BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35550.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493616 jgi|Araly1|493616|fgenesh2_kg.7__3049__AT5G35550.1 1421 0.0
> Ahg493616 jgi|Araly1|493616|fgenesh2_kg.7__3049__AT5G35550.1
Length=952
Score = 1421 bits (769), Expect = 0.0
Identities = 907/969 (94%), Gaps = 28/969 (3%)
Strand=Plus/Plus
Query 1 TTCTCAACACAACACTAAAGACAATTGTACCAACCACACAACCACaagagagagaaaagt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTCTCAACACAACACTAAAGACAATTGTACCAACCACACAACCATAAGAGAGAGAAAA-A 59
Query 61 gagaatgggaaagagagcaactactagtgtgaggagagaagagTTAAACAGAGGAGCTTG 120
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 60 GAGAATGGGAAAGAGAGCAACTACAAGTGTGAAGAGAGAAGAGTTAAACAGAGGAGCTTG 119
Query 121 GACTGATCATGAAGACAAGATCCTTAGAGATTACATCACCACTCACGGCGAAGGCAAATG 180
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 120 GACTGATCATGAAGACAAGATCCTAAGAGATTACATCACGACTCACGGCGAAGGCAAATG 179
Query 181 GAGCACTCTCCCTAACCAAGCTGGTCTCAAGAGGTGTGGCAAAAGCTGTAGACTTCGGTG 240
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGCAATCTCCCGAACCAAGCTGGTCTCAAGAGGTGTGGCAAAAGCTGTAGACTTCGGTG 239
Query 241 GAAGAACTACCTAAGACCGGGGATAAAGCGCGGTAACATCTCATCTGATGAAGAAGAACT 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAGAACTACTTAAGACCGGGGATAAAGCGCGGTAACATCTCATCTGATGAAGAAGAACT 299
Query 301 CATAATCCGTCTCCATAATCTTCTTGGAAACAGATGGTCGTTGATAGCTGGGAGGCTTCC 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 CATAATCCGTCTCCATAATCTTCTTGGGAACAGATGGTCGTTGATAGCTGGGAGGCTTCC 359
Query 361 AGGCCGAACAGACAATGAAATAAAGAATCATTGGAACTCAAACCTCCGCAAAAGACTTCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGCCGAACAGACAATGAAATAAAGAATCATTGGAACTCAAACCTCCGCAAAAGACTTCC 419
Query 421 CAAAACTCAAACCAAGCAACCAAAACGTATAAAACATTCGACGAACAACGAGAATAATGT 480
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 420 CAAAACTCAAACCAAGCAATCAAAACGTATAAAACATTCGACAAACAACGAGAATAATGT 479
Query 481 ATGTGTTATACGTACAAAGGCGATTAGGTGCTCAAAGActcttctcttctcggatctctc 540
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 480 ATGTGTTATACGTACAAAGGCGATTAGGTGCTCAAAGGCTCTTCTCTTCTCGGATCTCGC 539
Query 541 tctTCAGAAGAAGAGTAGTACTAGT-----C---C-ACTACCTCTGAAAGAACAAGAGAT 591
|||||||||| |||||||||||||| | | |||||||||||||||||||||||
Sbjct 540 TCTTCAGAAGCAGAGTAGTACTAGTAGTATCAGTCCACTACCTCTGAAAGAACAAGAGAA 599
Query 592 GGATCAAGGTGGATCTTCGTTGATGGGAGATCTCGAATTCGATTTCGATAGGATCCATTC 651
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 600 GGATCAAGGTGGGTCTTCGTTGATGGGAGATCTCGACTTCGATTTCGATAGGATCCACTC 659
Query 652 GGAGTTTCACTTCCCGGATTTGATGGATTTTGATGGTTTGGACTGTGGAAACGTTACATC 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGAGTTTCACTTCCCGGATTTGATGGATTTTGATGGTTTGGACTGTGGAAACGTTACATC 719
Query 712 TCTTGTTTCATCTAACGAGATTTTGGGAGAGTTGGTTCCTGCTCAAGGTAATCTCGATCT 771
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 TCTTGTTTCATCTAACGAGATTTTGGGAGATTTGGTTCCTGCTCAAGGTAATCTCGATCT 779
Query 772 CAATAGACCTTTCACTTCTTGTCATCATCGTGGCGACGATGAAGATTGGCTCCGAGACTT 831
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 CAATAGACCTTTCACTTCTTGTCATCATCGCGGCGACGATGAAGATTGGCTCCGAGACTT 839
Query 832 CACTTGTTGAGCCTATATTGCAAAAACCTACGTTAATACATATTTCTCTATACGGACAAA 891
|||||||||||||||| | || | || | | | ||| | | | | |||||
Sbjct 840 CACTTGTTGAGCCTAT-TA-CATATTTCT-C-T-A-TACGGA---CA--A-A---ACAAA 884
Query 892 AGTATATC-TGTATTTGTCTGAACGCTTCTAATTACT-AACTTACTAAGGAGACCAAGAA 949
|||||| | |||||||||||| |||||||||||| || |||||||||| |||||||||||
Sbjct 885 AGTATA-CGTGTATTTGTCTGTACGCTTCTAATTTCTTAACTTACTAAAGAGACCAAGAA 943
Query 950 ATACAAATA 958
| |||||||
Sbjct 944 AAACAAATA 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5