BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G35700.1
Length=2568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493629 jgi|Araly1|493629|fgenesh2_kg.7__3062__AT5G35700.1 4095 0.0
Ahg319280 jgi|Araly1|319280|fgenesh1_pm.C_scaffold_3002296 1646 0.0
> Ahg493629 jgi|Araly1|493629|fgenesh2_kg.7__3062__AT5G35700.1
Length=2554
Score = 4095 bits (2217), Expect = 0.0
Identities = 2463/2577 (96%), Gaps = 35/2577 (1%)
Strand=Plus/Plus
Query 1 TGTCAAATCATTCCATTTCATCGCAGGTCGTGCGCTCGAAAAACTCAACACGAAATTCAT 60
||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TGTCATATCATTCCATTTCGTCGCAGGTCGTGCGCTCGAAAAACTCAACAC-AAATTCAT 59
Query 61 TATTTCGAAACAGATCTCTTTTTAAGCTTCAAAGATCAAAACTTTATCCTGATA-AAGAG 119
|||||| ||| ||||||| ||| ||||||||||||||||||||||||| | | || |
Sbjct 60 TATTTCCAAATAGATCTC--TTTGAGCTTCAAAGATCAAAACTTTATCC-G-CAGAA-AT 114
Query 120 AATATGAACACGAACCACATTCAATCTCTCAATCTGCTCTAAGGGATTTGTTTTGTCTTG 179
||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 115 AATATGAACACCAATCACATTCAATCTCTGAATCTTCTCTAAGGGATTTGTTTTGTCTTG 174
Query 180 ATTCTGC-G-GAGAAATCGATTAGAAAAAATGTCTAGTTACGTTGGTGTTCTTGTCTCTG 237
||||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 175 ATTCTGCGGAGAGAAATCGA-TAG--AAAATGTCTAGTTACGTTGGTGTTCTTGTCTCTG 231
Query 238 ATCCTTGGTTACAGAGCCAATTTACACAAGTGGAATTGCGTACCCTTAAATCTAAGTTTG 297
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATCCATGGTTACAGAGCCAATTTACACAAGTGGAATTGCGTACCCTTAAATCTAAGTTTG 291
Query 298 TTTCGAACAAAACTCAATTAGGA-CGTTTCACTGTCGGAGATTTACCACCTGTTTTCGAA 356
|||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||| |
Sbjct 292 TTTCGAACAAAACTCAATTA-GAGCGTTTTACTGTCGGAGATTTACCACCTGTGTTCTCA 350
Query 357 AAGTTGAAAGCTTTTAACGGTACCATTGATGAGGATGAGATCAAATCTGTATTGGACAAG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AAGTTGAAAGCTTTTAACGGTACCATTGATGAGGATGAGATCAAATCTGTATTGGACAAG 410
Query 417 TCTTATCCCAATGCTGATGATGAAGTCGATTTTGAGTTCTTTCTTCGGGCCTTTTTAAGT 476
|||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |
Sbjct 411 TCTTATTCCAATGCTGATGATGAAGTCGATTTTGAGACCTTTCTCCGGGCCTTTTTAAAT 470
Query 477 GTGCAAGCACGAGGAGTTGAGAAATCAGGAGGGTCAAAAGGTGCTTCTTCATTCCTCAAA 536
|||||||| ||||||||||| ||| ||||||| || |||||| |||||||||||||||||
Sbjct 471 GTGCAAGCCCGAGGAGTTGAAAAAACAGGAGGATCTAAAGGTTCTTCTTCATTCCTCAAA 530
Query 537 ACCAGTACTACAACGGTGCACCATGCGATCAATGAATCCGAGAAGGCTTCTTATGTTTCG 596
||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 531 ACCAGTACTACAACGGTTCATCATGCCATCAATGAATCCGAGAAGGCTTCCTATGTTTCC 590
Query 597 CATGTTAATAATTACTTGAGAGATGATCCTTTCTTGAAGAGCTATCTTCCTATTGATCCC 656
||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 591 CATATCAATAATTACTTGAGAGATGATCCTTTCTTGAAGAGCTATCTTCCTATCGATCCC 650
