BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G35570.1 Length=2424 Score E Sequences producing significant alignments: (Bits) Value Ahg493618 jgi|Araly1|493618|fgenesh2_kg.7__3051__AT5G35570.1 1868 0.0 > Ahg493618 jgi|Araly1|493618|fgenesh2_kg.7__3051__AT5G35570.1 Length=2359 Score = 1868 bits (1011), Expect = 0.0 Identities = 1215/1306 (93%), Gaps = 44/1306 (3%) Strand=Plus/Plus Query 40 AAAAAGATAGCAACAATCGAAGAAGAAGAGCTTGAAATGGGCCACCACCACGACGGTGGC 99 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAGATAGCAACAATC---GAAGAAGAGCTTGAAATGGGCCACCACCACGACGGTGGC 57 Query 100 GATGGCGTACCTCAACATCACGTCAACAGTCCTCGATTTTCCGGTCCAATGACTCGTCGT 159 |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||| Sbjct 58 GATGGCGTCCCTCAACATCATGTCAACAGCCCTCGATTTTCCGGTCCTATGACCCGTCGT 117 Query 160 GCTCAATCATTCAAACGCGGCGGTTCCGCTGGTA-GTAGTAGCAATAATAATAATACTCA 218 |||||||| |||||||||||||||| | | || | |||||||| | |||||||| Sbjct 118 GCTCAATCTTTCAAACGCGGCGGTT-C-C-GG-AGGTAGTAGC------AGCAATACTCA 167 Query 219 CGTCGGTGTTAGTGGCGGTGATGGcaacaacaacaacaacaCTTCCTCGACCTTGAGAGT 278 | || ||||||||| ||||||||| | |||||||||||||| Sbjct 168 ---C-------GT--CGGTGATGG---------CAACAACAC-T--TCGACCTTGAGAGT 203 Query 279 TCATCACGAGATCGATCTACCGCTTAATTCACCTAGATCAGAGATTGTTTCTGGCTCTTC 338 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 204 TCACCACGAGATCGATCTGCCGCTTAATTCACCTAGATCAGAGATTGTTTCTGGTTCTTC 263 Query 339 CGGTTCAGATCCGAGTGGTGGATTTGATTCTGCTCTCAATAGAAAACATCAGACTTATGG 398 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 264 CGGTTCAGATCCGAGCGGTGGATTTGATTCTGCTCTCAATAGAAAGCATCAGACGTATGG 323 Query 399 TCAGTTGCGAGAGAGAGTTGTGAAAGGCTTGTTGAGGAAGCCGATGGGATCTGTTGTCTC 458 |||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| || Sbjct 324 GCAGTTGAGAGAGAGAGTTGTGAAAGGTTTGTTGAGGAAGCCCATGGGATCGGTTGTTTC 383 Query 459 GGATTTTAGTTTGAGAGAGAGGAAGAAACTTGGTCATTGGAtgttttttgcgttttgtgg 518 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 384 GGATTTTAGTTTGAGAGAGAGGAAGAAACTTGGCCATTGGATGTTTTTTGCCTTTTGTGG 443 Query 519 tgtttgtttgtttttgggtgttttCAAGATTTGTGCTACTGGTTGGCTTGGATCTGCCAT 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 TGTTTGTTTGTTTTTGGGTGTTTTCAAGATTTGTGCTACTGGTTGGCTTGGATCTGCCAT 503 Query 579 TGATGGTGCTGCTTCCGATCAGGATTTATCTA--TC----CCCCGAGTAAATCTACTTGA 632 |||||||||||||||| ||||||||||||| | || |||||||||||||||||||| Sbjct 504 TGATGGTGCTGCTTCCCATCAGGATTTATCCAACTCAATTCCCCGAGTAAATCTACTTGA 563 Query 633 TCATAGCTCCCATGATTATATCTATAAAGATGGAGGGAATGATGTTGATCCTACTTTGGT 692 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 564 TCATAGCTCCCATGATTATATCTATAAAGATGGAGGGAATGATGTTGATCCAACTTTGGT 623 Query 693 TATGGTTGCTTCAGACGTGGTGGGTGATCAAAACAGTGTAGTTGAATTTTCAGGTGTCTG 752 ||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||| Sbjct 624 TATGGTTGCTTCAGATGTTGTGGGTGACCAAAACAGTGTAGTTGAATATTCAGGTGTCTG 683 Query 753 GGCAAAACCTGAGAGTGGAAATTTCTCGCGGTGCATTGACAGTTCAAGGAGTCGCAAAAA 812 ||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| Sbjct 684 