BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35600.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947108 jgi|Araly1|947108|scaffold_703337.1 536 1e-151
Ahg936024 jgi|Araly1|936024|scaffold_500215.1 536 1e-151
Ahg897670 jgi|Araly1|897670|Al_scaffold_0005_1636 483 2e-135
> Ahg947108 jgi|Araly1|947108|scaffold_703337.1
Length=492
Score = 536 bits (290), Expect = 1e-151
Identities = 369/407 (91%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 305 ATGTGGA-TTGGGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT 363
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ATGTGGACTT-GGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT 104
Query 364 GGTGGTTCTATTAGCGCCGCCGCGAAATTGAACCGTCAAGAAGCCGATATTGCCATAAAC 423
|||||| |||||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 105 GGTGGTACTATTAGCGCCGCCGCTAAATTGAACCGTCAAGAAGCAGATATTGCTATCAAT 164
Query 424 TGGGCCGGTGGTATGCACCATGTGAAGAAAGATAAAGCTTCTGGCTTTGGTTATGTCAAT 483
||||||||||| ||||| ||| |||||||||||| ||||||| |||||| |||| ||||
Sbjct 165 TGGGCCGGTGGGATGCAAAATGCGAAGAAAGATAAGGCTTCTGACTTTGGCTATGCCAAT 224
Query 484 GACGTTGTGCTTGCGATTCTCGAGTTACT-AAAATCTTTCAAGAGAGTTCTCTACATAGA 542
||||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||||
Sbjct 225 GACGTTGTGCTTGGGATTCTCGAGTTGCTCAAAA-CTTTCAAGAGAGTTCTCTACGTAGA 283
Query 543 AATTGGTTTTCCTCATGGTGATGAAGTGGAAGAAGCATTTAAGGATACTGATAGAGTAAT 602
||||| |||| |||||| |||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 284 TATTGGCTTTCGTCATGGGGATGGAGTGGAAGAAGCATTTAAGGACACTGATAGAGTTAT 343
Query 603 GACTGTTTCTTTCCACAAAGTTGGGGACACCGGAGACATAAGTGACTATGGGGAAGGGAA 662
|||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| ||
Sbjct 344 GACTGTTTATTTCCACAAAATTGGGGACTCCGGAGACATAAGTGACTTTGGGGAAGG-AA 402
Query 663 -AGGACAATACTATTCACTCAATGCACCATTAAAGGATGGTTTGGAT 708
||||||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct 403 GAGGACAATATTATTCACTAAATGCACCATTGAAGGATGGTTTAGAT 449
> Ahg936024 jgi|Araly1|936024|scaffold_500215.1
Length=492
Score = 536 bits (290), Expect = 1e-151
Identities = 369/407 (91%), Gaps = 6/407 (1%)
Strand=Plus/Plus
Query 305 ATGTGGA-TTGGGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT 363
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ATGTGGACTT-GGACGGTCCTGTCTTCCATAACCTCTTCGATTATTGTCGTGCTTACGCT 104
Query 364 GGTGGTTCTATTAGCGCCGCCGCGAAATTGAACCGTCAAGAAGCCGATATTGCCATAAAC 423
|||||| |||||||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 105 GGTGGTACTATTAGCGCCGCCGCTAAATTGAACCGTCAAGAAGCAGATATTGCTATCAAT 164
Query 424 TGGGCCGGTGGTATGCACCATGTGAAGAAAGATAAAGCTTCTGGCTTTGGTTATGTCAAT 483
||||||||||| ||||| ||| |||||||||||| ||||||| |||||| |||| ||||
Sbjct 165 TGGGCCGGTGGGATGCAAAATGCGAAGAAAGATAAGGCTTCTGACTTTGGCTATGCCAAT 224
Query 484 GACGTTGTGCTTGCGATTCTCGAGTTACT-AAAATCTTTCAAGAGAGTTCTCTACATAGA 542
||||||||||||| |||||||||||| || |||| |||||||||||||||||||| ||||
Sbjct 225 GACGTTGTGCTTGGGATTCTCGAGTTGCTCAAAA-CTTTCAAGAGAGTTCTCTACGTAGA 283
Query 543 AATTGGTTTTCCTCATGGTGATGAAGTGGAAGAAGCATTTAAGGATACTGATAGAGTAAT 602
||||| |||| |||||| |||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 284 TATTGGCTTTCGTCATGGGGATGGAGTGGAAGAAGCATTTAAGGACACTGATAGAGTTAT 343
Query 603 GACTGTTTCTTTCCACAAAGTTGGGGACACCGGAGACATAAGTGACTATGGGGAAGGGAA 662
|||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||| ||
Sbjct 344 GACTGTTTATTTCCACAAAATTGGGGACTCCGGAGACATAAGTGACTTTGGGGAAGG-AA 402
Query 663 -AGGACAATACTATTCACTCAATGCACCATTAAAGGATGGTTTGGAT 708
