BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G35660.1

Length=1251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891161 jgi|Araly1|891161|Al_scaffold_0007_3147                    582    2e-165


> Ahg891161 jgi|Araly1|891161|Al_scaffold_0007_3147
Length=672

 Score =  582 bits (315),  Expect = 2e-165
 Identities = 423/472 (90%), Gaps = 20/472 (4%)
 Strand=Plus/Plus

Query  13   ATGAATACGAAAACGTTTATTGTATGGTTTCTTTTGGTAGCGGCGGTTGTTGTAGCTGTT  72
            ||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||||| 
Sbjct  1    ATGAATACGAAAACGTTAATAGTATGGTTTCTTTTGTTAGCGGCTGTTGTTGTAGCTGTC  60

Query  73   GCGGCAGAGACTTCCGTGGATGACAAGAAACAAGGTGAAAAGCAAGTAGAGATACCAACC  132
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCTGCAGAGACTTCCGTGGATGACAAGAAACAAGGTGAAAAGCAAGTAGAGATACCAACC  120

Query  133  GTAGAAGG-AAAAA--ACGACGCTAAGGATAGTCTCAATAAAGGAGACGTTGGTGTTGAG  189
            |||||||| |||||  ||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct  121  GTAGAAGGGAAAAACGACGACGCTAAGGATACTCTCAATCAAGGAGACGTTGGCGTTGAG  180

Query  190  GCTACCGTTGAGAAAGAGGAAGAAAACAATTATGAAATTGATCAAC-ATGGTGGGGGATG  248
            ||||| |||||||||||||||||||||| ||||||| ||||||||  | || || |||||
Sbjct  181  GCTACGGTTGAGAAAGAGGAAGAAAACAGTTATGAAGTTGATCAAGGA-GGAGGAGGATG  239

Query  249  GAAGGGAGGCGGCGGCC-ATG-G-TGGGGGATGGAAAGGAGGCGGCGGCC-ATG-G-TGG  302
            ||| |||||||| |||| | | | |||||||||||| ||||| || |||| | | | |||
Sbjct  240  GAAAGGAGGCGGTGGCCGAGGAGGTGGGGGATGGAAGGGAGGTGGTGGCCGAGGAGGTGG  299

Query  303  GGGATGGAAAGGAGGCGGTGGCC-atg-g-tgggggatggaagggaggcggtggcc-atg  358
            ||||||||| ||||||||||||| | | | |||||||||||||||||||||||||| | |
Sbjct  300  GGGATGGAAGGGAGGCGGTGGCCGAGGAGGTGGGGGATGGAAGGGAGGCGGTGGCCGAGG  359

Query  359  -g-tgggggatggaaaggaggaggtggtggtcgaggaggtggtggtggaggcggtgCTGA  416
             | ||| |||||||||||||| ||||||   |||||||||||||||||||||||||||||
Sbjct  360  AGGTGGAGGATGGAAAGGAGGCGGTGGT---CGAGGAGGTGGTGGTGGAGGCGGTGCTGA  416

Query  417  GTTAGAGACCGTAGAAATAGATAGTGCGTCAGATGAGGATGTACAAAATTAT  468
            |||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  417  GTTAGACACCGTAGAAATAGATAGTGCGTCAGATGATGATGTACAAAATTAT  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46738696242


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5