BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35570.1
Length=2424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493618 jgi|Araly1|493618|fgenesh2_kg.7__3051__AT5G35570.1 1868 0.0
> Ahg493618 jgi|Araly1|493618|fgenesh2_kg.7__3051__AT5G35570.1
Length=2359
Score = 1868 bits (1011), Expect = 0.0
Identities = 1215/1306 (93%), Gaps = 44/1306 (3%)
Strand=Plus/Plus
Query 40 AAAAAGATAGCAACAATCGAAGAAGAAGAGCTTGAAATGGGCCACCACCACGACGGTGGC 99
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGATAGCAACAATC---GAAGAAGAGCTTGAAATGGGCCACCACCACGACGGTGGC 57
Query 100 GATGGCGTACCTCAACATCACGTCAACAGTCCTCGATTTTCCGGTCCAATGACTCGTCGT 159
|||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct 58 GATGGCGTCCCTCAACATCATGTCAACAGCCCTCGATTTTCCGGTCCTATGACCCGTCGT 117
Query 160 GCTCAATCATTCAAACGCGGCGGTTCCGCTGGTA-GTAGTAGCAATAATAATAATACTCA 218
|||||||| |||||||||||||||| | | || | |||||||| | ||||||||
Sbjct 118 GCTCAATCTTTCAAACGCGGCGGTT-C-C-GG-AGGTAGTAGC------AGCAATACTCA 167
Query 219 CGTCGGTGTTAGTGGCGGTGATGGcaacaacaacaacaacaCTTCCTCGACCTTGAGAGT 278
| || ||||||||| ||||||||| | ||||||||||||||
Sbjct 168 ---C-------GT--CGGTGATGG---------CAACAACAC-T--TCGACCTTGAGAGT 203
Query 279 TCATCACGAGATCGATCTACCGCTTAATTCACCTAGATCAGAGATTGTTTCTGGCTCTTC 338
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 204 TCACCACGAGATCGATCTGCCGCTTAATTCACCTAGATCAGAGATTGTTTCTGGTTCTTC 263
Query 339 CGGTTCAGATCCGAGTGGTGGATTTGATTCTGCTCTCAATAGAAAACATCAGACTTATGG 398
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 264 CGGTTCAGATCCGAGCGGTGGATTTGATTCTGCTCTCAATAGAAAGCATCAGACGTATGG 323
Query 399 TCAGTTGCGAGAGAGAGTTGTGAAAGGCTTGTTGAGGAAGCCGATGGGATCTGTTGTCTC 458
|||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| ||
Sbjct 324 GCAGTTGAGAGAGAGAGTTGTGAAAGGTTTGTTGAGGAAGCCCATGGGATCGGTTGTTTC 383
Query 459 GGATTTTAGTTTGAGAGAGAGGAAGAAACTTGGTCATTGGAtgttttttgcgttttgtgg 518
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 384 GGATTTTAGTTTGAGAGAGAGGAAGAAACTTGGCCATTGGATGTTTTTTGCCTTTTGTGG 443
Query 519 tgtttgtttgtttttgggtgttttCAAGATTTGTGCTACTGGTTGGCTTGGATCTGCCAT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TGTTTGTTTGTTTTTGGGTGTTTTCAAGATTTGTGCTACTGGTTGGCTTGGATCTGCCAT 503
Query 579 TGATGGTGCTGCTTCCGATCAGGATTTATCTA--TC----CCCCGAGTAAATCTACTTGA 632
|||||||||||||||| ||||||||||||| | || ||||||||||||||||||||
Sbjct 504 TGATGGTGCTGCTTCCCATCAGGATTTATCCAACTCAATTCCCCGAGTAAATCTACTTGA 563
Query 633 TCATAGCTCCCATGATTATATCTATAAAGATGGAGGGAATGATGTTGATCCTACTTTGGT 692
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 564 TCATAGCTCCCATGATTATATCTATAAAGATGGAGGGAATGATGTTGATCCAACTTTGGT 623
Query 693 TATGGTTGCTTCAGACGTGGTGGGTGATCAAAACAGTGTAGTTGAATTTTCAGGTGTCTG 752
||||||||||||||| || |||||||| ||||||||||||||||||| ||||||||||||
Sbjct 624 TATGGTTGCTTCAGATGTTGTGGGTGACCAAAACAGTGTAGTTGAATATTCAGGTGTCTG 683
Query 753 GGCAAAACCTGAGAGTGGAAATTTCTCGCGGTGCATTGACAGTTCAAGGAGTCGCAAAAA 812