||||||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct 403 GAGGACAATATTATTCACTAAATGCACCATTGAAGGATGGTTTAGAT 449
> Ahg897670 jgi|Araly1|897670|Al_scaffold_0005_1636
Length=1212
Score = 483 bits (261), Expect = 2e-135
Identities = 685/881 (78%), Gaps = 63/881 (7%)
Strand=Plus/Plus
Query 118 CACAACCTCATCCTCAGC-TATAACCTCCACCGCCACATGGAAATCAACCACCCAGACCT 176
||||| |||||||||| | ||| |||| |||||||||||||||||| || |||| | ||
Sbjct 115 CACAAGCTCATCCTCA-CATATGGCCTCGACCGCCACATGGAAATCAGCCGCCCATATCT 173
Query 177 CGCCGATGCTTCCGATTTCGA-AAAATTCCACTCGCTGGAGTATAT-CAACTTCCTCAAA 234
||||| | || ||||||| | | |||||||||| | ||||||||| ||| ||||||
Sbjct 174 CGCCGGCGTTTTCGATTTC-ACACAATTCCACTCACCGGAGTATATCCAA-TTCCTCGCC 231
Query 235 TCCGTCACGCCGGA--AACCGTAACCGATCCTCATCCTTC-CGTCTCTGA-AAACCTCAA 290
||| | ||||| || || ||| |||||| ||| || || || | | ||| ||
Sbjct 232 TCCCTTACGCC-GATGAA-TTTAAAGGATCCT--TCCGTCTCG-CT-TAACAAAAGTC-- 283
Query 291 GC-GCTTCAACGTAGATGTGGATTGG------GACGGTCCTGTCTTCCATAACCTCTTCG 343
|| |||| || |||||||| | || || || || ||||| | ||||||||
Sbjct 284 GCTTCTTCGACCTAGATGTGAACCGGCACACAAACAGTACTATCTTCAACGGCCTCTTCG 343
Query 344 ATTATTGTCGTGCTTAC-GCTGGTGGTTCTATT-AGCGCCGCCG-CGAAATTGAACCGTC 400
||||||| || || | | |||||||||||| || |||||||||| | |||||||||||||
Sbjct 344 ATTATTGCCGCGCCT-CTGCTGGTGGTTCT-TTAAGCGCCGCCGTC-AAATTGAACCGTC 400
Query 401 AAGAAGCCGATATTGCCATAAACTGGGCCGGTGGTATGCACCATGTGAAGAAAGATAAAG 460
|||||||||||||| || || ||||||||||| ||||||| || ||| ||| |
Sbjct 401 GGGAAGCCGATATTGCTATCAATTGGGCCGGTGGGATGCACCGTGCCAAGCGTGATCGTG 460
Query 461 CTTCTGGCTTT-GGTTATGTCAATGACGTTGTGCTTGCGATT-CTCGAGTTACT-AAAAT 517
||||||||||| | || |||||||||||||||||||||||| | |||||| || || |
Sbjct 461 CTTCTGGCTTTAGCTT-CGTCAATGACGTTGTGCTTGCGATTGC-CGAGTTGCTCAAGGT 518
Query 518 CTTTCAAGAGAGTTCTCTACATAGAAATTGGTTTTCC-TCATGGTGATGAAGTGGAAGAA 576
||||||| |||||||||||||||| ||||| |||| |||||| |||| ||||||||||
Sbjct 519 -TTTCAAGCGAGTTCTCTACATAGATATTGG-CTTCCGTCATGGGGATGCAGTGGAAGAA 576
Query 577 GCATTTAAGGATACTGATAGAGTAATGACTGTTTCTTTCCACAAAGT-TGGGGACAC-CG 634
|||||| | |||| |||||||| ||||||||||||||||||| | | | |||||| |
Sbjct 577 GCATTTTACAATACGGATAGAGTTATGACTGTTTCTTTCCACACA-TATACGGACACAC- 634
Query 635 GAGACATAAGTGACTATGGGGAAGGGAAAGGACAATACTATTCACTCAATGCACCATTAA 694
| ||| ||| || | | | |||| | | ||||| || || ||||||||||
Sbjct 635 CTTTCCCAAGAGAC---GGAG-ACAG-AAGG-GAGTTGTATTCTCTAAAAGCACCATTAA 688
Query 695 AGGATGGTTTGGATGATTTTAGTCTTCGTGGTTTGTTCATTCCTGTTATCCAC-AGAGCT 753
|| |||| | | ||| |||||||| ||||||| ||||||||| || || ||
Sbjct 689 AGAATGGGCTCAAAGATAAAAGTCTTCGCAACTTGTTCAGACCTGTTATCAACAAG-GCA 747
Query 754 ATGGAAATCTATGAGCCAGAAGTAATTGTTCTTCAGTGTGGTGCTGATTCTTTAGCTGGT 813
||| || | ||| |||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 748 ATGCAAGTTTATCAGCCAGAAGTTGTTGTTCTTCAGTGTGGTGCTGATTCATTAGCTGGT 807
Query 814 GATCCGTTTGGTACATTCAACTTGTCTA-TCAAGGGTCATGGTGATTGCT-TAC-AGTAC 870
|| ||| ||||||||||||| | |||||||||| |||| ||| | | | |||||
Sbjct 808 GA----TTT--TACATTCAACTTG-AAAGTCAAGGGTCACGGTGCTTG-TCT-CGAGTAC 858
Query 871 GTAAGATCTTTTAATGTTCCTCTCATGATCTTGGGGGGTGGAGGTTATACTCTTCCAAAT 930
|||||||||||||||||||||||||| ||||||| ||||| |||| |||| ||| | ||
Sbjct 859 ATAAGATCTTTTAATGTTCCTCTCATGGTCTTGGGTGGTGGTGGTTCTACTTTTCGACAT 918
Query 931 GTTGCTCGTTGCTGGTGCTATGAGACGGCGATTGCGGTTGG 971
|||||||||||||||||||||||||| |||||||| |||||
Sbjct 919 GTTGCTCGTTGCTGGTGCTATGAGACAGCGATTGCTGTTGG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5