Query 657 GCAACAAATGCTTTCTTTGATCTTGTTAAAGATGGTGTTCTTTTGTGTAAGCTTATAAAT 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GCAACTAATGCTTTCTTTGATCTTGTTAAAGATGGTGTTCTTTTGTGTAAGCTTATAAAT 710
Query 717 GTTGCTGTTCCTGGGACCATCGACGAACGAGCTATCAACACAAAGAAAACGCTTAACCCA 776
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 711 GTTGCTGTTCCTGGGACCATCGATGAACGAGCTATCAACACAAAGAAAACGCTTAACCCA 770
Query 777 TGGGAGAGGAATGAGAACCTTACTTTAGGTCTCAATTCTGCCAAAGCTATTGGCTGCACA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGGGAGAGGAATGAGAACCTTACTTTAGGTCTCAATTCTGCCAAAGCTATTGGCTGCACA 830
Query 837 GTGGTCAACATTGGAACACAGGACATAGCTGAAGGAAGACCATATCTCGTACTTGGGTTG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GTGGTCAACATTGGAACACAGGACATAGCTGAAGGAAGACCATATCTCGTACTTGGGTTG 890
Query 897 ATATCTCAGATTATAAAGATCCAAATGTTGGCTGATCTCAATTTTAAGAAAACTCCTTCG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 891 ATATCTCAGATTATAAAGATCCAAATGTTGGCTGATCTCAATTTTAAGAAAACGCCTTCG 950
Query 957 CTTTTTCAACTGGTGGACGACACTCAGGATGCAGAGGAGCTCATGGGATTGGCTCCTGAA 1016
||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 951 CTTTTTCAATTGGTAGACGACACTCAGGATGCGGAGGAGCTCATGGGACTGGCTCCCGAA 1010
Query 1017 AAAGTTTTGCTAAAATGGATGAATTTCCATCTGAAGAAAGCTGGTTATGAAAAGCAGGTT 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1011 AAAGTTTTGCTAAAATGGATGAATTTCCATCTAAAGAAAGCTGGTTATGAAAAGCAGGTT 1070
Query 1077 ACGAATTTTTCTTCTGATTTGAAGGACGGTGAGGCATATGCGTACCTGCTTAATGCCCTT 1136
|| ||||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 1071 ACAAATTTTTCTTCTGATGTGAAGGACGGTGAGGCATATGCATATCTGCTTAATGCCCTT 1130
Query 1137 GCTCCAGAACACAGTACACATGTGGCATTAGAGACCAAAGACCCCACAGAAAGAGCGAAA 1196
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1131 GCTCCAGAACACAGTACACATGTGGCATTGGAGACCAAAGACCCCACAGAAAGAGCGAAA 1190
Query 1197 AAGGTTCTTGAGCAGGCTGAGAAGCTGGATTGTAAACGATACCTTTCTCCCAAAGACATA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1191 AAGGTTCTTGAGCAGGCTGAGAAGCTGGATTGTAAACGATACCTTTCTCCAAAAGACATA 1250
Query 1257 GTGGACGGCTCAGCAAATCTTAACCTTGCATTTGTGGCGCAAATATTTCAGCACAGGAAT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GTGGACGGCTCAGCAAATCTTAACCTTGCATTTGTGGCGCAAATATTTCAGCACAGGAAT 1310
Query 1317 GGATTGACTGTTGACGATTCAAAGACATCATTTGCTGAGATGATGACAGATGATGTGGAA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GGATTGACTGTTGACGATTCAAAGACATCATTTGCTGAGATGATGACAGATGATGTGGAA 1370
Query 1377 ACTTCACGAGAAGAAAGATGTTTCCGCCTCTGGATTAACAGTCTTGGCACAGCCACTTAT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 ACTTCACGAGAAGAAAGATGTTTCCGCCTCTGGATTAACAGTCTTGGCACAGCCACTTAT 1430
Query 1437 GTCAATAATGTTTTTGAGGATCTTAGGAATGGGTGGGTTCTTCTTGAAGTTCTCGACAAA 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GTCAATAATGTTTTTGAGGATCTTAGGAATGGGTGGGTTCTTCTTGAAGTTCTCGACAAA 1490