GGCAAAACCTGAGAGTGGAAATTTCTCACGGTGCATTGACAATCCAAGGAGTCGCAAAAA 743 Query 813 GTTGGGTGCTAATACGAATGGCTATCTTCTCATAAATGCTAATGGAGGACTAAACCAAAT 872 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 744 GTTAGGTGCTAATACGAATGGCTACCTTCTCATAAATGCTAATGGAGGACTAAACCAAAT 803 Query 873 GAGATTTGGGATATGTGATATGGTTGCAGTGGCTAAAATTATGAAGGCAACTTTGGTTCT 932 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 804 GAGATTTGGGATATGTGATATGGTTGCAGTTGCTAAAATTATGAAGGCAACTTTGGTTCT 863 Query 933 TCCCTCACTTGATCACAGCTCATATTGGGCAGATGACAGTGGCTTTAAGGATCTATTTGA 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 864 TCCCTCACTTGATCACAGCTCATATTGGGCAGATGACAGTGGCTTTAAGGATCTATTTGA 923 Query 993 TTGGCAACACTTCATTGAGGAGTTGAAGGATGATATTCACATAGTTGAGATGCTGCCATC 1052 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 924 TTGGCAACACTTCATAGAGGAGTTGAAGGATGATATTCACATAGTTGAGATGCTGCCATC 983 Query 1053 AGAATTAGCCGGAATCGAGCCTTTCGTTAAGACACCCATTTCGTGGTCTAAGGTTGGTTA 1112 ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 984 AGAATTAGCCGGAATTGAGCCTTTCGTTAAGACACCCATATCATGGTCTAAGGTTGGTTA 1043 Query 1113 CTACAAGAAAGAGGTCCTTCCGTTGTTGAAACAGCATATCGTAATGTACTTAACTCACAC 1172 |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 1044 CTACAAGAGAGAGGTCCTTCCATTGTTGAAACAGCATATTGTAATGTACTTAACTCACAC 1103 Query 1173 TGATTCTCGGCTTGCTAACAACGACCTGCCTGATTCTGTACAAAAGCTTCGTTGCCGAGT 1232 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 TGATTCTCGGCTCGCAAACAACGACCTGCCTGATTCTGTACAAAAGCTTCGTTGCCGAGT 1163 Query 1233 AAATTATAGGGCGCTGAAATATTCAGCTCCAATAGAGGAACTGGGAAACGTTCTAGTTTC 1292 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1164 AAATTACAGGGCACTGAAATATTCAGCTCCAATAGAGGAACTGGGAAACGTTCTAGTTTC 1223 Query 1293 TAGAATGAGGCAGGACAGAGGTCCATACCTTGCTCTTCATTTAAGG 1338 ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1224 TAGAATGAGGCAGAACAGAGGTCCATACCTTGCTCTTCATTTAAGG 1269 Score = 1596 bits (864), Expect = 0.0 Identities = 980/1034 (95%), Gaps = 15/1034 (1%) Strand=Plus/Plus Query 1337 GGTATGAGAAGGATATGCTGGCTTTCACAGGCTGCAGTCATAGTTTGACAGCTGAAGAAG 1396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 GGTATGAGAAGGATATGCTGGCTTTCACAGGCTGCAGTCATAGTTTGACAGCTGAAGAAG 1357 Query 1397 ACGAAGAATTACGACAGATGCGGTATGAGGTTAGTCACTGGAAGGAAAAAGAAATAAATG 1456 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1358 ACGAAGAATTACGACAGATGCGGTATGAAGTTAGTCACTGGAAGGAAAAAGAAATAAATG 1417 Query 1457 GAACAGAGAGAAGATTGCAAGGTGGTTGTCCGTTGACTCCAAGGGAAACCTCGCTTTTAC 1516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1418 GAACAGAGAGAAGATTGCAAGGTGGTTGTCCGTTGACTCCAAGGGAAACCTCGCTTTTAC 1477 Query 1517 TGAGGGCTTTGGAATTCCCATCCAGCTCCCGGATATACCTCGTAGCTGGTGAAGCATATG 1576 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1478 TAAGGGCTTTGGAATTCCCATCCAGCTCCCGGATTTACCTCGTAGCTGGTGAAGCATATG 1537 Query 1577 GAAATGGAAGCATGGATCCTCTCAACACAGACTTCCCCAACATTTTCTCACATTCAATTC 1636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1538 GAAATGGAAGCATGGATCCTCTCAACACAGACTTCCCCAACATTTTCTCACATTCAATTC 1597 Query 1637 