BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35690.1
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493628 jgi|Araly1|493628|fgenesh2_kg.7__3061__AT5G35690.1 1838 0.0
> Ahg493628 jgi|Araly1|493628|fgenesh2_kg.7__3061__AT5G35690.1
Length=1954
Score = 1838 bits (995), Expect = 0.0
Identities = 1186/1275 (93%), Gaps = 26/1275 (2%)
Strand=Plus/Plus
Query 17 ATAATAAATTTGTTCTTACATACTAATCTTTACGGTTCTGTCTAAATTGAAGAAttt-tt 75
|||||| ||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 1 ATAATAGATTTGTTCTAACATACTAGTCTTTGCGGTTCTGTCTAAATTGAAGAATTTGTT 60
Query 76 ttATCACAAATTCTCAGATTTCTT--GATCTTCAGATTAA-C---CGAATCA-ATGGTCT 128
| |||||||||||| | | ||| ||| || || ||| | | | | | | |||
Sbjct 61 TCGTCACAAATTCTC-G--TGCTTCAGAT-TT-AG-CTAATCTATGGGCTTAGA-GTTCT 113
Query 129 CTCATCGCATGGAAGATTC-AGGaaaaaaaaTCAGAGTTTCTCTTCTTTGGAAAGGAAAC 187
||||||||||||||||||| | ||||| ||| ||||||||| |||||||||||||||||
Sbjct 114 CTCATCGCATGGAAGATTCTA-GAAAACCAATGAGAGTTTCTGTTCTTTGGAAAGGAAAC 172
Query 188 AAATACTCTGTTGAGATCGATTCTGGAGCTTCTCTGAAAGATTTAGGTTACGAATTGAGA 247
|| |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 173 AATTACTCTGTTGAGATTGATTCTGGAGCTTCTCTCAAGGATTTAGGTTATGAATTGAGA 232
Query 248 AAGTTAACCGGCGTTACATCGGAGACGCTTCGTTTGATCGTTCCAAGGTTGAATGAAAAA 307
||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||
Sbjct 233 AAGTTAACCGGCGTTACGTCGGAGACTCTCCGTTTGATCGTTCCTCGGTTGAATGAAAAA 292
Query 308 GGATCAAGCTTGATGTTACCCTTTTCTGATGAACACTCGAGCTTGAGTTTGCAGGAATCA 367
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GGATCAAGATTGATCTTACCCTTTTCTGATGAACACTCGAGCTTGAGTTTGCAGGAATCA 352
Query 368 AACATAATTGAGGATAAAACTATCAGAATGATGGGAGTGTCTGAAGAAGAGGTCGAAGGT 427
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 353 CACATAATTGAGGATAAAACTATCAGAATGATGGGAGTGTCTGAAGAAGAGGTTGATGGA 412
Query 428 GTTCTAAAAGAGGCAGTGTCTGACATGAGGATACTTGGCTTTGAGGAAGAGGAAAGAAGG 487
||| |||||||||||||| |||||||||||||| |||||||||||||||| || ||||||
Sbjct 413 GTTTTAAAAGAGGCAGTGCCTGACATGAGGATAATTGGCTTTGAGGAAGAAGAGAGAAGG 472
Query 488 CTTAAG-CAAAAGAAGTCGTATGTTTCGAGCGCTTCAATCAAGCTTCCGCAAGGGACTTA 546
||| || |||||||| ||||||||| |||||||||||||||||||| || ||| ||||
Sbjct 473 CTT-AGACAAAAGAA---GTATGTTTCAAGCGCTTCAATCAAGCTTCCACAGGGGCCTTA 528
Query 547 CATCTTCGGTGATTTCCGCACTCTTCAGCTCCCGGGTATAGAGTTAAACCCTCCTCCTTC 606
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 529 CATCTTCTGTGATTTCCGCACTCTTCAACTCCCGGGTATAGAGTTAAACCCTCCCCCTTC 588
Query 607 TGCTGCTTTAAAGAGAATGCACATGCTTGCAGCAGACCCTGGTATTATTGCTGTTATGAA 666