Query 1497 GTTTCACCTGGCTCGGTCAACTGGAAACACGCAAATAAACCTCCCATAAAAATGCCATTC 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 GTTTCACCTGGCTCGGTCAACTGGAAACACGCAAATAAACCTCCCATAAAAATGCCATTC 1550
Query 1557 AAAAAGGTTGAGAACTGCAATGAAGTTATAAAGATTGGGAAGGAACTGCGCTTTTCCCTT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 AAAAAGGTTGAGAACTGCAATGAAGTTATAAAGATTGGGAAGGAACTGCGCTTTTCCCTT 1610
Query 1617 GTCAATGTAGCTGGGAATGACATTGTGCAAGGAAATAAGAAACTTCTTCTCGCATTTTTG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1611 GTCAATGTAGCTGGGAATGACATTGTGCAAGGAAATAAGAAACTTCTTCTCGCTTTTTTG 1670
Query 1677 TGGCAACTAATGAGATATACAATGCTCCAACTTCTGAGGAACTTGAGATCACACTCGCAA 1736
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1671 TGGCAACTAATGAGATATACAATGCTCCAACTTCTGAAGAACTTGAGATCTCACTCGCAA 1730
Query 1737 GGTAAAGAAATTACAGATGCAGATATTCTTAACTGGGCGAATAGGAAAGTGAAGAGAGGT 1796
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1731 GGTAAAGAAATTACAGATGTAGATATTCTTAACTGGGCGAATAGGAAAGTGAAGAGAGGG 1790
Query 1797 GGCCGAACTAGTCAGGCTGATAGCTTCAGGGACAAGAATCTGTCTAGTGGAATGTTCTTT 1856
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1791 GGCCGAACTAGTCAGGCTGATAGCTTCAGGGACAAGAATCTGTCAAGTGGAATGTTCTTT 1850
Query 1857 CTGGAACTTCTTAGTGCGGTAGAGCCAAGAGTTGTCAACTGGAGCCTCGTTACCAATGGA 1916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CTGGAACTTCTTAGTGCGGTAGAGCCAAGAGTTGTCAACTGGAGCCTCGTTACCAATGGA 1910
Query 1917 GAAACAGAGGAGGATAAGAAGTTGAATGCCACATACATCATCAGTGTTGCACGAAAGCTT 1976
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1911 GAAACAGAGGAAGATAAGAAGTTGAATGCCACATACATCATCAGTGTGGCACGAAAGCTC 1970
Query 1977 GGATGTTCCATATTCTTGTTGCCTGAAGATATCATAGAGGTGAACCAGAAGATGATGCTT 2036
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1971 GGATGCTCCATATTCTTGTTACCTGAGGATATCATAGAGGTGAACCAGAAGATGATGCTT 2030
Query 2037 ATCTTGGCAGCCAGCATCATGTACTGGAGCCTCCAACAACAATCAGACACAGAGTCTACT 2096
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 ATTTTGGCAGCCAGCATCATGTACTGGAGCCTCCAACAACAATCAGACACAGAGTCTACT 2090
Query 2097 GTCTCAGAAGACGCCACTGATGATGGCGACGCAAACTCTGTAGCGGGTGAAATCTCCAAT 2156
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2091 GTCTCAGAAGACGCCACTGATGATGGCGACGCAAACTCTGTTGCTGGTGAAATCTCCAAT 2150
Query 2157 TTGTCCATTGATGGAGCTTCCGAGTCCAGTCCCACTGTCCAAGATCAAGAATTGCTGACG 2216
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2151 TTGTCCATTGATGGGGCTTCTGAGTCCAGTCCCACTGTCCAAGACCAAGAATTGCTGACG 2210
Query 2217 AAGGCAGACAATGATGAGGATGAGGTTGATGGTGAGAATAATAAAGATGCATGACGCGTT 2276
|||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 2211 AAGGCAGAGAAGGATGAGGACGAGGTTGATGGTGAGAATAATAAAGATGCATAACGCGTT 2270
Query 2277 TGAATGTTTATTTTGATCGTTGTTTTTTGGTTTATTGCGTGAAGTTTTGATTGGCACAAA 2336