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 684 GGCAAAACCTGAGAGTGGAAATTTCTCACGGTGCATTGACAATCCAAGGAGTCGCAAAAA 743
Query 813 GTTGGGTGCTAATACGAATGGCTATCTTCTCATAAATGCTAATGGAGGACTAAACCAAAT 872
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 744 GTTAGGTGCTAATACGAATGGCTACCTTCTCATAAATGCTAATGGAGGACTAAACCAAAT 803
Query 873 GAGATTTGGGATATGTGATATGGTTGCAGTGGCTAAAATTATGAAGGCAACTTTGGTTCT 932
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 804 GAGATTTGGGATATGTGATATGGTTGCAGTTGCTAAAATTATGAAGGCAACTTTGGTTCT 863
Query 933 TCCCTCACTTGATCACAGCTCATATTGGGCAGATGACAGTGGCTTTAAGGATCTATTTGA 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TCCCTCACTTGATCACAGCTCATATTGGGCAGATGACAGTGGCTTTAAGGATCTATTTGA 923
Query 993 TTGGCAACACTTCATTGAGGAGTTGAAGGATGATATTCACATAGTTGAGATGCTGCCATC 1052
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TTGGCAACACTTCATAGAGGAGTTGAAGGATGATATTCACATAGTTGAGATGCTGCCATC 983
Query 1053 AGAATTAGCCGGAATCGAGCCTTTCGTTAAGACACCCATTTCGTGGTCTAAGGTTGGTTA 1112
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 984 AGAATTAGCCGGAATTGAGCCTTTCGTTAAGACACCCATATCATGGTCTAAGGTTGGTTA 1043
Query 1113 CTACAAGAAAGAGGTCCTTCCGTTGTTGAAACAGCATATCGTAATGTACTTAACTCACAC 1172
|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1044 CTACAAGAGAGAGGTCCTTCCATTGTTGAAACAGCATATTGTAATGTACTTAACTCACAC 1103
Query 1173 TGATTCTCGGCTTGCTAACAACGACCTGCCTGATTCTGTACAAAAGCTTCGTTGCCGAGT 1232
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TGATTCTCGGCTCGCAAACAACGACCTGCCTGATTCTGTACAAAAGCTTCGTTGCCGAGT 1163
Query 1233 AAATTATAGGGCGCTGAAATATTCAGCTCCAATAGAGGAACTGGGAAACGTTCTAGTTTC 1292
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AAATTACAGGGCACTGAAATATTCAGCTCCAATAGAGGAACTGGGAAACGTTCTAGTTTC 1223
Query 1293 TAGAATGAGGCAGGACAGAGGTCCATACCTTGCTCTTCATTTAAGG 1338
||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1224 TAGAATGAGGCAGAACAGAGGTCCATACCTTGCTCTTCATTTAAGG 1269
Score = 1596 bits (864), Expect = 0.0
Identities = 980/1034 (95%), Gaps = 15/1034 (1%)
Strand=Plus/Plus
Query 1337 GGTATGAGAAGGATATGCTGGCTTTCACAGGCTGCAGTCATAGTTTGACAGCTGAAGAAG 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GGTATGAGAAGGATATGCTGGCTTTCACAGGCTGCAGTCATAGTTTGACAGCTGAAGAAG 1357
Query 1397 ACGAAGAATTACGACAGATGCGGTATGAGGTTAGTCACTGGAAGGAAAAAGAAATAAATG 1456
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1358 ACGAAGAATTACGACAGATGCGGTATGAAGTTAGTCACTGGAAGGAAAAAGAAATAAATG 1417
Query 1457 GAACAGAGAGAAGATTGCAAGGTGGTTGTCCGTTGACTCCAAGGGAAACCTCGCTTTTAC 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GAACAGAGAGAAGATTGCAAGGTGGTTGTCCGTTGACTCCAAGGGAAACCTCGCTTTTAC 1477
Query 1517 TGAGGGCTTTGGAATTCCCATCCAGCTCCCGGATATACCTCGTAGCTGGTGAAGCATATG 1576
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1478 TAAGGGCTTTGGAATTCCCATCCAGCTCCCGGATTTACCTCGTAGCTGGTGAAGCATATG 1537
Query 1577 GAAATGGAAGCATGGATCCTCTCAACACAGACTTCCCCAACATTTTCTCACATTCAATTC 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 GAAATGGAAGCATGGATCCTCTCAACACAGACTTCCCCAACATTTTCTCACATTCAATTC 1597
