BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G35680.3

Length=758
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947205 jgi|Araly1|947205|scaffold_703434.1                        597    4e-170
  Ahg930770 jgi|Araly1|930770|scaffold_303227.1                        499    1e-140
  Ahg493625 jgi|Araly1|493625|fgenesh2_kg.7__3058__AT5G35670.1        71.3    1e-11 


> Ahg947205 jgi|Araly1|947205|scaffold_703434.1
Length=481

 Score =  597 bits (323),  Expect = 4e-170
 Identities = 365/386 (95%), Gaps = 0/386 (0%)
 Strand=Plus/Plus

Query  136  GAGACGATGCCgaagaacaaaggaaagggaggaaagaacaggaagagaggaaagaacgaa  195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  18   GAGACGATGCCGAAGAACAAAGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAA  77

Query  196  gCTGATGACGAAAAGCGAGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTT  255
            ||||||||||| ||||| |||||||| |||||||||||||| ||||| || |||||||||
Sbjct  78   GCTGATGACGAGAAGCGCGAGCTTATTTTCAAAGAAGATGGGCAAGAGTATGCACAAGTT  137

Query  256  CTTCGTATGCTCGGTAACGGTCGATGCGACGTTATGTGCATTGACGGTGTTAAGCGTCTT  315
            ||||||||||||||||| || || || || ||||||||||||||||||||||||||||||
Sbjct  138  CTTCGTATGCTCGGTAATGGCCGTTGTGATGTTATGTGCATTGACGGTGTTAAGCGTCTT  197

Query  316  TGCCATATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCTGCTGGTGACATCATACTT  375
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  198  TGCCATATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCTGGTGACATCATACTT  257

Query  376  GTTGGTCTAAGAGATTACCAGGATGATAAAGCTGATGTTATACTCAAGTATATGTCTGAT  435
            |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct  258  GTTGGTCTGAGGGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGTCTGAT  317

Query  436  GAGGCTAGGCTTCTTAAGGCGTATGGTGAGCTTCCGGAGAATACTCGTCTTAACGAAGGT  495
            |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct  318  GAGGCTAGGCTTCTCAAGGCGTATGGTGAGCTTCCGGAGAACACTCGTCTTAATGAAGGT  377

Query  496  ATTGTTGGTGATCTtgatgatgatga  521
            |||||||||||||||||||| |||||
Sbjct  378  ATTGTTGGTGATCTTGATGAAGATGA  403


> Ahg930770 jgi|Araly1|930770|scaffold_303227.1
Length=481

 Score =  499 bits (270),  Expect = 1e-140
 Identities = 346/384 (90%), Gaps = 0/384 (0%)
 Strand=Plus/Plus

Query  142  ATGCCgaagaacaaaggaaagggaggaaagaacaggaagagaggaaagaacgaagCTGAT  201
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  22   ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCGGAC  81

Query  202  GACGAAAAGCGAGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTTCTTCGT  261
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  82   GACGAGAAGCGTGAGCTTATATTCAAAGAAGATGGACAAGAATACGCACAAGTCCTTCGT  141

Query  262  ATGCTCGGTAACGGTCGATGCGACGTTATGTGCATTGACGGTGTTAAGCGTCTTTGCCAT  321
            ||||| || || ||  |||| || | |||||| || || ||    |||||||||||||||
Sbjct  142  ATGCTTGGAAATGGAAGATGTGAAGCTATGTGTATCGATGGAACCAAGCGTCTTTGCCAT  201

Query  322  ATCCGTGGTAAGATGCATAAGAAGGTTTGGATTGCTGCTGGTGACATCATACTTGTTGGT  381
            ||||||||||||||||| ||||||||||||||||| || ||||||||  |||||||||||
Sbjct  202  ATCCGTGGTAAGATGCACAAGAAGGTTTGGATTGCAGCAGGTGACATTGTACTTGTTGGT  261

Query  382  CTAAGAGATTACCAGGATGATAAAGCTGATGTTATACTCAAGTATATGTCTGATGAGGCT  441
             | || |||||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct  262  TTGAGGGATTACCAAGATGATAAAGCGGATGTGATTCTCAAGTATATGTCTGATGAGGCT  321

Query  442  AGGCTTCTTAAGGCGTATGGTGAGCTTCCGGAGAATACTCGTCTTAACGAAGGTATTGTT  501
            |||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct  322  AGGCTTCTTAAGGCTTATGGTGAGCTTCCAGAGAATACTCGTCTTAATGAAGGAATTGTT  381

Query  502  GGTGATCTtgatgatgatgatgat  525
            ||||||||||| ||||||||||||
Sbjct  382  GGTGATCTTGAAGATGATGATGAT  405


> Ahg493625 jgi|Araly1|493625|fgenesh2_kg.7__3058__AT5G35670.1
Length=1517

 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Minus

Query  624   ATGTATTTCTGGGGTTTCCAGTTTCTTATCCCTTACTA  661
             ||||||||||||||||||||||||||||||||||||||
Sbjct  1517  ATGTATTTCTGGGGTTTCCAGTTTCTTATCCCTTACTA  1480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27944098161


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5