||||| || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2271 TGAAT-TT------GATCGTTGTTTTT-GGTTTATTGCGTGAAGTTTTGATTGGCACAAA 2322
Query 2337 GGAAACACAAAGAAAGAA-GAA---CAAGGTTTGATATGTATACAAACAAAGAGGGTTTT 2392
|||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 2323 GGAAACCCAAAGAAAGAAAGAAGAACAAGGTTTGAT--GTATACAAACAAAGAGGGTTTT 2380
Query 2393 GGTACACAAGTTTTACATTGTGTACGTAAACCTCatttttgaattgttaaagttctactt 2452
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2381 GGTACACAAGTTTTACATTGTGTACGTAAACCTCATTTTTGAATTGTGAAAGTTCTACTT 2440
Query 2453 tattttattttgtttattggaccttttttttttc---atttccaatttcatttttgtttA 2509
||||||||||| |||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 2441 TATTTTATTTTATTTATTGGACATTTTTTTTTTGTTGATTTCCAGTTTCATTTTTGTTTA 2500
Query 2510 TCACCGGTCTAAACTCGAAATTGTATAATTGTTT-AGGCAGAAAACAATAACATTTA 2565
||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 2501 TCACCGGTCTAAACTCGAAAT---ATAACTGTTTTAGGCAGAAAACAATAACATTTA 2554
> Ahg319280 jgi|Araly1|319280|fgenesh1_pm.C_scaffold_3002296
Length=1962
Score = 1646 bits (891), Expect = 0.0
Identities = 1596/1929 (83%), Gaps = 77/1929 (4%)
Strand=Plus/Plus
Query 207 ATGTCTAGTTACGTTGGTGTTCTTGTCTCTGATCCTTGGTTACAGAGCCAATTTACACAA 266
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 1 ATGTCTAGTTACGTTGGTGTTCTTGTCTCTGATCCATGGCTACAGAGCCAATTCACACAA 60
Query 267 GTGGAATTGCGTACCCTTAAATCTAAGTTTGT-TTCGAACAAAA-CTCAATTAGGACGT- 323
||||| || || || |||||||| |||||| | ||||| ||||| ||| ||| || |||
Sbjct 61 GTGGAGTTACGCACTCTTAAATCCAAGTTT-TATTCGA-CAAAAACTCGATTTGGTCGTG 118
Query 324 TTCACTGTCGGAG-ATTTACCACCTGTTTTCG-AAAAGTTGAAAGCTTTTAACGGTACCA 381
|| ||||| | | |||||||||| || || | |||| ||||||| ||| | || |
Sbjct 119 TT-ACTGT-GAAACATTTACCACCAGTGTTAGCAAAA-TTGAAAGATTTCAGTGGCAAGT 175
Query 382 TTGATGAGGATGAGATCAAATCTGTATTGGACAAGTCTTATCCCAAT-GCTGATGATGAA 440
||||||| ||||||||||| || ||||||| ||||||| |||||| || | | | |||
Sbjct 176 TTGATGAAAATGAGATCAAAACTATATTGGATGAGTCTTACCCCAATCGC-GCTAAGGAA 234
Query 441 GTCGATTTTGAGTTCTTTCTTCGGGCCTTTTTAAGTGTGCAAGCACGAGGAGTTGAGAAA 500
|| || || ||| |||||||||||||||||||||||||||| | |||||| | | |||
Sbjct 235 GTTGAGTTCGAGACCTTTCTTCGGGCCTTTTTAAGTGTGCAATCCCGAGGA-TC-A-AAA 291
Query 501 TCAGGAGGGTCAAAAGGTGCTTCTTCATTCCTCAAAACCAGTA-CTACAACGGTGCACCA 559
|| | | |||| || || ||||| || || | |||||||| | || ||
Sbjct 292 ---GG-----C----G---CTTCATCGTTTCTCAAGAC-AGGAGCTACAACGTTCCATCA 335
Query 560 TGCGATCAATGAATCCGAGAAGGCTTCTTATGTTTCGCATGTTAATAATTACTTGAGAGA 619
||||||||||||||||||||| ||||| ||||| || ||| | |||| ||| |||| |||
Sbjct 336 TGCGATCAATGAATCCGAGAAAGCTTCCTATGTGTCCCATATCAATAGTTATTTGAAAGA 395
Query 620 TGATCCTTTCTTGAAGAGCTATCTTCCTATTGATCCCGCAACAAATGCTTTCTTTGATCT 679
|| ||| ||||||||||||||||||| || |||| || ||||||||||| ||||||||