Query 1637 TTGCCACCAAAGAAGAGCTGAGTCCTTTTAACAACCACCAGAATATGTTGGCTGGTTTAG 1696
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1598 TTGCCACCAAAGAAGAGCTGAGTCCTTTTAATAACCACCAGAATATGTTGGCTGGTTTAG 1657
Query 1697 ATTATATCGTTGCACTTCAGAGTGAGGTATTTCTCTACACATATGATGGGAACATGGCAA 1756
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 ATTATATTGTTGCACTTCAGAGTGAGGTATTTCTCTACACATATGATGGGAACATGGCAA 1717
Query 1757 AAGCAGTTCAAGGTCACAGGCGATTCGAAGACTTCAAGAAAACAATAAATCCAGACAAGA 1816
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1718 AAGCGGTTCAAGGTCACAGGCGATTCGAGGACTTCAAAAAAACAATAAATCCAGACAAGA 1777
Query 1817 TGAACTTTGTGAAACTTGTTGATGCATTAGATGAGGGAAGAATTTCATGGAAAAAGTTCA 1876
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1778 TGAACTTTGTGAAACTTGTTGATGCGTTGGATGAGGGGAGAATTTCATGGAAAAAGTTCA 1837
Query 1877 GTTCCAAAGTGAAAAAGCTACATAAAGACCGAAACGGAGCTCCATATAATAGAGAGTCGG 1936
||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||
Sbjct 1838 GTTCCAAAGTGAAAAAGCTACATAAAGACCGGAATGGAGCTCCATATAACAGAGAGCCGG 1897
Query 1937 GAGAGTTCCCGAAGCTGGAAGAGAGTTTCTACGCAAATCCTCTTCCCGGGTGTATTTGTG 1996
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 1898 GAGAGTTCCCGAAGCTGGAAGAGAGTTTTTACTCAAATCCTCTTCCCGGGTGTATTTGCG 1957
Query 1997 AGAATACAGAAGAAGAGGGTCTGATGCGACGTACATAAACATGGAGAGATGTCTCTAGTA 2056
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct 1958 AGAATACAGAAGAAGAGGGTGTGATGCGACGTACATAAACATGGAGAGATGTTTCTGGTA 2017
Query 2057 ATAtttttttAGTAGCCTGAGATTTACAGTTAGCAAAAAA-GAAGAAGGGAATTGTGATT 2115
||||| ||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 2018 ATATTATTT-AGTAGCCTGAGATTTACAGTTAGCAAAAAAAGAAGAAGAGAACTGTGATT 2076
Query 2116 TTTTGGTGTCCTGAAGCTCGAGAGGGTGATGATTACCAAAGCTCAAGACTGAGAAACTGG 2175
||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2077 TTTTG-TGTCCTGAAGCTAGAGAGGGTGATGATTACCAAAGCTCAAGACT-AGAAAATGG 2134
Query 2176 TTTCAGAGACAGATTAGAAAACTACGGAGACAGTATCTTACTAGAATCGTTTACAAGGAA 2235
|||||||||||||||||| || |||||||||||||||||||| |||||||||| ||| ||
Sbjct 2135 TTTCAGAGACAGATTAGAGAAGTACGGAGACAGTATCTTACTGGAATCGTTTATAAGAAA 2194
Query 2236 GAAACTCCGCTCAATTGTT-A-C--C-G----ATAAAGCTCGGATTCAGCTATGCCATGG 2286
||||||||||||||||||| | | | | ||||||||||| ||||||||||||||||
Sbjct 2195 GAAACTCCGCTCAATTGTTCATCATCAGTCCGATAAAGCTCGGCTTCAGCTATGCCATGG 2254
Query 2287 AGATTTGTTGAAGTGGATACACCGAATAGGATTCACATTGTTTGTAACACTCTACAATTG 2346
|||||||||||||||| || || ||||||||||||||||||||||||||| |||||||
Sbjct 2255 AGATTTGTTGAAGTGGGTAAACAAAATAGGATTCACATTGTTTGTAACACT--ACAATTG 2312
Query 2347 TCACTAtttttttA 2360
||| | || |||||
Sbjct 2313 TCATTGTTCTTTTA 2326
Score = 76.8 bits (41), Expect = 7e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 2381 TTGTTCTTTTACACGCATTAATAACATAGAATATATATTGCTGC 2424
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2316 TTGTTCTTTTACACGCATTAATAACATAGAATATATATTTCTGC 2359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91340407510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5