BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35540.1
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314892 jgi|Araly1|314892|fgenesh1_pm.C_scaffold_1003672 442 1e-123
Ahg936884 jgi|Araly1|936884|scaffold_501075.1 291 5e-78
> Ahg314892 jgi|Araly1|314892|fgenesh1_pm.C_scaffold_1003672
Length=555
Score = 442 bits (239), Expect = 1e-123
Identities = 388/454 (85%), Gaps = 33/454 (7%)
Strand=Plus/Plus
Query 1 ATGAAAATGTTCACCACTCCGGATGAAATGTGGGATGAGTACTTAAAGTTTGAGGATCTT 60
||||||| ||| ||| ||||||||||| ||||||||||||| || || ||||||||
Sbjct 1 ATGAAAAGGTTTACCGCTCCGGATGAAGTGTGGGATGAGTA-TTTAA-----AGGATCTT 54
Query 61 CAACTCATATTTGGATGTGGCTTAGCTACTGGTGGTTCCGCAATTGGAATGGGTGAAACC 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 55 CAACTCATATTTGGATGTGGTTTAGCTACTGGTGGTTCCGCAATTGGAATGGGTGAAACC 114
Query 121 ACTGATGCT-----C----GAA-------GAGT----G-G-G--AGATAACAAAATTGAT 156
||||||||| | ||| |||| | | | ||||||||||||||||
Sbjct 115 ACTGATGCTCGAACCTTTAGAAGTGGGGGGAGTAAAAGAGTGAAAGATAACAAAATTGAT 174
Query 157 GATGAAGTTTTTGAACTATTATCACAAGAGCTAGTTGCATCACCACAATGTGATATACCA 216
||||||||||||||||||| ||| ||||||| || |||||| ||| ||||||||| |||
Sbjct 175 GATGAAGTTTTTGAACTATCATCTCAAGAGCCAGCTGCATCGCCAGAATGTGATACGCCA 234
Query 217 CTCTTTCCATGCACAAATCCAAAAGGACGGGTAGAAAAACTTCATCCAAGGAAGAGGTTT 276
| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 235 CCCTTTCCAGGCACAAATCCAAAAGGACGGGTAGAAAAACTTCGTCCAAGGAAGAGGTCT 294
Query 277 AGAACCTCATCTACTAGCAATATAGGTAAGCTGAAAAATGACGAAGAGGAGGATCCTATG 336
||||||| | ||||||||||| || ||| ||||||| ||| || | | |||||||||||
Sbjct 295 AGAACCTTAGCTACTAGCAATGCAGATAAACTGAAAACTGATGA-G-G-AGGATCCTATG 351
Query 337 ATCGTGAATCATATTCGCTACGAAGCAGTTACCTTGATTCATTCACTTGGAATGAAAAAT 396
||| | ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 352 ATCATAAATCATATTCGCTACAAAGCAGTTACCTTGATTCATTCGCTTGGAATGAAAAAT 411
Query 397 GTCCTCATAGACATGTCAGTAGAAGAACGTTTTG 430
||| |||| |||||||| ||||||||||||||||
Sbjct 412 GTCTTCATCGACATGTCGGTAGAAGAACGTTTTG 445
> Ahg936884 jgi|Araly1|936884|scaffold_501075.1
Length=820
Score = 291 bits (157), Expect = 5e-78
Identities = 268/316 (85%), Gaps = 29/316 (9%)
Strand=Plus/Plus
Query 49 TTTGAGGATCTTCAACTCATATTTGGATGTGGCTTAGCTACTGGTGGTTCCGCAATTGGA 108
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 408 TTTGAGGATCTTCAACTCATATTTGGATGTGGCTTAGCTACTAGTTGTTCCGCAATTGGA 467
Query 109 ATGGGTGAAACCACTGAT----G---C--TCGAA-------GAGT----G-G-G--AGAT 144
||||||||||||| |||| | | | ||| |||| | | | ||||
Sbjct 468 ATGGGTGAAACCATTGATGCCCGAACCTTTAGAAGTGGGGGGAGTAAAAGAGTGAAAGAT 527
Query 145 AACAAAATTGATGATGAAGTTTTTGAACTATTATCACAAGAGCTAGTTGCATCACCACAA 204
||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||
Sbjct 528 AACAAAATTGATGATGAAGTTTTTGAACTATCATCTCAAGAGCCAGTTGCATCACCAAAA 587
Query 205 TGTGATATACCACTCTTTCCATG-CACAAATCCAAAAGGACGGGTAGAAAAACTTCATCC 263
|||||||| |||| |||| || | |||||||||||||||||||||||||||||||| |||
Sbjct 588 TGTGATATGCCACCCTTTTCA-GACACAAATCCAAAAGGACGGGTAGAAAAACTTCGTCC 646
Query 264 AAGGAAGAGGTTTAGAACCTCATCTACTAGCAATATAGGTAAGCTGAAAAATGACGAAGA 323
||||||||||| |||||||| | ||||||||||| ||| ||||||||||| ||| || |
Sbjct 647 AAGGAAGAGGTCTAGAACCTTAGCTACTAGCAATGTAGATAAGCTGAAAACTGATGA-G- 704
Query 324 GGAGGATCCTATGATC 339
| ||||||||||||||
Sbjct 705 G-AGGATCCTATGATC 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20832951594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5