BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35590.1
Length=1075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493620 jgi|Araly1|493620|fgenesh2_kg.7__3053__AT5G35590.1 1434 0.0
Ahg930892 jgi|Araly1|930892|scaffold_303349.1 839 0.0
> Ahg493620 jgi|Araly1|493620|fgenesh2_kg.7__3053__AT5G35590.1
Length=1029
Score = 1434 bits (776), Expect = 0.0
Identities = 980/1071 (92%), Gaps = 44/1071 (4%)
Strand=Plus/Plus
Query 7 ATATACACATCTCTGATTCAACTCCACCGAATTCAGAAGATCGAAGAAGATGAGTAGAGG 66
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATATACACATCTCTGATTCAACTCCGGCGAATTCAGAAGATCGAAGAAGATGAGTAGAGG 60
Query 67 AAGCGGCGCTGGTTATGATCGTCACATCACTATCTTCTCACCGGAAGGTCGTCTCTTTCA 126
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AAGCGGCGCTGGTTATGATCGTCACATCACCATCTTCTCACCGGAAGGTCGTCTCTTTCA 120
Query 127 AGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTACTTCAATCGGAGTTCGTGG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTACTTCAATCGGAGTTCGTGG 180
Query 187 GAAAGATTCGGTTTGCGTCGTTACCCAGAAGAAAGTTCCTGACAAGCTTTTGGATCAGTC 246
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GAAAGATTCCGTTTGCGTCGTTACCCAGAAGAAAGTTCCGGACAAGCTTTTGGATCAGTC 240
Query 247 TAGTGTTACACATCTGTTCCCTATCACCAAGTACATTGGATTGGTAGCTACTGGCATTAC 306
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 241 TAGTGTTACACATCTGTTCCCGATTACCAAGTACATTGGATTGGTAGCTACTGGCATTAC 300
Query 307 AGCTGATGCAAGGTCTTTGGTTCAACAAGCAAGGAATCAAGCAGCTGAATTTCGGTTCAC 366
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCTGATGCAAGGTCTTTGGTCCAACAAGCAAGGAATCAAGCAGCTGAATTTCGGTTCAC 360
Query 367 TTATGGATATGAGATGCCTGTTGACATTCTTGCTAAATGGATAGCGGACAAGTCACAGGT 426
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTATGGATACGAGATGCCTGTCGACATTCTTGCTAAATGGATAGCGGACAAGTCACAGGT 420
Query 427 CTACACTCAACATGCTTACATGAGACCCCTTGGAGTTGTCGCTATGGTAATGGGTGTTGA 486
|||||||||||||||||||||||||||||||||||||| ||||||| || | || |||||
Sbjct 421 CTACACTCAACATGCTTACATGAGACCCCTTGGAGTTGGCGCTATGTTATTTGGCGTTGA 480
Query 487 TGAAGAGAATGGTCCCTTACTTTACAAATGTGACCCAGCTGGACATTTTTACGGTCACAA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGAAGAGAATGGTCCCTTACTTTACAAATGTGACCCAGCTGGACATTTTTACGGTCACAA 540
Query 547 GGCAACTAGTGCTGGTATGAAGGAACAAGAAGCAGTCAATTTCTTGGAGAAGAAAATGAA 606
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 GGCAACGAGTGCTGGTATGAAGGAACAAGAAGCAGTCAATTTCTTGGAAAAGAAAATGAA 600
Query 607 AGAAAACCCATCTTTCACATTTGATGAAACCGTGCAGACTGCCATATCGGCTTTGCAATC 666
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 AGAAAACCCAGCTTTCACATTTGATGAAACCGTGCAGACTGCCATATCCGCTTTGCAATC 660
Query 667 TGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTGAGGTAGGTGTGGTGAGAGCAGAGAA 726
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 TGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTGAGGTAGGAGTGGTGAGAGCAGAGAA 720
Query 727 CCCGGAATTCCGTGCATTGACAACGGAGGAGATTGAGGAGCATTTGACAGCCATTAGTGA 786
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCCAGAATTCCGTGCATTGACAACGGAGGAGATTGAGGAGCATTTGACAGCCATTAGTGA 780
Query 787 ACGAGACTGATCAACTTAGTGAAACAAGTGTGAGTTACGTTGCTTCGCTTCTATCAGACA 846
|||||||||||| |||||||||||||||||||||||||| | | | | ||
Sbjct 781 ACGAGACTGATCGTTTTAGTGAAACAAGTGTGAGTTACGTTAAGT-G-----A-C---CA 830
Query 847 TTCCTCTAAAGTGACCACTCTCCATCGATCTTTTGTTTGGTCTTCCTTCCATAATTTAAT 906
| ||| ||| | | ||| | ||| |||||||||| ||| | | ||| ||
Sbjct 831 --C-TCT-------CCA-T-TA-ATC--T-TTT-GTTTGGTCTTGCTT--A-A-TTTGAT 869
Query 907 TTACTTAGTCAA-CCCAGCAAACTTGAAAAACAAAAATGCACTGTAATGCTTAAGGCTGT 965
|||||||| ||| ||| ||||||||| |||||||| | | | | || ||||||||||
