BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35540.1 Length=570 Score E Sequences producing significant alignments: (Bits) Value Ahg314892 jgi|Araly1|314892|fgenesh1_pm.C_scaffold_1003672 442 1e-123 Ahg936884 jgi|Araly1|936884|scaffold_501075.1 291 5e-78 > Ahg314892 jgi|Araly1|314892|fgenesh1_pm.C_scaffold_1003672 Length=555 Score = 442 bits (239), Expect = 1e-123 Identities = 388/454 (85%), Gaps = 33/454 (7%) Strand=Plus/Plus Query 1 ATGAAAATGTTCACCACTCCGGATGAAATGTGGGATGAGTACTTAAAGTTTGAGGATCTT 60 ||||||| ||| ||| ||||||||||| ||||||||||||| || || |||||||| Sbjct 1 ATGAAAAGGTTTACCGCTCCGGATGAAGTGTGGGATGAGTA-TTTAA-----AGGATCTT 54 Query 61 CAACTCATATTTGGATGTGGCTTAGCTACTGGTGGTTCCGCAATTGGAATGGGTGAAACC 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 55 CAACTCATATTTGGATGTGGTTTAGCTACTGGTGGTTCCGCAATTGGAATGGGTGAAACC 114 Query 121 ACTGATGCT-----C----GAA-------GAGT----G-G-G--AGATAACAAAATTGAT 156 ||||||||| | ||| |||| | | | |||||||||||||||| Sbjct 115 ACTGATGCTCGAACCTTTAGAAGTGGGGGGAGTAAAAGAGTGAAAGATAACAAAATTGAT 174 Query 157 GATGAAGTTTTTGAACTATTATCACAAGAGCTAGTTGCATCACCACAATGTGATATACCA 216 ||||||||||||||||||| ||| ||||||| || |||||| ||| ||||||||| ||| Sbjct 175 GATGAAGTTTTTGAACTATCATCTCAAGAGCCAGCTGCATCGCCAGAATGTGATACGCCA 234 Query 217 CTCTTTCCATGCACAAATCCAAAAGGACGGGTAGAAAAACTTCATCCAAGGAAGAGGTTT 276 | ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 235 CCCTTTCCAGGCACAAATCCAAAAGGACGGGTAGAAAAACTTCGTCCAAGGAAGAGGTCT 294 Query 277 AGAACCTCATCTACTAGCAATATAGGTAAGCTGAAAAATGACGAAGAGGAGGATCCTATG 336 ||||||| | ||||||||||| || ||| ||||||| ||| || | | ||||||||||| Sbjct 295 AGAACCTTAGCTACTAGCAATGCAGATAAACTGAAAACTGATGA-G-G-AGGATCCTATG 351 Query 337 ATCGTGAATCATATTCGCTACGAAGCAGTTACCTTGATTCATTCACTTGGAATGAAAAAT 396 ||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 352 ATCATAAATCATATTCGCTACAAAGCAGTTACCTTGATTCATTCGCTTGGAATGAAAAAT 411 Query 397 GTCCTCATAGACATGTCAGTAGAAGAACGTTTTG 430 ||| |||| |||||||| |||||||||||||||| Sbjct 412 GTCTTCATCGACATGTCGGTAGAAGAACGTTTTG 445 > Ahg936884 jgi|Araly1|936884|scaffold_501075.1 Length=820 Score = 291 bits (157), Expect = 5e-78 Identities = 268/316 (85%), Gaps = 29/316 (9%) Strand=Plus/Plus Query 49 TTTGAGGATCTTCAACTCATATTTGGATGTGGCTTAGCTACTGGTGGTTCCGCAATTGGA 108 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 408 TTTGAGGATCTTCAACTCATATTTGGATGTGGCTTAGCTACTAGTTGTTCCGCAATTGGA 467 Query 109 ATGGGTGAAACCACTGAT----G---C--TCGAA-------GAGT----G-G-G--AGAT 144 ||||||||||||| |||| | | | ||| |||| | | | |||| Sbjct 468 ATGGGTGAAACCATTGATGCCCGAACCTTTAGAAGTGGGGGGAGTAAAAGAGTGAAAGAT 527 Query 145 AACAAAATTGATGATGAAGTTTTTGAACTATTATCACAAGAGCTAGTTGCATCACCACAA 204 ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| || Sbjct 528 AACAAAATTGATGATGAAGTTTTTGAACTATCATCTCAAGAGCCAGTTGCATCACCAAAA 587 Query 205 TGTGATATACCACTCTTTCCATG-CACAAATCCAAAAGGACGGGTAGAAAAACTTCATCC 263 |||||||| |||| |||| || | |||||||||||||||||||||||||||||||| ||| Sbjct 588 TGTGATATGCCACCCTTTTCA-GACACAAATCCAAAAGGACGGGTAGAAAAACTTCGTCC 646 Query 264 AAGGAAGAGGTTTAGAACCTCATCTACTAGCAATATAGGTAAGCTGAAAAATGACGAAGA 323 ||||||||||| |||||||| | ||||||||||| ||| ||||||||||| ||| || | Sbjct 647 AAGGAAGAGGTCTAGAACCTTAGCTACTAGCAATGTAGATAAGCTGAAAACTGATGA-G- 704 Query 324 GGAGGATCCTATGATC 339 | |||||||||||||| Sbjct 705 G-AGGATCCTATGATC 719 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20832951594 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5