BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35670.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493625 jgi|Araly1|493625|fgenesh2_kg.7__3058__AT5G35670.1 1962 0.0
> Ahg493625 jgi|Araly1|493625|fgenesh2_kg.7__3058__AT5G35670.1
Length=1517
Score = 1962 bits (1062), Expect = 0.0
Identities = 1358/1497 (91%), Gaps = 35/1497 (2%)
Strand=Plus/Plus
Query 1 GTGTTTGTTCCCATTTCTCAATTCCCAAGTTCTTTATCCAAATTGTTCTGAAACATAGAG 60
||||||||||||||||||||||| |||||||||| || ||||||| |||||||||
Sbjct 1 GTGTTTGTTCCCATTTCTCAATTTCCAAGTTCTTAATTAAAATTGTCCTGAAACAT---- 56
Query 61 AGAAACAATGGGTGTTACAGGAGGATTAGTCAGAAGCATTTTCTTCAGGAACAAATCATT 120
|| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 57 AGCAA-TATGGGTGTTACAGGAGGATTAGTAAGAAGCATTTTCTTCAGAAACAAATCATT 115
Query 121 TGGAGCTCATGACTACAACAATGGAAGAGGCAATCTAGGAGAGAAGAAACGATGGAGCTC 180
|||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||
Sbjct 116 TGGAGCTCATGACTACAACATTGGAAGAAGCAATCTTGGAGAGAAGAAAAGATGGAGCTC 175
Query 181 GGTTAGATCATACCTTTGCGGAGATGAATTTAACTCTGTTCGCGCTGTGAATGATTCAGA 240
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 176 GGTTAGATCGTACCTTTGCGGAGATGAATTCAACTCTGTTCTCGCTGTGAATGATTCAGA 235
Query 241 ATCGATAAAGGATTCTGAGGCTCT-TCTTACAATGTCTCAGCAACTGAGTTCAGAGTTCG 299
|||| | ||||||||||| ||||| | |||||||||||||||| |||| ||||||||| |
Sbjct 236 ATCGGTCAAGGATTCTGATGCTCTGT-TTACAATGTCTCAGCATCTGAATTCAGAGTTGG 294
Query 300 GTATGCCTTTTGGTTCGGTTATCGCAATCGAAGATTCAGCTTCTGTG-AGACATTTGGAG 358
|| | ||||||||||||||||||||||| |||||||||||||||||| || | |||||||
Sbjct 295 GTGTACCTTTTGGTTCGGTTATCGCAATTGAAGATTCAGCTTCTGTGAAG-CGTTTGGAG 353
Query 359 GATGAGGACTCTGGTTCCGTTAAGAGCTCTGAGGCAACAGTGACTCAACCTTTACTGGAG 418
|| || ||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 354 GACGATGACTCTGTTTCCGTTAAGAGCTCTGAGGCAACAGTGACTCAACCTATACAGGAG 413
Query 419 GAGAAATCGAAAGGACTGGA-TTGTTATCTAAAAGAAGAAGATGTTGAAGATAACCAAAG 477
||||||||||||| ||| || | |||| |||||||||||||| || |||||||||||
Sbjct 414 GAGAAATCGAAAGTACT-GAGTCATTATGTAAAAGAAGAAGATATT---GATAACCAAAG 469
Query 478 CGAAGCAACAGAGACACACATACCCAAGAAGCATCAGACTACTCCAATCTCCAAGTTGTT 537
||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |
Sbjct 470 CGAAGCAACAGAGACACACATACCCAAGAGGCATCAAACTACCCCAATCTCCAAGTTGCT 529
Query 538 CCTCGAAGAAGACGCTGCAGTCATAATTCAGTCAGCATTCAGGAGTTACCTGGCAATACG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CCTCGAAGAAGACGCTGCAGTCATAATTCAGTCAGCATTCAGGAGTTACCTGGCAATACG 589
Query 598 CCGGAGCAAAGAAGAAGAGGAAACATTTGCTAAGGAGGAGAGCTTCTCAGGAGAGGAATC 657
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 590 CCGGAGCAAAGAAGAAGAGAAAACATTTGCTAAGGAGGAGAGCTTCTCAGGAGACGAATC 649
Query 658 TCAAGACAATGCATCCATGGGGACATCACTAGAAGCTCAGACAGGTAATTCCGTGAAAGC 717
||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 650 TCAAGGGAATGTATCCATGGGGACATCACTAGAAGCTCAGACAGGTAGTTCTGTGAAAGC 709
Query 718 ACCATTTTTCAGGAGAAAGCGAGTATCTGCGAATCGAAGAACACTACAGAAGAAC-AACA 776