Sbjct 870 TTACTTAG-CAAACCCTCCAAACTTGAGAAACAAAA--GAAAAGCACTG-TTAAGGCTGT 925
Query 966 GAGAGTTTCCGAGTCTTTTGACTCTTCAGAAATGACACCAACTTTACTCATATCATCACT 1025
|| || |||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 926 GAAAGCATCCGTGTCTTTTGACTTTTCAGAAATGAC------TTCACTCATATCATCACT 979
Query 1026 TTCTAGCTTTTTATTTCTATCGTTGCAGTTGCT-GTGTCTTCGTCTTCACC 1075
|||||||||||| |||||||| | |||||| || |||||||||||||||||
Sbjct 980 TTCTAGCTTTTTCTTTCTATCATAGCAGTT-CTTGTGTCTTCGTCTTCACC 1029
> Ahg930892 jgi|Araly1|930892|scaffold_303349.1
Length=781
Score = 839 bits (454), Expect = 0.0
Identities = 661/761 (87%), Gaps = 13/761 (2%)
Strand=Plus/Plus
Query 49 GAAGAAGATGAGTAGAGGAAGCGGCGCTGGTTATGATCGTCACATCACTATCTTCTCACC 108
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 14 GAAGAAGATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCACC 73
Query 109 GGAAGGTCGTCTCTTTCAAGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTAC 168
||||||||||||||| ||||| || ||||| ||||| ||||||||| ||||||| || ||
Sbjct 74 GGAAGGTCGTCTCTTCCAAGTAGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCAC 133
Query 169 TTCAATCGGAGTTCGTGGGAAAGATTCGGTTTGCGTCGTTACCCAGAAGAAAGTTCCTGA 228
|| ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 134 ATCGATCGGTGTTCGAGGGAAAGATTCAGTATGCGTCGTTACCCAGAAGAAAGTTCCGGA 193
Query 229 CAAGCTTTTGGATCAGTCTAGTGTTA-CACATCTGTTCCCTATCACCAAGTACATTGGAT 287
||||||| | ||||||||||||| || | || || || ||| | || |||||| ||||||
Sbjct 194 CAAGCTTCTAGATCAGTCTAGTG-TATCTCACCTTTTTCCTGTTACTAAGTACCTTGGAT 252
Query 288 TGGTAGCTACTGGCATTACAGCTGATGCAAGGTCTTTGGTTCAACAAGCAAGGAATCAAG 347
| |||| |||||||| ||||||||| ||||||| ||||| ||||||||||||||| | |
Sbjct 253 TATTAGCCACTGGCATGACAGCTGATTCAAGGTCGTTGGTACAACAAGCAAGGAATGAGG 312
Query 348 CAGCTGAATTTCGGTT-CACTTATGGATATGAGATGCCTGTTGACATTCTTGCTAAATGG 406
||||||| ||| |||| || |||||||| |||||||||| || |||||||||||||||
Sbjct 313 CAGCTGAGTTTAGGTTCCA-ATATGGATACGAGATGCCTGCGGATATTCTTGCTAAATGG 371
Query 407 ATAGCGGACAAGTCACAGGTCTACACTCAACATGCTTACATGAGACCCCTTGGAGTTGTC 466
|| || || ||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 372 ATTGCAGATAAGTCACAGGTTTACACTCAACATGCTTATATGAGACCCCTTGGAGTAGTT 431
Query 467 GCTATGGTAATGGGTGTTGATGAAGAGA-ATGGTCCCT-TACTTTACAAATGTGACCCAG 524
|| ||||| ||||| |||||||||||| | || ||| |||||||||| ||||||||||
Sbjct 432 GCCATGGTTCTGGGTATTGATGAAGAGAGA-GG-ACCTCTACTTTACAAGTGTGACCCAG 489
Query 525 CTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAGGAACAAGAAGCAGTCA 584
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 490 CTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCA 549
Query 585 ATTTCTTGGAGAAGAAAATGAAAGAAAACCCAT-CTTTCACATTTGATGAAACCGTGCAG 643
||||||||||||||||||||||||||||||| | | ||||||| ||||||||| || |||
Sbjct 550 ATTTCTTGGAGAAGAAAATGAAAGAAAACCC-TGCCTTCACATATGATGAAACAGTACAG 608
Query 644 ACTGCCATATCGGCTTTGCAATCTGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTGAG 703
||||| ||||| ||| | |||||||||||||||||||||||||| || ||||| ||||||
Sbjct 609 ACTGCTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAG 668
Query 704 GTAGGTGTGGTGAGAGCAGA-GAACCCGGAATTCCGTGCATTGACAACGGAGGAGATTGA 762
|| || || |||||||| || || ||| |||||| | ||| ||| |||||||| ||
Sbjct 669 GTGGGAGTTGTGAGAGCTGATGA-CCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATCGA 727
Query 763 GGAGCATTTGACAGCCATTAGTGAACGAGACTGATCAACTT 803
||||| ||||| |||||||||||||| ||||||||| |||
Sbjct 728 CGAGCACTTGACGGCCATTAGTGAACGTGACTGATCA-CTT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40029062850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5