Sbjct 396 AGAACCTCTCTTGAAGAGCTATCTTCCAATCAATCCTGCTACAAATGCTTTGTTTGATCT 455
Query 680 TGTTAAAGATGGTGTTCTTTTGTGTAAGCTTATAAATGTTGCTGTTCCTGGGACCATCGA 739
||||||||||||||||||| |||||||||||||||| | ||||| |||||||| || ||
Sbjct 456 TGTTAAAGATGGTGTTCTTCTGTGTAAGCTTATAAACATAGCTGTGCCTGGGACGATAGA 515
Query 740 CGAACGAGCTATCAACACAAAGA-A-AACGCTTAACCCATGGGAGAGGAA-TGAGAACCT 796
|||| |||| || ||||| |||| | ||| |||| ||||||||||| || ||| || ||
Sbjct 516 CGAAAGAGCGATAAACACGAAGACAGAAC--TTAATCCATGGGAGAG-AACTGAAAATCT 572
Query 797 T--ACTTTAGGTCTCAATTCTGCCAAAGCTATTGGCTGCACAGTGGTCAACATTGGAACA 854
| ||| | | |||||| || || || || || |||||||| || ||||||||||||||
Sbjct 573 TTCACTCT-G-TCTCAACTCGGCTAAGGCGATAGGCTGCACCGTCGTCAACATTGGAACT 630
Query 855 CAGGACATAGCTGAAGGAAGACCATATCTCGTACTTGGGTTGATATCTCAGATTATAAAG 914
|||||||| |||||||||| ||| |||| |||||||||||||| | |||||||||||||
Sbjct 631 CAGGACATTGCTGAAGGAACACCCCATCTTGTACTTGGGTTGATCTTTCAGATTATAAAG 690
Query 915 ATCCAAATGTTGGCTGATCTCAATTTTAAGAAAACTCCTTCG-CTTTTTCAACTGGTGGA 973
|||||| || |||||||||||||| ||||||||||||| | ||| || | |||||||
Sbjct 691 ATCCAATTGCTGGCTGATCTCAATCTTAAGAAAACTCCA-CAACTTGTTGAGTTGGTGGA 749
Query 974 CGACA-CTCAGGATGCAGAGGAGCTCATGGGATTGGCTCCTGAAAAAGTTTTGCTAAAAT 1032
|| | | ||||||| |||||||| |||||| | |||||||| ||| ||||||||||||
Sbjct 750 AGAAAAC-CAGGATGTGGAGGAGCTTATGGGACTAGCTCCTGAGAAACTTTTGCTAAAAT 808
Query 1033 GGATGAATTTCCATCTGAAGAAAGCTGGTTATGA-AAAGCAGGTTACGAATTTTTCTTCT 1091
|||||||||| ||||| ||||||||||||||||| ||| || || || ||||| ||||||
Sbjct 809 GGATGAATTTTCATCTCAAGAAAGCTGGTTATGAGAAA-CAAGTAACCAATTTCTCTTCT 867
Query 1092 GAT-TTGAAGGACGGTGAGGCATATGCGTACCTGCTTAATGCCCTTGCTCCAGAACACAG 1150
||| || ||||| || || |||||||| |||||||| ||||| || || |||||||||||
Sbjct 868 GATGTT-AAGGATGGAGAAGCATATGCATACCTGCTCAATGCTCTAGCACCAGAACACAG 926
Query 1151 TACACATGTGGCATTAGAGACCAAAGACCCCACAGAAAGAGCGAAAAAGGTTCTTGAGCA 1210
||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 927 CACACATGTGACATTAGAGATCAAAGACCCTTCAGAAAGAGCGATGAAGGTTCTTGAGCA 986
Query 1211 GGCTGAGAAGCTGGATTGTAAACGATACCTTTCTCCCAAAGACATAGTGGACGGCTCAGC 1270
|| |||||||||||||||||| ||| ||||||||| ||||| ||||| || ||||| ||
Sbjct 987 AGCAGAGAAGCTGGATTGTAAAAGATTCCTTTCTCCTAAAGATATAGTTGAAGGCTCTGC 1046
Query 1271 AAATCTTAACCTTGCATTTGTGGCGCAAATATTTCAGCACAGGAATGGATTGACTGTTGA 1330
||||||||| |||||||||||||| ||| | ||||| ||||||||||| ||| ||| |||
Sbjct 1047 AAATCTTAATCTTGCATTTGTGGCACAACTGTTTCACCACAGGAATGGGTTGTCTGATGA 1106
Query 1331 CGA-TTCAAAGA--CAT--CA-T-TTGCTGAGATGATGACAGATGATG-TGGAAACTTCA 1382
|| ||||||| | | | | || |||||||| | ||||| |||| || |||||||
Sbjct 1107 -GAGTTCAAAGGGGCCTGTCTCTGTTACTGAGATGGTCACAGAAGATGATG-AAACTTCT 1164
Query 1383 CGAGAAGAAAGATG-TTTCCGCC-TCTGGATTAACAGTCTTGGCACAGCCACTTATGTCA 1440