||| |||||||||||||| ||||||||||| ||||||||| ||||||| |||||| || |
Sbjct 710 ACCGTTTTTCAGGAGAAAACGAGTATCTGCAAATCGAAGATCACTACACAAGAACCAA-A 768
Query 777 CTCAAGTTCTGAGGATAAAGGAAGACTGGGATGATAGTACAGTGAGCAGCACCATATCAA 836
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 769 CTCAAATTCTGAGGATAAAGGAAGACTGGGATGATAGCACAGTGAGCAGCACCATATCAA 828
Query 837 AATCAAGGATTCAAAGCAGAGTCGAAGCAATGACAAAACGGGAGAGAGCACTTGCGTATG 896
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 829 AATCGAGGATTCAAAGCAGAATCGAAGCAATGACAAAACGGGAGAGAGCACTTGCTTATG 888
Query 897 CATTTTCACAGCAGCTAAGAATTTGCTCAAAGAAGAAACAAATAGATCGTAGCAGTGAAG 956
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 889 CATTTTCACAGCAGCTAAGAATTTGCTCAAAGAAGAAGCAAATGGATCGTAGCAGTGAAG 948
Query 957 ATGATTCCAATATCGGTTGGAGTTGGTTAGAACGCTGGATGGCAACCCGTGTACCAGACA 1016
| ||||| || ||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 949 ACGATTCTAACATCAGTTGGAGTTGGCTAGAACGCTGGATGGCAACCCGAGTACCAGACA 1008
Query 1017 GCATTCCAATTGAACC-AAGA-A--CA----GA-TG-T-T-GCAACGAAAAATCAAAGCT 1064
| ||||||||||||| || | | || || || | | ||||||||||||||||| |
Sbjct 1009 GTATTCCAATTGAACTGAAAACAAACATTCAGACTGATGTTGCAACGAAAAATCAAAGAT 1068
Query 1065 TGATAAGAAAGAATAGAGCTTTTGGTACAGCTGGCGAGTTGGAGAGCTGTGCTTCCAACG 1124
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1069 TGATAAGAAAGAATAGATCTTTTGGTATAGCTGGCGAGTTGGAGAGCTGTGCTTCCAACG 1128
Query 1125 ACCTACCTCTCCATTTTGAAAGCATATCAGAGACACAAGGAGATGCAACTACAGTTTTGC 1184
| ||||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1129 ATCTACCTCTCCAGTTTGAAAGCATATCAGAGACACAAGAAGATGAAACTAAAGCTTTGC 1188
Query 1185 AGACCGAAAAAAGTAGTTTTAA-ACCAAGTATATCTAAGCGTAAATCTGTTCCAAGCTAC 1243
|||||||||| || ||| | || | | |||||||||||||| ||||||||||||||||||
Sbjct 1189 AGACCGAAAAGAGCAGTCT-AAGAGCGAGTATATCTAAGCGCAAATCTGTTCCAAGCTAC 1247
Query 1244 AAAAGCCAGAGAAAGCATCACAAGCTTCAGGCCACCAAAAGTGATCTGCAACAACAAACA 1303
||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1248 AAAAGCCAGAGAAGGCATAACAGGCTTCAGGTAACCAAAAGTGATCTGCAACAACAAACA 1307
Query 1304 AAGAAAGCAAAGAAGGCCAAAACCACACCCACAAGCTGCAAAACAGGAAACGAATGCGAA 1363
|||||||| ||||||||||| ||||||||| |||||||||||| |||||| |||||||||
Sbjct 1308 AAGAAAGCTAAGAAGGCCAAGACCACACCCTCAAGCTGCAAAAGAGGAAATGAATGCGAA 1367
Query 1364 GAAACCTCACATAAGCTAAATAGCAGCACCTAAGATAAGCATTACCTGTAAATCTTTGCA 1423
||||||||||| ||||||| |||||||| | |||||| | |||||||||||||||||||
Sbjct 1368 GAAACCTCACAGAAGCTAAGTAGCAGCAAATGAGATAATCTTTACCTGTAAATCTTTGCA 1427
Query 1424 TTTAAATCACAAAAGTTTGTTCTTTCGAATCAGATAACAACTTTCTGTAAATTATTT 1480
||||| | |||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 1428 TTTAAGTAACAAAAGTTTGTGC-----AATCTGATAACAACTTTCTGTAAATTATTT 1479
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1504 TAGTAAGGGATAAGAAACTGGAAACCCCAGAAATACAT 1541
||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TAGTAAGGGATAAGAAACTGGAAACCCCAGAAATACAT 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5