TTGCCACCAAAGAAGAGCTGAGTCCTTTTAACAACCACCAGAATATGTTGGCTGGTTTAG 1696 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1598 TTGCCACCAAAGAAGAGCTGAGTCCTTTTAATAACCACCAGAATATGTTGGCTGGTTTAG 1657 Query 1697 ATTATATCGTTGCACTTCAGAGTGAGGTATTTCTCTACACATATGATGGGAACATGGCAA 1756 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1658 ATTATATTGTTGCACTTCAGAGTGAGGTATTTCTCTACACATATGATGGGAACATGGCAA 1717 Query 1757 AAGCAGTTCAAGGTCACAGGCGATTCGAAGACTTCAAGAAAACAATAAATCCAGACAAGA 1816 |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1718 AAGCGGTTCAAGGTCACAGGCGATTCGAGGACTTCAAAAAAACAATAAATCCAGACAAGA 1777 Query 1817 TGAACTTTGTGAAACTTGTTGATGCATTAGATGAGGGAAGAATTTCATGGAAAAAGTTCA 1876 ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| Sbjct 1778 TGAACTTTGTGAAACTTGTTGATGCGTTGGATGAGGGGAGAATTTCATGGAAAAAGTTCA 1837 Query 1877 GTTCCAAAGTGAAAAAGCTACATAAAGACCGAAACGGAGCTCCATATAATAGAGAGTCGG 1936 ||||||||||||||||||||||||||||||| || |||||||||||||| |||||| ||| Sbjct 1838 GTTCCAAAGTGAAAAAGCTACATAAAGACCGGAATGGAGCTCCATATAACAGAGAGCCGG 1897 Query 1937 GAGAGTTCCCGAAGCTGGAAGAGAGTTTCTACGCAAATCCTCTTCCCGGGTGTATTTGTG 1996 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | Sbjct 1898 GAGAGTTCCCGAAGCTGGAAGAGAGTTTTTACTCAAATCCTCTTCCCGGGTGTATTTGCG 1957 Query 1997 AGAATACAGAAGAAGAGGGTCTGATGCGACGTACATAAACATGGAGAGATGTCTCTAGTA 2056 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| Sbjct 1958 AGAATACAGAAGAAGAGGGTGTGATGCGACGTACATAAACATGGAGAGATGTTTCTGGTA 2017 Query 2057 ATAtttttttAGTAGCCTGAGATTTACAGTTAGCAAAAAA-GAAGAAGGGAATTGTGATT 2115 ||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 2018 ATATTATTT-AGTAGCCTGAGATTTACAGTTAGCAAAAAAAGAAGAAGAGAACTGTGATT 2076 Query 2116 TTTTGGTGTCCTGAAGCTCGAGAGGGTGATGATTACCAAAGCTCAAGACTGAGAAACTGG 2175 ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| Sbjct 2077 TTTTG-TGTCCTGAAGCTAGAGAGGGTGATGATTACCAAAGCTCAAGACT-AGAAAATGG 2134 Query 2176 TTTCAGAGACAGATTAGAAAACTACGGAGACAGTATCTTACTAGAATCGTTTACAAGGAA 2235 |||||||||||||||||| || |||||||||||||||||||| |||||||||| ||| || Sbjct 2135 TTTCAGAGACAGATTAGAGAAGTACGGAGACAGTATCTTACTGGAATCGTTTATAAGAAA 2194 Query 2236 GAAACTCCGCTCAATTGTT-A-C--C-G----ATAAAGCTCGGATTCAGCTATGCCATGG 2286 ||||||||||||||||||| | | | | ||||||||||| |||||||||||||||| Sbjct 2195 GAAACTCCGCTCAATTGTTCATCATCAGTCCGATAAAGCTCGGCTTCAGCTATGCCATGG 2254 Query 2287 AGATTTGTTGAAGTGGATACACCGAATAGGATTCACATTGTTTGTAACACTCTACAATTG 2346 |||||||||||||||| || || ||||||||||||||||||||||||||| ||||||| Sbjct 2255 AGATTTGTTGAAGTGGGTAAACAAAATAGGATTCACATTGTTTGTAACACT--ACAATTG 2312 Query 2347 TCACTAtttttttA 2360 ||| | || ||||| Sbjct 2313 TCATTGTTCTTTTA 2326 Score = 76.8 bits (41), Expect = 7e-13 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 2381 TTGTTCTTTTACACGCATTAATAACATAGAATATATATTGCTGC 2424 ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2316 TTGTTCTTTTACACGCATTAATAACATAGAATATATATTTCTGC 2359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91340407510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5