |||||||| ||||| ||||| || |||||||| || |||
Sbjct 174 GTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCGACACGTACTCAGAATGTT 233
Query 271 CTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTCAAA 330
|||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 234 CTCGGTGAGAAGGGAAGGAGAATTAGGGAATTGACATCCCTTGTCCAGAAGAGATTCAAG 293
Query 331 TTTCCT-CAGGACAGTGTTGAGCTTTATGCTGAGAAGGT-TGCTAACAGAGGTCTTTGTG 388
|||||| | |||||||||||||||||||| |||||||| | ||||||||||| ||||
Sbjct 294 TTTCCTGTA-GACAGTGTTGAGCTTTATGCCGAGAAGGTCAAC-AACAGAGGTCTCTGTG 351
Query 389 CTATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGGG 448
| |||||||| ||||| ||||| || ||||||||||| |||||||| |||||||||||||
Sbjct 352 CCATTGCTCAAGCTGAATCTCTACGATACAAGCTTCTCGGTGGTCTCGCTGTTCGTAGGG 411
Query 449 CGTGCTATGGTGTTTTAAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCATTG 508
| ||||||||||| || |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 412 CTTGCTATGGTGTATTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTCATTG 471
Query 509 TGAGTGGAAAACTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCAAGGATGGTTACATGG 568
|||||||||| |||||||| ||| | || ||||| |||||||||||||||||||||||||
Sbjct 472 TGAGTGGAAAGCTCCGTGCAGCAAGAGCCAAGTCTATGAAGTTCAAGGATGGTTACATGG 531
Query 569 TTTCCTCAGGTCAGCCAACCAAGGAATACATTGA-TGCTGCAGTTAGGCATGTTCTT-CT 626
| || || ||||| ||||| |||||||||||||| | ||||||| || |||||| || ||
Sbjct 532 TGTCATCTGGTCAACCAACTAAGGAATACATTGACT-CTGCAGTGAGACATGTT-TTGCT 589
Query 627 TAGACAGGGTGTGCTT-GGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCA 685
||||||||||||| || || ||||||| ||| | |||||||| ||||| || |||||||
Sbjct 590 TAGACAGGGTGTG-TTGGGAATCAAGGTTAAGGTTATGCTTGATTGGGATCCTAAGGGCA 648
Query 686 AA-CAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAAGAT 744
|| | ||||| ||||||||||||||||||||||||||||| ||| | || || |||||
Sbjct 649 AATC-CGGACCAATGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAGGAAGAA 707
Query 745 GATGTA-T-ACATTGCACCTGCTCAGGTTGTTACTCAAGCTGCTTTTGTACCGGAAGCTC 802
|| | | | || |||||||||||||||||| | | | |||||| | || |||||||||
Sbjct 708 GA-G-ACTTACGTTGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCATAGCGGAAGCTC 765
Query 803 CA-TTAACCA-CCACAGATTATCCAGCAATG 831
|| ||| | | || |||||| ||||| |||
Sbjct 766 CACTTA-C-AGCCGTAGATTACCCAGCGATG 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40486537854
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5