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 589 TGCTGCTTTAAAGAGAATGCACATGCTTGCAGCTGACCCTGGTATTATCGCTGTTATGAA 648
Query 667 CAAGCATCGTTGGAGAGTAGGGATTATGACTGAACTTGCTCCAGTTGGTTATGTTGGTGT 726
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 649 CAAGCATCGATGGAGAGTAGGGATTATGACTGAACTTGCCCCAGTTGGTTATGTTGGTGT 708
Query 727 TAGTCCACGATGCCTTCTGGGGTTTAACAAGAATCAAGGAGAGGAGATTTCTCTACGCCT 786
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TAGTCCGCGATGCCTTCTGGGGTTTAACAAGAATCAAGGAGAGGAGATTTCTCTACGCCT 768
Query 787 TCGGACTGATGATCTCAAGGGATTCAGAAAGTATCAGAGCATAAAAAAGACTCTATTGCA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCGGACTGATGATCTCAAGGGATTCAGAAAGTATCAGAGCATAAAAAAGACTCTATTGCA 828
Query 847 TGAGCTTGCTCACATGGTATACACGGAGCATGATGAGAAA-TTTTATGCTCTTGATAGCC 905
|||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 829 TGAGCTTGCTCACATGATATACACGGAGCATGATGA-AAACTTTTATGCTCTTGATAGCC 887
Query 906 AGTTGAACAAAGAAGCTGAAAGCTTAGATTGGACTAAATCAAGGGGTCACACTTTGAATG 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 AGTTGAACAAAGAAGCTGAAAGCTTAGATTGGACTAAATCAAGGGGTCACACTTTGAATG 947
Query 966 GAACAAAATTTATCAATGACGATGATGAGGAAGACTACTTCTTCGATGAAAATGAAACTG 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 948 GAACAAAATTTATCAATGACGATGATGAGGAAGACTACTTCTTCGATGAAAATGAAAGTG 1007
Query 1026 TTTCTCAAAGGCTTGGTGGAAACCAGTCCGATAATCTTGGAAATGCTCGTGAATCGTCTG 1085
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1008 TTTCTCAAAGGCTTGGTGGAAACCAGTCTGATAATCTTGGAAATGCTCGTGAATCGTCGG 1067
Query 1086 TTGCTGCTGCTTATCGCCGTCTCTCCCATACAAGTGTTTCAAAACTCAGCGAAGAACCTG 1145
|||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 1068 TTGCTGCTGCTTATCGCCGTCTCTCCCACACAGGTGTTTCGAAACTCAGCGAAGAACCTG 1127
Query 1146 ATCCTGATGACTTGGTTGAT-GTTCGTGATGAGAATAAACAGCTTGTTCTCCCTAAAGCT 1204
||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||
Sbjct 1128 ATCCTGATGACTTGGTT-ATTGTTCGTGATGAGAATAAACAGCCTGTTCTCCCTAAAGCT 1186
Query 1205 CAGTCTGATTCTATGACTAAGTTTGAGCCTGATCCTGATGATACCACTGCAGATGATGCA 1264
||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1187 CAGTCTGATTCGATGAGTAAGTTTGAGCCTGATCCCGATGATACCACTGAAGATGATGCA 1246
Query 1265 ACCAAAACCGAATCA 1279
||||||| |||||||
Sbjct 1247 ACCAAAATCGAATCA 1261
Score = 878 bits (475), Expect = 0.0
Identities = 553/591 (94%), Gaps = 4/591 (1%)
Strand=Plus/Plus
Query 1372 AGGGGAAGTTGAAAATATGAAAATTGTAAATGACACTGTAATGTTGTGTGGGAATCTGAA 1431
|||||||| ||||||||||||||| | ||||||||||||||||||| |||||||| || |
Sbjct 1261 AGGGGAAGGTGAAAATATGAAAATAGCAAATGACACTGTAATGTTGGGTGGGAATTTGGA 1320