||||||||| |||| |||| ||| | ||||| ||||||||||| | | |||||||||
Sbjct 1165 CGAGAAGAACGATGCTTTC-GCCAT-TGGATGAACAGTCTTGGTGCTGTGACTTATGTCG 1222
Query 1441 ATAATGTTTTTGAGGATCTTAGGAATGGGTGGGTTCTTCTTGAAGTTCTCGACAAAGTTT 1500
|||||||||| |||||| |||| ||||| |||||||||||||||||||| |||||||| |
Sbjct 1223 ATAATGTTTTCGAGGATGTTAGAAATGGATGGGTTCTTCTTGAAGTTCTTGACAAAGTAT 1282
Query 1501 CACCTGGCTCGGTCAACTGGAAACACGCAAATAAACCTCCCATAAAAATGCCATTCAAAA 1560
| || ||||||||||||||||| ||||| ||||||||||| || |||||||||||||| |
Sbjct 1283 CGCCAGGCTCGGTCAACTGGAAGCACGCGAATAAACCTCCTATCAAAATGCCATTCAAGA 1342
Query 1561 AGGTTGAGAACTGCAATGAAGTTATAAAGATTGGGAAGGAACTGCGCTTTTCCCTTGTCA 1620
||||||||||||| || ||||||| ||||||||||| ||| || ||| || |||||||
Sbjct 1343 AGGTTGAGAACTGTAACCAAGTTATCAAGATTGGGAAAGAATTGAACTTCTCGCTTGTCA 1402
Query 1621 ATGTAGCTGGGAATGACATTGTGCAAGGAAATAAGAAACTTCTTCTCGCATTTTTGTGGC 1680
|||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 1403 ATGTAGCTGGCCATGACATTGTGCAAGGAAACAAGAAGCTCCTTCTCGCTTTTTTGTGGC 1462
Query 1681 AACTAATGAGATATACAATGCTCCAACTTCTGAGGAACTTGAGATCACACTCGCAAGGTA 1740
|| | |||||||| |||||||||||| | |||| ||||||||||| |||| ||||||||
Sbjct 1463 AATTGATGAGATACACAATGCTCCAAATCCTGAACAACTTGAGATCTCACTGGCAAGGTA 1522
Query 1741 AAGAAATTACAGATGCAGATATTCTTAACTGGGCGAATAGGAAAGTGAAGAGAG-GTGGC 1799
||| |||||||| ||||||||||| |||||||| ||||||||||| |||| | | ||
Sbjct 1523 GAGATATTACAGAGGCAGATATTCTGAACTGGGCAAATAGGAAAGTCAAGAAATCG-GGT 1581
Query 1800 CGAAC-TAGTCAGGCTGAT-AGCTTCAGGGACAAGAATCTGTCTAGTGGAATGTTCTTTC 1857
||| | | ||| || | | ||||||| ||||||||||||| | | |||||| ||||||
Sbjct 1582 CGACCCTC-TCAAGCAG-TGAGCTTCAAGGACAAGAATCTGGCAAATGGAATCTTCTTTT 1639
Query 1858 TGGAACTTCTT-AGTGCGGTAGAGCCAAGAGTTGTCAACTGGAGCCTCGT-TACCAATGG 1915
|||| ||| || ||||| ||||||||||||||||| |||||||| || || | |||| ||
Sbjct 1640 TGGAGCTT-TTGAGTGCCGTAGAGCCAAGAGTTGTAAACTGGAGTCTTGTCT-CCAAAGG 1697
Query 1916 AGAAACAG-AG--GAGGATAAGAAGTTGAATGCCACATACATCATCAGTGTTGCACGAAA 1972
|||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||| | ||
Sbjct 1698 AGAAACAGCAGAAGAGGAAAAGAATTTGAATGCAACATACATCATAAGTGTTGCAAGGAA 1757
Query 1973 GCTTGGATGTTCCATATTCTTGTTGCCTGAAGATATCATAGAGGTGAACCAGAAGATGAT 2032
||| ||||| || || |||||||||||||||||||| ||||||| || |||||||||||
Sbjct 1758 GCTCGGATGCTCAATCTTCTTGTTGCCTGAAGATATTTTAGAGGTAAATCAGAAGATGAT 1817
Query 2033 GCTTATCTTGGCAGCCAGCATCATGTACTGGAGCCTCCAACAACAATCAGACACAGAGTC 2092
|||||| || || || ||||||||| |||||||||| || |||||||||||||| |||||
Sbjct 1818 GCTTATATTAGCTGCTAGCATCATGAACTGGAGCCTTCAGCAACAATCAGACACCGAGTC 1877
Query 2093 TACTGTCTC 2101
|||||||||
Sbjct 1878 TACTGTCTC 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96825402790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5