Query 1432 TGCAGATGAAGCTACGCAGGCGACACCTGAGCCTAATAATGCAGAACCGTATCCA-GACT 1490
|||||||||||||| ||||| ||| |||| ||||||||||||||||||||| || ||||
Sbjct 1321 TGCAGATGAAGCTATGCAGGATACATCTGATCCTAATAATGCAGAACCGTAT-CATGACT 1379
Query 1491 ATAACCTGGTGGTCACAGAGAGGGAAACAATCATGGAGGTTGATGAGCCGGATCCAGATG 1550
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 ATAACCTGGTGGTCACAGAGAGGGAAACAATCATGGAGGTTTATGAGCCGGATCCAGATG 1439
Query 1551 ATCAAGAAATCCAGAGGATCCAAGACTCTGTTACCATCATCTCTAACCGTCTCAAGAAAG 1610
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ATCAAGAAATTCAGAGGATCCAAGACTCTGTTACCATCATCTCTAACCGTCTCAAGAAAG 1499
Query 1611 CCATAAAGGCCTTGAGAAATGAAGTCAGCCCCGGTCAAGCAACCACTGTGTTACAAATGC 1670
||||||| ||||||| ||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 1500 CCATAAATGCCTTGAAAAATGAAGTTAGCCCCGGTCAAACAACCAATGTGTTACAAATGC 1559
Query 1671 TTCTCAAAATAGTCAGGAACATCATTGAACAACCAAATGAAATGAAATTCAAAAGGCTGC 1730
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTCTCAAAATAGTGAGGAACATCATTGAACAACCAAATGAAATGAAATTCAAAAGGCTGC 1619
Query 1731 GTAAGGGAAATCCTGCAATTAAGCGCAACATTCTCAACTTTC-CAGCTGCGGTTGAGATA 1789
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1620 GTAAGGGAAATCCTGCAATTAAGCGCAACATTCTCAACTT-CACAGCTGCGGTTGAGATC 1678
Query 1790 CTTTCCGTCGTTGGCTTTGTCGATGAGATGGTATCAGAAAGCACAGGAGCACAAGAACCA 1849
|||||||| ||||| |||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 1679 CTTTCCGTGGTTGGATTTGTCGAAGAGATGGTATCAGAAGGCACAGGAGCGCAAGAACCA 1738
Query 1850 TATTTGGTACTGAAACGAAATGACCCAGGTCTCTTGTGGATTGCCAAGTCCATGATTGAA 1909
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1739 TATTTGGTACTAAAACGTAATGACCCAGGCCTCTTGTGGATTGCCAAGTCCATGATTGAA 1798
Query 1910 GAGTCACACCCCACAGGTTCCTAGTTAATGATATGGCATTTTCTCTGTAAA 1960
|| ||||||||||||||||||||| |||| ||| | || ||||||||||||
Sbjct 1799 GAATCACACCCCACAGGTTCCTAGCTAATAATACGACAATTTCTCTGTAAA 1849
Score = 124 bits (67), Expect = 2e-27
Identities = 96/109 (88%), Gaps = 5/109 (5%)
Strand=Plus/Plus
Query 1990 TGAGTATATAAGGAGTACGGTTTCTATTACACTGCATGTACAAACATATT-TATAAATGA 2048
|||||||||||| | ||| |||||| ||||||| |||||||||||| || ||||||||
Sbjct 1850 TGAGTATATAAGCAATAC-GTTTCTGTTACACT--ATGTACAAACAT-TTCTATAAATGG 1905
Query 2049 AGAGTGTGAGTCTGCTGATTGTAAAGCAGAACATGCTATTTACAGGAAG 2097
|| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1906 AGTCTGTGAATCTGCTGATTGTAAAGCAGAACATGCTATTTACAAGAAG 1954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79303890090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5